ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/65827 |
Resumo: | Performance of models highly depend not only on the used algorithm but also the data set it was applied to. This makes the comparison of newly developed tools to previously published approaches difficult. Either researchers need to implement others' algorithms first, to establish an adequate benchmark on their data, or a direct comparison of new and old techniques is infeasible. The Ischemic Stroke Lesion Segmentation (ISLES) challenge, which has ran now consecutively for 3 years, aims to address this problem of comparability. ISLES 2016 and 2017 focused on lesion outcome prediction after ischemic stroke: By providing a uniformly pre-processed data set, researchers from all over the world could apply their algorithm directly. A total of nine teams participated in ISLES 2015, and 15 teams participated in ISLES 2016. Their performance was evaluated in a fair and transparent way to identify the state-of-the-art among all submissions. Top ranked teams almost always employed deep learning tools, which were predominately convolutional neural networks (CNNs). Despite the great efforts, lesion outcome prediction persists challenging. The annotated data set remains publicly available and new approaches can be compared directly via the online evaluation system, serving as a continuing benchmark (www.isles-challenge.org). |
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ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRIstrokestroke outcomemachine learningdeep learningbenchmarkingdatasetsMRIprediction modelsScience & TechnologyPerformance of models highly depend not only on the used algorithm but also the data set it was applied to. This makes the comparison of newly developed tools to previously published approaches difficult. Either researchers need to implement others' algorithms first, to establish an adequate benchmark on their data, or a direct comparison of new and old techniques is infeasible. The Ischemic Stroke Lesion Segmentation (ISLES) challenge, which has ran now consecutively for 3 years, aims to address this problem of comparability. ISLES 2016 and 2017 focused on lesion outcome prediction after ischemic stroke: By providing a uniformly pre-processed data set, researchers from all over the world could apply their algorithm directly. A total of nine teams participated in ISLES 2015, and 15 teams participated in ISLES 2016. Their performance was evaluated in a fair and transparent way to identify the state-of-the-art among all submissions. Top ranked teams almost always employed deep learning tools, which were predominately convolutional neural networks (CNNs). Despite the great efforts, lesion outcome prediction persists challenging. The annotated data set remains publicly available and new approaches can be compared directly via the online evaluation system, serving as a continuing benchmark (www.isles-challenge.org).Fundacao para a Ciencia e Tecnologia (FCT), Portugal (scholarship number PD/BD/113968/2015). FCT with the UID/EEA/04436/2013, by FEDER funds through COMPETE 2020, POCI-01-0145-FEDER-006941. NIH Blueprint for Neuroscience Research (T90DA022759/R90DA023427) and the National Institute of Biomedical Imaging and Bioengineering (NIBIB) of the National Institutes of Health under award number 5T32EB1680. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. PAC-PRECISE-LISBOA-01-0145-FEDER-016394. FEDER-POR Lisboa 2020-Programa Operacional Regional de Lisboa PORTUGAL 2020 and Fundacao para a Ciencia e a Tecnologia. GPU computing resources provided by the MGH and BWH Center for Clinical Data Science Graduate School for Computing in Medicine and Life Sciences funded by Germany's Excellence Initiative [DFG GSC 235/2]. National Research National Research Foundation of Korea (NRF) MSIT, NRF-2016R1C1B1012002, MSIT, No. 2014R1A4A1007895, NRF-2017R1A2B4008956 Swiss National Science Foundation-DACH 320030L_163363.Frontiers MediaUniversidade do MinhoWinzeck, StefanHakim, ArsanyMcKinley, RichardPinto, José A. A. D. S. R.Alves, VictorSilva, Carlos A.Pisov, MaximKrivov, EgorBelyaev, MikhailMonteiro, MiguelOliveira, ArlindoChoi, YoungwonPaik, Myunghee ChoKwon, YongchanLee, HanbyulKim, Beom JoonWon, Joong-HoIslam, MobarakolRen, HongliangRobben, DavidSuetens, PaulGong, EnhaoNiu, YilinXu, JunshenPauly, John M.Lucas, ChristianHeinrich, Mattias P.Rivera, Luis C.Castillo, Laura S.Daza, Laura A.Beers, Andrew L.Arbelaezs, PabloMaier, OskarChang, KenBrown, James M.Kalpathy-Cramer, JayashreeZaharchuk, GregWiest, RolandReyes, Mauricio20182018-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/65827eng1664-229510.3389/fneur.2018.00679https://www.frontiersin.org/articles/10.3389/fneur.2018.00679/fullinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:42:23Zoai:repositorium.sdum.uminho.pt:1822/65827Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:39:37.653881Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
