Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging

Detalhes bibliográficos
Autor(a) principal: Lavrador, Rui Filipe David
Data de Publicação: 2022
Outros Autores: Júlio, Filipa, Januário, Cristina, Castelo Branco, Miguel, Caetano, Gina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/103347
https://doi.org/10.3390/jpm12050704
Resumo: The purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages.
id RCAP_c0abb85efb7f7f711f4d50833867443b
oai_identifier_str oai:estudogeral.uc.pt:10316/103347
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted ImagingHuntington’s diseasegrey matter densityfractional anisotropyclassificationsupport vector machinebasal gangliaThe purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages.2022-04-28info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/103347http://hdl.handle.net/10316/103347https://doi.org/10.3390/jpm12050704eng2075-4426Lavrador, Rui Filipe DavidJúlio, FilipaJanuário, CristinaCastelo Branco, MiguelCaetano, Ginainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-08T21:33:47Zoai:estudogeral.uc.pt:10316/103347Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:20:12.098796Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
title Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
spellingShingle Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
Lavrador, Rui Filipe David
Huntington’s disease
grey matter density
fractional anisotropy
classification
support vector machine
basal ganglia
title_short Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
title_full Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
title_fullStr Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
title_full_unstemmed Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
title_sort Classification of Huntington's Disease Stage with Features Derived from Structural and Diffusion-Weighted Imaging
author Lavrador, Rui Filipe David
author_facet Lavrador, Rui Filipe David
Júlio, Filipa
Januário, Cristina
Castelo Branco, Miguel
Caetano, Gina
author_role author
author2 Júlio, Filipa
Januário, Cristina
Castelo Branco, Miguel
Caetano, Gina
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Lavrador, Rui Filipe David
Júlio, Filipa
Januário, Cristina
Castelo Branco, Miguel
Caetano, Gina
dc.subject.por.fl_str_mv Huntington’s disease
grey matter density
fractional anisotropy
classification
support vector machine
basal ganglia
topic Huntington’s disease
grey matter density
fractional anisotropy
classification
support vector machine
basal ganglia
description The purpose of this study was to classify Huntington's disease (HD) stage using support vector machines and measures derived from T1- and diffusion-weighted imaging. The effects of feature selection approach and combination of imaging modalities are assessed. Fourteen premanifest-HD individuals (Pre-HD; on average > 20 years from estimated disease onset), eleven early-manifest HD (Early-HD) patients, and eighteen healthy controls (HC) participated in the study. We compared three feature selection approaches: (i) whole-brain segmented grey matter (GM; voxel-based measure) or fractional anisotropy (FA) values; (ii) GM or FA values from subcortical regions-of-interest (caudate, putamen, pallidum); and (iii) automated selection of GM or FA values with the algorithm Relief-F. We assessed single- and multi-kernel approaches to classify combined GM and FA measures. Significant classifications were achieved between Early-HD and Pre-HD or HC individuals (accuracy: generally, 85% to 95%), and between Pre-HD and controls for the feature FA of the caudate ROI (74% accuracy). The combination of GM and FA measures did not result in higher performances. We demonstrate evidence on the high sensitivity of FA for the classification of the earliest Pre-HD stages, and successful distinction between HD stages.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-28
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/103347
http://hdl.handle.net/10316/103347
https://doi.org/10.3390/jpm12050704
url http://hdl.handle.net/10316/103347
https://doi.org/10.3390/jpm12050704
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2075-4426
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799134095162212352