New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking

Detalhes bibliográficos
Autor(a) principal: Duarte, Ricardo Franco
Data de Publicação: 2016
Outros Autores: Umek, Lan, Mendes, Inês, Castro, C. C., Fonseca, Nuno, Martins, Rosa, Ferreira, António C. Silva, Sampaio, Paula, Pais, Célia, Schuller, Dorit
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/41774
Resumo: During must fermentation by Saccharomyces cerevisiae strains thousands of volatile aroma compounds are formed. The objective of the present work was to adapt computational approaches to analyze pheno-metabolomic diversity of a S. cerevisiae strain collection with different origins. Phenotypic and genetic characterization together with individual must fermentations were performed, and metabolites relevant to aromatic profiles were determined. Experimental results were projected onto a common coordinates system, revealing 17 statistical-relevant multi-dimensional modules, combining sets of most-correlated features of noteworthy biological importance. The present method allowed, as a breakthrough, to combine genetic, phenotypic and metabolomic data, which has not been possible so far due to difficulties in comparing different types of data. Therefore, the proposed computational approach revealed as successful to shed light into the holistic characterization of S. cerevisiae pheno-metabolome in must fermentative conditions. This will allow the identification of combined relevant features with application in selection of good winemaking strains.
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spelling New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemakingSaccharomyces cerevisiaeData-fusionWine yeastsMetabolomicsMatrix factorizationScience & TechnologyDuring must fermentation by Saccharomyces cerevisiae strains thousands of volatile aroma compounds are formed. The objective of the present work was to adapt computational approaches to analyze pheno-metabolomic diversity of a S. cerevisiae strain collection with different origins. Phenotypic and genetic characterization together with individual must fermentations were performed, and metabolites relevant to aromatic profiles were determined. Experimental results were projected onto a common coordinates system, revealing 17 statistical-relevant multi-dimensional modules, combining sets of most-correlated features of noteworthy biological importance. The present method allowed, as a breakthrough, to combine genetic, phenotypic and metabolomic data, which has not been possible so far due to difficulties in comparing different types of data. Therefore, the proposed computational approach revealed as successful to shed light into the holistic characterization of S. cerevisiae pheno-metabolome in must fermentative conditions. This will allow the identification of combined relevant features with application in selection of good winemaking strains.Ines Mendes was recipient of a fellowship from the Portuguese Science Foundation, FCT (SFRH/BD/74798/2010). This work was supported by FCT I.P. through the strategic funding UID/BIA/04050/2013, and the project PTDC/AGR-ALI/121062/2010.Elsevier B.V.Universidade do MinhoDuarte, Ricardo FrancoUmek, LanMendes, InêsCastro, C. C.Fonseca, NunoMartins, RosaFerreira, António C. SilvaSampaio, PaulaPais, CéliaSchuller, Dorit2016-11-152016-11-15T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/41774engFranco-Duarte, Ricardo; Umek, Lan; Mendes, Inês; Castro, C. C.; Fonseca, Nuno; Martins, Rosa; Silva-Ferreira, António C.; Sampaio, Paula; Pais, Célia; Schuller, Dorit, New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking. Food Chemistry, 211, 509-520, 20160308-81460308-814610.1016/j.foodchem.2016.05.08027283661http://www.elsevier.com/locate/issn/03088146info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:22:21Zoai:repositorium.sdum.uminho.pt:1822/41774Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:15:49.660540Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
title New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
spellingShingle New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
Duarte, Ricardo Franco
Saccharomyces cerevisiae
Data-fusion
Wine yeasts
Metabolomics
Matrix factorization
Science & Technology
title_short New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
title_full New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
title_fullStr New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
title_full_unstemmed New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
title_sort New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking
author Duarte, Ricardo Franco
author_facet Duarte, Ricardo Franco
Umek, Lan
Mendes, Inês
Castro, C. C.
Fonseca, Nuno
Martins, Rosa
Ferreira, António C. Silva
Sampaio, Paula
Pais, Célia
Schuller, Dorit
author_role author
author2 Umek, Lan
Mendes, Inês
Castro, C. C.
Fonseca, Nuno
Martins, Rosa
Ferreira, António C. Silva
Sampaio, Paula
Pais, Célia
Schuller, Dorit
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Duarte, Ricardo Franco
Umek, Lan
Mendes, Inês
Castro, C. C.
Fonseca, Nuno
Martins, Rosa
Ferreira, António C. Silva
Sampaio, Paula
Pais, Célia
Schuller, Dorit
dc.subject.por.fl_str_mv Saccharomyces cerevisiae
Data-fusion
Wine yeasts
Metabolomics
Matrix factorization
Science & Technology
topic Saccharomyces cerevisiae
Data-fusion
Wine yeasts
Metabolomics
Matrix factorization
Science & Technology
description During must fermentation by Saccharomyces cerevisiae strains thousands of volatile aroma compounds are formed. The objective of the present work was to adapt computational approaches to analyze pheno-metabolomic diversity of a S. cerevisiae strain collection with different origins. Phenotypic and genetic characterization together with individual must fermentations were performed, and metabolites relevant to aromatic profiles were determined. Experimental results were projected onto a common coordinates system, revealing 17 statistical-relevant multi-dimensional modules, combining sets of most-correlated features of noteworthy biological importance. The present method allowed, as a breakthrough, to combine genetic, phenotypic and metabolomic data, which has not been possible so far due to difficulties in comparing different types of data. Therefore, the proposed computational approach revealed as successful to shed light into the holistic characterization of S. cerevisiae pheno-metabolome in must fermentative conditions. This will allow the identification of combined relevant features with application in selection of good winemaking strains.
publishDate 2016
dc.date.none.fl_str_mv 2016-11-15
2016-11-15T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/41774
url http://hdl.handle.net/1822/41774
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Franco-Duarte, Ricardo; Umek, Lan; Mendes, Inês; Castro, C. C.; Fonseca, Nuno; Martins, Rosa; Silva-Ferreira, António C.; Sampaio, Paula; Pais, Célia; Schuller, Dorit, New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking. Food Chemistry, 211, 509-520, 2016
0308-8146
0308-8146
10.1016/j.foodchem.2016.05.080
27283661
http://www.elsevier.com/locate/issn/03088146
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier B.V.
publisher.none.fl_str_mv Elsevier B.V.
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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