Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10316/109509 https://doi.org/10.1186/2040-2392-5-28 |
Resumo: | Background: Validating the potential pathogenicity of copy number variants (CNVs) identified in genome-wide studies of autism spectrum disorders (ASD) requires detailed assessment of case/control frequencies, inheritance patterns, clinical correlations, and functional impact. Here, we characterize a small recurrent duplication in the annexin A1 (ANXA1) gene, identified by the Autism Genome Project (AGP) study. Methods: From the AGP CNV genomic screen in 2,147 ASD individuals, we selected for characterization an ANXA1 gene duplication that was absent in 4,964 population-based controls. We further screened the duplication in a follow-up sample including 1,496 patients and 410 controls, and evaluated clinical correlations and family segregation. Sequencing of exonic/downstream ANXA1 regions was performed in 490 ASD patients for identification of additional variants. Results: The ANXA1 duplication, overlapping the last four exons and 3’UTR region, had an overall prevalence of 11/ 3,643 (0.30%) in unrelated ASD patients but was not identified in 5,374 controls. Duplication carriers presented no distinctive clinical phenotype. Family analysis showed neuropsychiatric deficits and ASD traits in multiple relatives carrying the duplication, suggestive of a complex genetic inheritance. Sequencing of exonic regions and the 3’UTR identified 11 novel changes, but no obvious variants with clinical significance. Conclusions: We provide multilevel evidence for a role of ANXA1 in ASD etiology. Given its important role as mediator of glucocorticoid function in a wide variety of brain processes, including neuroprotection, apoptosis, and control of the neuroendocrine system, the results add ANXA1 to the growing list of rare candidate genetic etiological factors for ASD. |
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Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disordersANXA1AutismBrain homeostasisCopy number variantsDuplicationGlucocorticoidsBackground: Validating the potential pathogenicity of copy number variants (CNVs) identified in genome-wide studies of autism spectrum disorders (ASD) requires detailed assessment of case/control frequencies, inheritance patterns, clinical correlations, and functional impact. Here, we characterize a small recurrent duplication in the annexin A1 (ANXA1) gene, identified by the Autism Genome Project (AGP) study. Methods: From the AGP CNV genomic screen in 2,147 ASD individuals, we selected for characterization an ANXA1 gene duplication that was absent in 4,964 population-based controls. We further screened the duplication in a follow-up sample including 1,496 patients and 410 controls, and evaluated clinical correlations and family segregation. Sequencing of exonic/downstream ANXA1 regions was performed in 490 ASD patients for identification of additional variants. Results: The ANXA1 duplication, overlapping the last four exons and 3’UTR region, had an overall prevalence of 11/ 3,643 (0.30%) in unrelated ASD patients but was not identified in 5,374 controls. Duplication carriers presented no distinctive clinical phenotype. Family analysis showed neuropsychiatric deficits and ASD traits in multiple relatives carrying the duplication, suggestive of a complex genetic inheritance. Sequencing of exonic regions and the 3’UTR identified 11 novel changes, but no obvious variants with clinical significance. Conclusions: We provide multilevel evidence for a role of ANXA1 in ASD etiology. Given its important role as mediator of glucocorticoid function in a wide variety of brain processes, including neuroprotection, apoptosis, and control of the neuroendocrine system, the results add ANXA1 to the growing list of rare candidate genetic etiological factors for ASD.We gratefully acknowledge the children with ASD and their families for their collaboration. We thank the AGP investigators for sharing data, resources, and scientific discussions. The AGP study was funded by Autism Speaks (USA), the Health Research Board (HRB, Ireland; AUT/2006/1, AUT/2006/2, PD/2006/48), The Medical Research Council (MRC, UK), Genome Canada/ Ontario Genomics Institute and the Hilibrand Foundation (USA). Additional support for individual groups was provided by the US National Institutes of Health (NIH Grants: HD055751, HD055782, HD055784, MH52708, MH55284, MH061009, MH06359, MH066673, MH080647, MH081754, MH66766, NS026630, NS042165, NS049261), the Canadian Institutes for Health Research (CIHR), Assistance Publique – Hôpitaux de Paris (France), Autism Speaks UK, Canada Foundation for Innovation/Ontario Innovation Trust, Deutsche Forschungsgemeinschaft (Grant: Po 255/17-4) (Germany), EC Sixth FP AUTISM MOLGEN, Fundação Calouste Gulbenkian (Portugal), Fondation de France, Fondation FondaMental (France), Fondation Orange (France), Fondation pour la Recherche Médicale (France), Fundação para a Ciência e Tecnologia (Portugal), the Hospital for Sick Children Foundation and University of Toronto (Canada), INSERM (France), Institut Pasteur (France), the Italian Ministry of Health (convention 181 of 19 October 2001), the John P Hussman Foundation (USA), McLaughlin Centre (Canada), Ontario Ministry of Research and Innovation (Canada), the Seaver Foundation (USA), the Swedish Science Council, the Centre for Applied Genomics (Canada), the Utah Autism Foundation (USA), and the Wellcome Trust core award 075491/Z/04 (UK). We gratefully acknowledge the resources provided by the Autism Genetic Resource Exchange (AGRE) Consortium and the participating AGRE families. The Autism Genetic Resource Exchange is a program of Autism Speaks and is supported, in part, by grant 1U24MH081810 from the National Institute of Mental Health to Clara M. Lajonchere (PI). Catarina Correia and Inês C. Conceição are supported by grants SFRH/BPD/64281/2009 and SFRH/BPD/ 74739/2010, respectively, from Fundação para a Ciência e Tecnologia. Ethical approval was obtained from: i) the Ethics Committee at Hospital Pediátrico de Coimbra (Portugal) for the Portuguese cases not included in