μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives

Detalhes bibliográficos
Autor(a) principal: Hughes, Nathan
Data de Publicação: 2019
Outros Autores: R. Oliveira, Hugo, Fradgley, Nick, Corke, Fiona M K, Cockram, James, Doonan, John H, Nibau, Candida
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/12654
Resumo: Wheat and barley are two of the founder crops domesticated in the Fertile Crescent, and currently represent crops of major economic importance in temperate regions. Due to impacts on yield, quality and end-use, grain morphometric traits remain an important goal for modern breeding programmes and are believed to have been selected for by human populations. To directly and accurately assess the three-dimensional (3D) characteristics of grains, we combine X-ray microcomputed tomography (μCT) imaging techniques with bespoke image analysis tools and mathematical modelling to investigate how grain size and shape vary across wild and domesticated wheat and barley. We find that grain depth and, to a lesser extent, width are major drivers of shape change and that these traits are still relatively plastic in modern bread wheat varieties. Significant changes in grain depth are also observed to be associated with differences in ploidy. Finally, we present a model that can accurately predict the wild or domesticated status of a grain from a given taxa based on the relationship between three morphometric parameters (length, width and depth) and suggest its general applicability to both archaeological identification studies and breeding programmes.
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spelling μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relativesX-ray microcomputed tomographyWheatDomesticationGrain traitsPhenomicsBarleyWheat and barley are two of the founder crops domesticated in the Fertile Crescent, and currently represent crops of major economic importance in temperate regions. Due to impacts on yield, quality and end-use, grain morphometric traits remain an important goal for modern breeding programmes and are believed to have been selected for by human populations. To directly and accurately assess the three-dimensional (3D) characteristics of grains, we combine X-ray microcomputed tomography (μCT) imaging techniques with bespoke image analysis tools and mathematical modelling to investigate how grain size and shape vary across wild and domesticated wheat and barley. We find that grain depth and, to a lesser extent, width are major drivers of shape change and that these traits are still relatively plastic in modern bread wheat varieties. Significant changes in grain depth are also observed to be associated with differences in ploidy. Finally, we present a model that can accurately predict the wild or domesticated status of a grain from a given taxa based on the relationship between three morphometric parameters (length, width and depth) and suggest its general applicability to both archaeological identification studies and breeding programmes.Agências financiadoras: Biotechnology and Biological Sciences Research Council (BBSRC) grant, 'National Capability in Crop Phenotyping' (BB/J004464/1); (BB/CAP1730/1) BBSRC grant, 'MAGIC CARPET' (BB/M011666/1) NERC (NE/M010805/1) ERC (339941)WileySapientiaHughes, NathanR. Oliveira, HugoFradgley, NickCorke, Fiona M KCockram, JamesDoonan, John HNibau, Candida2019-07-12T12:33:56Z2019-072019-07-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/12654eng0960-741210.1111/tpj.14312info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:24:38Zoai:sapientia.ualg.pt:10400.1/12654Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:03:58.132688Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
title μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
spellingShingle μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
Hughes, Nathan
X-ray microcomputed tomography
Wheat
Domestication
Grain traits
Phenomics
Barley
title_short μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
title_full μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
title_fullStr μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
title_full_unstemmed μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
title_sort μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
author Hughes, Nathan
author_facet Hughes, Nathan
R. Oliveira, Hugo
Fradgley, Nick
Corke, Fiona M K
Cockram, James
Doonan, John H
Nibau, Candida
author_role author
author2 R. Oliveira, Hugo
Fradgley, Nick
Corke, Fiona M K
Cockram, James
Doonan, John H
Nibau, Candida
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Hughes, Nathan
R. Oliveira, Hugo
Fradgley, Nick
Corke, Fiona M K
Cockram, James
Doonan, John H
Nibau, Candida
dc.subject.por.fl_str_mv X-ray microcomputed tomography
Wheat
Domestication
Grain traits
Phenomics
Barley
topic X-ray microcomputed tomography
Wheat
Domestication
Grain traits
Phenomics
Barley
description Wheat and barley are two of the founder crops domesticated in the Fertile Crescent, and currently represent crops of major economic importance in temperate regions. Due to impacts on yield, quality and end-use, grain morphometric traits remain an important goal for modern breeding programmes and are believed to have been selected for by human populations. To directly and accurately assess the three-dimensional (3D) characteristics of grains, we combine X-ray microcomputed tomography (μCT) imaging techniques with bespoke image analysis tools and mathematical modelling to investigate how grain size and shape vary across wild and domesticated wheat and barley. We find that grain depth and, to a lesser extent, width are major drivers of shape change and that these traits are still relatively plastic in modern bread wheat varieties. Significant changes in grain depth are also observed to be associated with differences in ploidy. Finally, we present a model that can accurately predict the wild or domesticated status of a grain from a given taxa based on the relationship between three morphometric parameters (length, width and depth) and suggest its general applicability to both archaeological identification studies and breeding programmes.
publishDate 2019
dc.date.none.fl_str_mv 2019-07-12T12:33:56Z
2019-07
2019-07-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/12654
url http://hdl.handle.net/10400.1/12654
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0960-7412
10.1111/tpj.14312
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
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instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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