Implementation of a Functional Semantic Similarity Measure between Gene-Products

Detalhes bibliográficos
Autor(a) principal: Couto, Francisco M.
Data de Publicação: 2003
Outros Autores: Silva, Mário J., Coutinho, Pedro M.
Tipo de documento: Relatório
Idioma: por
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/14233
Resumo: Sequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/
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spelling Implementation of a Functional Semantic Similarity Measure between Gene-ProductsSequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/Department of Informatics, University of LisbonRepositório da Universidade de LisboaCouto, Francisco M.Silva, Mário J.Coutinho, Pedro M.2009-02-10T13:11:44Z2003-112003-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/reportapplication/pdfhttp://hdl.handle.net/10451/14233porinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T15:59:55Zoai:repositorio.ul.pt:10451/14233Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:36:03.449481Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Implementation of a Functional Semantic Similarity Measure between Gene-Products
title Implementation of a Functional Semantic Similarity Measure between Gene-Products
spellingShingle Implementation of a Functional Semantic Similarity Measure between Gene-Products
Couto, Francisco M.
title_short Implementation of a Functional Semantic Similarity Measure between Gene-Products
title_full Implementation of a Functional Semantic Similarity Measure between Gene-Products
title_fullStr Implementation of a Functional Semantic Similarity Measure between Gene-Products
title_full_unstemmed Implementation of a Functional Semantic Similarity Measure between Gene-Products
title_sort Implementation of a Functional Semantic Similarity Measure between Gene-Products
author Couto, Francisco M.
author_facet Couto, Francisco M.
Silva, Mário J.
Coutinho, Pedro M.
author_role author
author2 Silva, Mário J.
Coutinho, Pedro M.
author2_role author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Couto, Francisco M.
Silva, Mário J.
Coutinho, Pedro M.
description Sequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/
publishDate 2003
dc.date.none.fl_str_mv 2003-11
2003-11-01T00:00:00Z
2009-02-10T13:11:44Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/report
format report
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/14233
url http://hdl.handle.net/10451/14233
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Department of Informatics, University of Lisbon
publisher.none.fl_str_mv Department of Informatics, University of Lisbon
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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