ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)

Detalhes bibliográficos
Autor(a) principal: Capote, Tiago
Data de Publicação: 2018
Outros Autores: Barbosa, Pedro, Usié, Ana, Ramos, António Marcos, Inácio, Vera, Ordás, Ricardo, Gonçalves, Sónia, Morais-Cecilio, Leonor
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.5/16042
Resumo: Research Article
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spelling ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)cork oakchromatin-immunoprecipitationtranscription factorR2R3-MYBABCG-transporterslipid-protein transportersResearch ArticleBackground: Gene activity is largely controlled by transcriptional regulation through the action of transcription factors and other regulators. QsMYB1 is a member of the R2R3-MYB transcription factor family related to secondary growth, and in particular, with the cork development process. In order to identify the putative gene targets of QsMYB1 across the cork oak genome we developed a ChIP-Seq strategy. Results: Results provide direct evidence that QsMY1B targets genes encoding for enzymes involved in the lignin and suberin pathways as well as gene encoding for ABCG transporters and LTPs implicated in the transport of monomeric suberin units across the cellular membrane. These results highlight the role of QsMYB1 as a regulator of lignin and suberin biosynthesis, transport and assembly. Conclusion: To our knowledge, this work constitutes the first ChIP-Seq experiment performed in cork oak, a non-model plant species with a long-life cycle, and these results will contribute to deepen the knowledge about the molecular mechanisms of cork formation and differentiationBMCRepositório da Universidade de LisboaCapote, TiagoBarbosa, PedroUsié, AnaRamos, António MarcosInácio, VeraOrdás, RicardoGonçalves, SóniaMorais-Cecilio, Leonor2018-10-08T13:57:10Z20182018-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.5/16042engCapote et al. BMC Plant Biology (2018) 18:198https://doi.org/10.1186/s12870-018-1403-5info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-10-22T01:31:51Zoai:www.repository.utl.pt:10400.5/16042Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:01:32.843878Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
title ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
spellingShingle ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
Capote, Tiago
cork oak
chromatin-immunoprecipitation
transcription factor
R2R3-MYB
ABCG-transporters
lipid-protein transporters
title_short ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
title_full ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
title_fullStr ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
title_full_unstemmed ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
title_sort ChlP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber)
author Capote, Tiago
author_facet Capote, Tiago
Barbosa, Pedro
Usié, Ana
Ramos, António Marcos
Inácio, Vera
Ordás, Ricardo
Gonçalves, Sónia
Morais-Cecilio, Leonor
author_role author
author2 Barbosa, Pedro
Usié, Ana
Ramos, António Marcos
Inácio, Vera
Ordás, Ricardo
Gonçalves, Sónia
Morais-Cecilio, Leonor
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Capote, Tiago
Barbosa, Pedro
Usié, Ana
Ramos, António Marcos
Inácio, Vera
Ordás, Ricardo
Gonçalves, Sónia
Morais-Cecilio, Leonor
dc.subject.por.fl_str_mv cork oak
chromatin-immunoprecipitation
transcription factor
R2R3-MYB
ABCG-transporters
lipid-protein transporters
topic cork oak
chromatin-immunoprecipitation
transcription factor
R2R3-MYB
ABCG-transporters
lipid-protein transporters
description Research Article
publishDate 2018
dc.date.none.fl_str_mv 2018-10-08T13:57:10Z
2018
2018-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.5/16042
url http://hdl.handle.net/10400.5/16042
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Capote et al. BMC Plant Biology (2018) 18:198
https://doi.org/10.1186/s12870-018-1403-5
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BMC
publisher.none.fl_str_mv BMC
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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