Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
Autor(a) principal: | |
---|---|
Data de Publicação: | 2022 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
DOI: | 10.3390/jpm12050704 |
Texto Completo: | http://hdl.handle.net/10316/103347 https://doi.org/10.3390/jpm12050704 |
Resumo: | The purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages. |
id |
RCAP_c0abb85efb7f7f711f4d50833867443b |
---|---|
oai_identifier_str |
oai:estudogeral.uc.pt:10316/103347 |
network_acronym_str |
RCAP |
network_name_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository_id_str |
7160 |
spelling |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted ImagingHuntington’s diseasegrey matter densityfractional anisotropyclassificationsupport vector machinebasal gangliaThe purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages.2022-04-28info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/103347http://hdl.handle.net/10316/103347https://doi.org/10.3390/jpm12050704eng2075-4426Lavrador, Rui Filipe DavidJúlio, FilipaJanuário, CristinaCastelo Branco, MiguelCaetano, Ginainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-08T21:33:47Zoai:estudogeral.uc.pt:10316/103347Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:20:12.098796Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
title |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
spellingShingle |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging Lavrador, Rui Filipe David Huntington’s disease grey matter density fractional anisotropy classification support vector machine basal ganglia Lavrador, Rui Filipe David Huntington’s disease grey matter density fractional anisotropy classification support vector machine basal ganglia |
title_short |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
title_full |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
title_fullStr |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
title_full_unstemmed |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
title_sort |
Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging |
author |
Lavrador, Rui Filipe David |
author_facet |
Lavrador, Rui Filipe David Lavrador, Rui Filipe David Júlio, Filipa Januário, Cristina Castelo Branco, Miguel Caetano, Gina Júlio, Filipa Januário, Cristina Castelo Branco, Miguel Caetano, Gina |
author_role |
author |
author2 |
Júlio, Filipa Januário, Cristina Castelo Branco, Miguel Caetano, Gina |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Lavrador, Rui Filipe David Júlio, Filipa Januário, Cristina Castelo Branco, Miguel Caetano, Gina |
dc.subject.por.fl_str_mv |
Huntington’s disease grey matter density fractional anisotropy classification support vector machine basal ganglia |
topic |
Huntington’s disease grey matter density fractional anisotropy classification support vector machine basal ganglia |
description |
The purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-04-28 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10316/103347 http://hdl.handle.net/10316/103347 https://doi.org/10.3390/jpm12050704 |
url |
http://hdl.handle.net/10316/103347 https://doi.org/10.3390/jpm12050704 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
2075-4426 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
|
_version_ |
1822183395259580416 |
dc.identifier.doi.none.fl_str_mv |
10.3390/jpm12050704 |