title |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
spellingShingle |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI Winzeck, Stefan stroke stroke outcome machine learning deep learning benchmarking datasets MRI prediction models Science & Technology |
title_short |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
title_full |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
title_fullStr |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
title_full_unstemmed |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
title_sort |
ISLES 2016 and 2017-Benchmarking ischemic stroke lesion outcome prediction based on multispectral MRI |
author |
Winzeck, Stefan |
author_facet |
Winzeck, Stefan Hakim, Arsany McKinley, Richard Pinto, José A. A. D. S. R. Alves, Victor Silva, Carlos A. Pisov, Maxim Krivov, Egor Belyaev, Mikhail Monteiro, Miguel Oliveira, Arlindo Choi, Youngwon Paik, Myunghee Cho Kwon, Yongchan Lee, Hanbyul Kim, Beom Joon Won, Joong-Ho Islam, Mobarakol Ren, Hongliang Robben, David Suetens, Paul Gong, Enhao Niu, Yilin Xu, Junshen Pauly, John M. Lucas, Christian Heinrich, Mattias P. Rivera, Luis C. Castillo, Laura S. Daza, Laura A. Beers, Andrew L. Arbelaezs, Pablo Maier, Oskar Chang, Ken Brown, James M. Kalpathy-Cramer, Jayashree Zaharchuk, Greg Wiest, Roland Reyes, Mauricio |
author_role |
author |
author2 |
Hakim, Arsany McKinley, Richard Pinto, José A. A. D. S. R. Alves, Victor Silva, Carlos A. Pisov, Maxim Krivov, Egor Belyaev, Mikhail Monteiro, Miguel Oliveira, Arlindo Choi, Youngwon Paik, Myunghee Cho Kwon, Yongchan Lee, Hanbyul Kim, Beom Joon Won, Joong-Ho Islam, Mobarakol Ren, Hongliang Robben, David Suetens, Paul Gong, Enhao Niu, Yilin Xu, Junshen Pauly, John M. Lucas, Christian Heinrich, Mattias P. Rivera, Luis C. Castillo, Laura S. Daza, Laura A. Beers, Andrew L. Arbelaezs, Pablo Maier, Oskar Chang, Ken Brown, James M. Kalpathy-Cramer, Jayashree Zaharchuk, Greg Wiest, Roland Reyes, Mauricio |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Winzeck, Stefan Hakim, Arsany McKinley, Richard Pinto, José A. A. D. S. R. Alves, Victor Silva, Carlos A. Pisov, Maxim Krivov, Egor Belyaev, Mikhail Monteiro, Miguel Oliveira, Arlindo Choi, Youngwon Paik, Myunghee Cho Kwon, Yongchan Lee, Hanbyul Kim, Beom Joon Won, Joong-Ho Islam, Mobarakol Ren, Hongliang Robben, David Suetens, Paul Gong, Enhao Niu, Yilin Xu, Junshen Pauly, John M. Lucas, Christian Heinrich, Mattias P. Rivera, Luis C. Castillo, Laura S. Daza, Laura A. Beers, Andrew L. Arbelaezs, Pablo Maier, Oskar Chang, Ken Brown, James M. Kalpathy-Cramer, Jayashree Zaharchuk, Greg Wiest, Roland Reyes, Mauricio |
dc.subject.por.fl_str_mv |
stroke stroke outcome machine learning deep learning benchmarking datasets MRI prediction models Science & Technology |
topic |
stroke stroke outcome machine learning deep learning benchmarking datasets MRI prediction models Science & Technology |
description |
Performance of models highly depend not only on the used algorithm but also the data set it was applied to. This makes the comparison of newly developed tools to previously published approaches difficult. Either researchers need to implement others' algorithms first, to establish an adequate benchmark on their data, or a direct comparison of new and old techniques is infeasible. The Ischemic Stroke Lesion Segmentation (ISLES) challenge, which has ran now consecutively for 3 years, aims to address this problem of comparability. ISLES 2016 and 2017 focused on lesion outcome prediction after ischemic stroke: By providing a uniformly pre-processed data set, researchers from all over the world could apply their algorithm directly. A total of nine teams participated in ISLES 2015, and 15 teams participated in ISLES 2016. Their performance was evaluated in a fair and transparent way to identify the state-of-the-art among all submissions. Top ranked teams almost always employed deep learning tools, which were predominately convolutional neural networks (CNNs). Despite the great efforts, lesion outcome prediction persists challenging. The annotated data set remains publicly available and new approaches can be compared directly via the online evaluation system, serving as a continuing benchmark (www.isles-challenge.org). |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018 2018-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/65827 |
url |
http://hdl.handle.net/1822/65827 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1664-2295 10.3389/fneur.2018.00679 https://www.frontiersin.org/articles/10.3389/fneur.2018.00679/full |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media |
publisher.none.fl_str_mv |
Frontiers Media |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799132938036576256 |