AGP; ii) the Ethics Committee at the Instituto Nacional de Saúde Doutor Ricardo Jorge (Portugal) for the Portuguese controls; and iii) the Institutional Review Board at UCLA for the AGRE sample. The control data from OHI, approved by the Research Ethics Board of the University of Ottawa Heart Institute; PopGen, approved by the Ethics Committee of the Medical Faculty of Kiel and by the data protection officer of the University Hospital Schleswig-Holstein; CHOP, approved by the Children’s Hospital of Philadelphia Institutional Review Board; and SAGE, approved by the Institutional Review Board at each contributing institution (COGA, FSCD, and COGEND) are published and available. The AGP data involves several research centres and has already been published; the data is available.Springer Nature2014-04-10info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/109509http://hdl.handle.net/10316/109509https://doi.org/10.1186/2040-2392-5-28eng2040-2392Correia, Catarina T.Conceição, Inês C.Oliveira, BárbaraCoelho, JoanaSousa, InêsSequeira, Ana F.Almeida, JoanaCafé, CátiaDuque, FredericoMouga, SusanaRoberts, WendyGao, KunLowe, Jennifer K.Thiruvahindrapuram, BhoomaWalker, SusanMarshall, Christian R.Pinto, DalilaNurnberger, John I.Scherer, Stephen W.Geschwind, Daniel H.Oliveira, GuiomarVicente, Astrid M.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-10-18T09:55:43Zoai:estudogeral.uc.pt:10316/109509Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:25:41.717486Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
title |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
spellingShingle |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders Correia, Catarina T. ANXA1 Autism Brain homeostasis Copy number variants Duplication Glucocorticoids |
title_short |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
title_full |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
title_fullStr |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
title_full_unstemmed |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
title_sort |
Recurrent duplications of the annexin A1 gene (ANXA1) in autism spectrum disorders |
author |
Correia, Catarina T. |
author_facet |
Correia, Catarina T. Conceição, Inês C. Oliveira, Bárbara Coelho, Joana Sousa, Inês Sequeira, Ana F. Almeida, Joana Café, Cátia Duque, Frederico Mouga, Susana Roberts, Wendy Gao, Kun Lowe, Jennifer K. Thiruvahindrapuram, Bhooma Walker, Susan Marshall, Christian R. Pinto, Dalila Nurnberger, John I. Scherer, Stephen W. Geschwind, Daniel H. Oliveira, Guiomar Vicente, Astrid M. |
author_role |
author |
author2 |
Conceição, Inês C. Oliveira, Bárbara Coelho, Joana Sousa, Inês Sequeira, Ana F. Almeida, Joana Café, Cátia Duque, Frederico Mouga, Susana Roberts, Wendy Gao, Kun Lowe, Jennifer K. Thiruvahindrapuram, Bhooma Walker, Susan Marshall, Christian R. Pinto, Dalila Nurnberger, John I. Scherer, Stephen W. Geschwind, Daniel H. Oliveira, Guiomar Vicente, Astrid M. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Correia, Catarina T. Conceição, Inês C. Oliveira, Bárbara Coelho, Joana Sousa, Inês Sequeira, Ana F. Almeida, Joana Café, Cátia Duque, Frederico Mouga, Susana Roberts, Wendy Gao, Kun Lowe, Jennifer K. Thiruvahindrapuram, Bhooma Walker, Susan Marshall, Christian R. Pinto, Dalila Nurnberger, John I. Scherer, Stephen W. Geschwind, Daniel H. Oliveira, Guiomar Vicente, Astrid M. |
dc.subject.por.fl_str_mv |
ANXA1 Autism Brain homeostasis Copy number variants Duplication Glucocorticoids |
topic |
ANXA1 Autism Brain homeostasis Copy number variants Duplication Glucocorticoids |
description |
Background: Validating the potential pathogenicity of copy number variants (CNVs) identified in genome-wide studies of autism spectrum disorders (ASD) requires detailed assessment of case/control frequencies, inheritance patterns, clinical correlations, and functional impact. Here, we characterize a small recurrent duplication in the annexin A1 (ANXA1) gene, identified by the Autism Genome Project (AGP) study. Methods: From the AGP CNV genomic screen in 2,147 ASD individuals, we selected for characterization an ANXA1 gene duplication that was absent in 4,964 population-based controls. We further screened the duplication in a follow-up sample including 1,496 patients and 410 controls, and evaluated clinical correlations and family segregation. Sequencing of exonic/downstream ANXA1 regions was performed in 490 ASD patients for identification of additional variants. Results: The ANXA1 duplication, overlapping the last four exons and 3’UTR region, had an overall prevalence of 11/ 3,643 (0.30%) in unrelated ASD patients but was not identified in 5,374 controls. Duplication carriers presented no distinctive clinical phenotype. Family analysis showed neuropsychiatric deficits and ASD traits in multiple relatives carrying the duplication, suggestive of a complex genetic inheritance. Sequencing of exonic regions and the 3’UTR identified 11 novel changes, but no obvious variants with clinical significance. Conclusions: We provide multilevel evidence for a role of ANXA1 in ASD etiology. Given its important role as mediator of glucocorticoid function in a wide variety of brain processes, including neuroprotection, apoptosis, and control of the neuroendocrine system, the results add ANXA1 to the growing list of rare candidate genetic etiological factors for ASD. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-04-10 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10316/109509 http://hdl.handle.net/10316/109509 https://doi.org/10.1186/2040-2392-5-28 |
url |
http://hdl.handle.net/10316/109509 https://doi.org/10.1186/2040-2392-5-28 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
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2040-2392 |
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info:eu-repo/semantics/openAccess |
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openAccess |
dc.publisher.none.fl_str_mv |
Springer Nature |
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Springer Nature |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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