Implementation of a Functional Semantic Similarity Measure between Gene-Products
Autor(a) principal: | |
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Data de Publicação: | 2003 |
Outros Autores: | , |
Tipo de documento: | Relatório |
Idioma: | por |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10451/14233 |
Resumo: | Sequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/ |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Implementation of a Functional Semantic Similarity Measure between Gene-ProductsSequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/Department of Informatics, University of LisbonRepositório da Universidade de LisboaCouto, Francisco M.Silva, Mário J.Coutinho, Pedro M.2009-02-10T13:11:44Z2003-112003-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/reportapplication/pdfhttp://hdl.handle.net/10451/14233porinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T15:59:55Zoai:repositorio.ul.pt:10451/14233Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:36:03.449481Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
title |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
spellingShingle |
Implementation of a Functional Semantic Similarity Measure between Gene-Products Couto, Francisco M. |
title_short |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
title_full |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
title_fullStr |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
title_full_unstemmed |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
title_sort |
Implementation of a Functional Semantic Similarity Measure between Gene-Products |
author |
Couto, Francisco M. |
author_facet |
Couto, Francisco M. Silva, Mário J. Coutinho, Pedro M. |
author_role |
author |
author2 |
Silva, Mário J. Coutinho, Pedro M. |
author2_role |
author author |
dc.contributor.none.fl_str_mv |
Repositório da Universidade de Lisboa |
dc.contributor.author.fl_str_mv |
Couto, Francisco M. Silva, Mário J. Coutinho, Pedro M. |
description |
Sequence similarity is a common technique to compare gene-products. However, many applications need to compare gene-products based on what they do, not how they are. Most gene-products are being annotated with terms describing their biological function. These terms are defined in biological ontologies. This makes it possible to implement similarity measures between gene-products based on their behavior. We define FuSSiMeG, a functional similarity measure between gene-products that compares the semantic similarity between the terms in their annotations. Software available from http://xldb.fc.ul.pt/rebil/ssm/ |
publishDate |
2003 |
dc.date.none.fl_str_mv |
2003-11 2003-11-01T00:00:00Z 2009-02-10T13:11:44Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/report |
format |
report |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10451/14233 |
url |
http://hdl.handle.net/10451/14233 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Department of Informatics, University of Lisbon |
publisher.none.fl_str_mv |
Department of Informatics, University of Lisbon |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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