Extracting Adverse Drug Effects from User Experiences: A Baseline

Detalhes bibliográficos
Autor(a) principal: Abrantes, Diogo
Data de Publicação: 2018
Outros Autores: Cordeiro, João
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.6/9114
Resumo: It has been proved that pharmacovigilance benefits from the analysis and extraction of user-generated data from blogs, medical forums or other social networks, regarding adverse effect mentions or complaints that occur from taking certain drugs. Data mining, machine learning, pattern recognition, content summarization, and natural language processing techniques are often used in this field with promising results. However, there are still several difficulties concerning the extraction, as the highly domain-specific vocabulary presents a few challenges. This is mainly because patients like to use idiomatic or vernacular expressions along with descriptive symptom explanations, which tend to deviate from grammatical rules or expected terms. To address this issue, we propose a well-curated baseline. We believe that building a specific lexicon, identifying common linguistic patterns and observing certain phrasal structures is key to first understanding how a user generates contents online. From there, we can later develop sets of tailored rules that will allow data classification/extraction systems to potentially improve their efficiency at these tasks.
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spelling Extracting Adverse Drug Effects from User Experiences: A BaselinePharmacovigilanceAdverse effectsInformation extractionNatural language processingIt has been proved that pharmacovigilance benefits from the analysis and extraction of user-generated data from blogs, medical forums or other social networks, regarding adverse effect mentions or complaints that occur from taking certain drugs. Data mining, machine learning, pattern recognition, content summarization, and natural language processing techniques are often used in this field with promising results. However, there are still several difficulties concerning the extraction, as the highly domain-specific vocabulary presents a few challenges. This is mainly because patients like to use idiomatic or vernacular expressions along with descriptive symptom explanations, which tend to deviate from grammatical rules or expected terms. To address this issue, we propose a well-curated baseline. We believe that building a specific lexicon, identifying common linguistic patterns and observing certain phrasal structures is key to first understanding how a user generates contents online. From there, we can later develop sets of tailored rules that will allow data classification/extraction systems to potentially improve their efficiency at these tasks.This work was supported by Project NORTE-01- 0145-FEDER-000016 (NanoSTIMA), which is financed by the North Portugal Regional Operational Programme (NORTE2020), under the PORTUGAL 2020 Partnership Agreement, and through the European Regional Development Fund (ERDF)Institute of Electrical and Electronics EngineersuBibliorumAbrantes, DiogoCordeiro, João2020-02-07T14:03:13Z2018-06-182018-06-18T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.6/9114engD. Abrantes and J. Cordeiro, "Extracting Adverse Drug Effects from User Experiences: A Baseline," 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, 2018, pp. 405-410.10.1109/CBMS.2018.00077metadata only accessinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-14T04:24:31Zoai:ubibliorum.ubi.pt:10400.6/9114Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T00:49:20.332654Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Extracting Adverse Drug Effects from User Experiences: A Baseline
title Extracting Adverse Drug Effects from User Experiences: A Baseline
spellingShingle Extracting Adverse Drug Effects from User Experiences: A Baseline
Abrantes, Diogo
Pharmacovigilance
Adverse effects
Information extraction
Natural language processing
title_short Extracting Adverse Drug Effects from User Experiences: A Baseline
title_full Extracting Adverse Drug Effects from User Experiences: A Baseline
title_fullStr Extracting Adverse Drug Effects from User Experiences: A Baseline
title_full_unstemmed Extracting Adverse Drug Effects from User Experiences: A Baseline
title_sort Extracting Adverse Drug Effects from User Experiences: A Baseline
author Abrantes, Diogo
author_facet Abrantes, Diogo
Cordeiro, João
author_role author
author2 Cordeiro, João
author2_role author
dc.contributor.none.fl_str_mv uBibliorum
dc.contributor.author.fl_str_mv Abrantes, Diogo
Cordeiro, João
dc.subject.por.fl_str_mv Pharmacovigilance
Adverse effects
Information extraction
Natural language processing
topic Pharmacovigilance
Adverse effects
Information extraction
Natural language processing
description It has been proved that pharmacovigilance benefits from the analysis and extraction of user-generated data from blogs, medical forums or other social networks, regarding adverse effect mentions or complaints that occur from taking certain drugs. Data mining, machine learning, pattern recognition, content summarization, and natural language processing techniques are often used in this field with promising results. However, there are still several difficulties concerning the extraction, as the highly domain-specific vocabulary presents a few challenges. This is mainly because patients like to use idiomatic or vernacular expressions along with descriptive symptom explanations, which tend to deviate from grammatical rules or expected terms. To address this issue, we propose a well-curated baseline. We believe that building a specific lexicon, identifying common linguistic patterns and observing certain phrasal structures is key to first understanding how a user generates contents online. From there, we can later develop sets of tailored rules that will allow data classification/extraction systems to potentially improve their efficiency at these tasks.
publishDate 2018
dc.date.none.fl_str_mv 2018-06-18
2018-06-18T00:00:00Z
2020-02-07T14:03:13Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.6/9114
url http://hdl.handle.net/10400.6/9114
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv D. Abrantes and J. Cordeiro, "Extracting Adverse Drug Effects from User Experiences: A Baseline," 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, 2018, pp. 405-410.
10.1109/CBMS.2018.00077
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dc.publisher.none.fl_str_mv Institute of Electrical and Electronics Engineers
publisher.none.fl_str_mv Institute of Electrical and Electronics Engineers
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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