Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia

Detalhes bibliográficos
Autor(a) principal: Stahlschmidt, M. C.
Data de Publicação: 2019
Outros Autores: Collin, T. C., Fernandes, D. M., Bar-Oz, G., Belfer-Cohen, A., Gao, Z., Jakeli, N., Matskevich, Z., Meshveliani, T., Pritchard, J. K., McDermott, F., Pinhasi, R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/107379
https://doi.org/10.1038/s41598-019-43147-0
Resumo: Metagenomic analysis is a highly promising technique in paleogenetic research that allows analysis of the complete genomic make-up of a sample. This technique has successfully been employed to archaeological sediments, but possible leaching of DNA through the sequence limits interpretation. We applied this technique to the analysis of ancient DNA (aDNA) from Late Quaternary stalagmites from two caves in Western Georgia, Melouri Cave and Solkota. Stalagmites form closed systems, limiting the effect of leaching, and can be securely dated with U-series. The analyses of the sequence data from the Melouri Cave stalagmite revealed potential contamination and low preservation of DNA. However, the two Solkota stalagmites preserved ancient DNA molecules of mammals (bear, roe deer, bats) and plants (chestnut, hazelnut, flax). The aDNA bearing layers from one of the two Solkota stalagmites were dated to between ~84 ka and ~56 ka BP by U-series. The second Solkota stalagmite contained excessive detrital clay obstructing U-series dating, but it also contained bear bones with a minimum age of ~50 BP uncalibrated years and ancient DNA molecules. The preservation of authentic ancient DNA molecules in Late Quaternary speleothems opens up a new paleogenetic archive for archaeological, paleontological and paleoenvironmental research.
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spelling Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, GeorgiaAnimalsDNA, PlantGeorgiaMammalsPaleontologyDNA, AncientMetagenomic analysis is a highly promising technique in paleogenetic research that allows analysis of the complete genomic make-up of a sample. This technique has successfully been employed to archaeological sediments, but possible leaching of DNA through the sequence limits interpretation. We applied this technique to the analysis of ancient DNA (aDNA) from Late Quaternary stalagmites from two caves in Western Georgia, Melouri Cave and Solkota. Stalagmites form closed systems, limiting the effect of leaching, and can be securely dated with U-series. The analyses of the sequence data from the Melouri Cave stalagmite revealed potential contamination and low preservation of DNA. However, the two Solkota stalagmites preserved ancient DNA molecules of mammals (bear, roe deer, bats) and plants (chestnut, hazelnut, flax). The aDNA bearing layers from one of the two Solkota stalagmites were dated to between ~84 ka and ~56 ka BP by U-series. The second Solkota stalagmite contained excessive detrital clay obstructing U-series dating, but it also contained bear bones with a minimum age of ~50 BP uncalibrated years and ancient DNA molecules. The preservation of authentic ancient DNA molecules in Late Quaternary speleothems opens up a new paleogenetic archive for archaeological, paleontological and paleoenvironmental research.Springer Nature2019-04-29info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/107379http://hdl.handle.net/10316/107379https://doi.org/10.1038/s41598-019-43147-0eng2045-2322Stahlschmidt, M. C.Collin, T. C.Fernandes, D. M.Bar-Oz, G.Belfer-Cohen, A.Gao, Z.Jakeli, N.Matskevich, Z.Meshveliani, T.Pritchard, J. K.McDermott, F.Pinhasi, R.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-06T11:18:53Zoai:estudogeral.uc.pt:10316/107379Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:23:44.539552Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
title Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
spellingShingle Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
Stahlschmidt, M. C.
Animals
DNA, Plant
Georgia
Mammals
Paleontology
DNA, Ancient
title_short Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
title_full Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
title_fullStr Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
title_full_unstemmed Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
title_sort Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia
author Stahlschmidt, M. C.
author_facet Stahlschmidt, M. C.
Collin, T. C.
Fernandes, D. M.
Bar-Oz, G.
Belfer-Cohen, A.
Gao, Z.
Jakeli, N.
Matskevich, Z.
Meshveliani, T.
Pritchard, J. K.
McDermott, F.
Pinhasi, R.
author_role author
author2 Collin, T. C.
Fernandes, D. M.
Bar-Oz, G.
Belfer-Cohen, A.
Gao, Z.
Jakeli, N.
Matskevich, Z.
Meshveliani, T.
Pritchard, J. K.
McDermott, F.
Pinhasi, R.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Stahlschmidt, M. C.
Collin, T. C.
Fernandes, D. M.
Bar-Oz, G.
Belfer-Cohen, A.
Gao, Z.
Jakeli, N.
Matskevich, Z.
Meshveliani, T.
Pritchard, J. K.
McDermott, F.
Pinhasi, R.
dc.subject.por.fl_str_mv Animals
DNA, Plant
Georgia
Mammals
Paleontology
DNA, Ancient
topic Animals
DNA, Plant
Georgia
Mammals
Paleontology
DNA, Ancient
description Metagenomic analysis is a highly promising technique in paleogenetic research that allows analysis of the complete genomic make-up of a sample. This technique has successfully been employed to archaeological sediments, but possible leaching of DNA through the sequence limits interpretation. We applied this technique to the analysis of ancient DNA (aDNA) from Late Quaternary stalagmites from two caves in Western Georgia, Melouri Cave and Solkota. Stalagmites form closed systems, limiting the effect of leaching, and can be securely dated with U-series. The analyses of the sequence data from the Melouri Cave stalagmite revealed potential contamination and low preservation of DNA. However, the two Solkota stalagmites preserved ancient DNA molecules of mammals (bear, roe deer, bats) and plants (chestnut, hazelnut, flax). The aDNA bearing layers from one of the two Solkota stalagmites were dated to between ~84 ka and ~56 ka BP by U-series. The second Solkota stalagmite contained excessive detrital clay obstructing U-series dating, but it also contained bear bones with a minimum age of ~50 BP uncalibrated years and ancient DNA molecules. The preservation of authentic ancient DNA molecules in Late Quaternary speleothems opens up a new paleogenetic archive for archaeological, paleontological and paleoenvironmental research.
publishDate 2019
dc.date.none.fl_str_mv 2019-04-29
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/107379
http://hdl.handle.net/10316/107379
https://doi.org/10.1038/s41598-019-43147-0
url http://hdl.handle.net/10316/107379
https://doi.org/10.1038/s41598-019-43147-0
dc.language.iso.fl_str_mv eng
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dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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