Diverse monogenic subforms of human spermatogenic failure
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.18/8492 |
Resumo: | Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification |
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Diverse monogenic subforms of human spermatogenic failureNon-obstructive AzoospermiaAzoospermiaSpermatogenesisMale InfertilitySpermatogoniaGenética HumanaDoenças GenéticasNon-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classificationThe study has been funded by the follow- ing resources. National Institutes of Health of the United States of America grant R01HD078641 (D.F.C, K.I.A) National Institutes of Health of the United States of America grant P50HD096723 (D.F.C.) National Health and Medical Research Council of Australia grant APP1120356 (M.O., D.C., K.I.A., R.M., and J.A.V.) Spanish Ministry of Health Instituto Carlos III-FIS grant FIS/FEDER- PI20/01562 (C.K., A.R.-E.). Estonian Research Council grants IUT34-12 and PRG1021 (M.L., M.P.) ReproUnion and the Innovation Fund Denmark grant 14-2013-4 (K.A.) German Research Foundation Clinical Research Unit ‘Male Germ Cells’ grant DFG CRU326 (C.F., F.T.) The Netherlands Organization for Scientific Research VICI grant 918-15-667 (J.A.V.) Investigator Award in Science from the Wellcome Trust grant 209451 (J.A.V.). FCT/MCTES, through national funds attributed to Centre for Toxicogenomics and Human Health—ToxOmics, grant UID/BIM/00009/2016 (J.Go.) National Insti- tute of Mental Health of the National Institutes of Health grant T32- MH014677 (W.-L.C).Nature ResearchRepositório Científico do Instituto Nacional de SaúdeNagirnaja, LiinaLopes, Alexandra M.Charng, Wu-LinMiller, BrianStakaitis, RytisGolubickaite, IevaStendahl, AlexandraLuan, TianpengchengFriedrich, CorinnaMahyari, EisaFadial, EloiseKasak, LauraVigh-Conrad, KatinkaOud, Manon S.Xavier, Miguel J.Cheers, Samuel R.James, Emma R.Guo, JingtaoJenkins, Timothy G.Riera-Escamilla, AntoniBarros, AlbertoCarvalho, FilipaFernandes, SusanaGonçalves, JoãoGurnett, Christina A.Jørgensen, NielsJezek, DavorJungheim, Emily S.Kliesch, SabineMcLachlan, Robert I.Omurtag, Kenan R.Pilatz, AdrianSandlow, Jay I.Smith, JamesEisenberg, Michael L.Hotaling, James M.Jarvi, Keith A.Punab, MargusRajpert-De Meyts, EwaCarrell, Douglas T.Krausz, CsillaLaan, MarisO’Bryan, Moira K.Schlegel, Peter N.Tüttelmann, FrankVeltman, Joris A.Almstrup, KristianAston, Kenneth I.Conrad, Donald F.2023-02-02T10:49:35Z2022-12-262022-12-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.18/8492engNat Commun. 2022 Dec 26;13(1):7953. doi: 10.1038/s41467-022-35661-z2041-172310.1038/s41467-022-35661-zinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-20T15:42:36Zoai:repositorio.insa.pt:10400.18/8492Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:43:08.398582Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Diverse monogenic subforms of human spermatogenic failure |
title |
Diverse monogenic subforms of human spermatogenic failure |
spellingShingle |
Diverse monogenic subforms of human spermatogenic failure Nagirnaja, Liina Non-obstructive Azoospermia Azoospermia Spermatogenesis Male Infertility Spermatogonia Genética Humana Doenças Genéticas |
title_short |
Diverse monogenic subforms of human spermatogenic failure |
title_full |
Diverse monogenic subforms of human spermatogenic failure |
title_fullStr |
Diverse monogenic subforms of human spermatogenic failure |
title_full_unstemmed |
Diverse monogenic subforms of human spermatogenic failure |
title_sort |
Diverse monogenic subforms of human spermatogenic failure |
author |
Nagirnaja, Liina |
author_facet |
Nagirnaja, Liina Lopes, Alexandra M. Charng, Wu-Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel J. Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O’Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
author_role |
author |
author2 |
Lopes, Alexandra M. Charng, Wu-Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel J. Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O’Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório Científico do Instituto Nacional de Saúde |
dc.contributor.author.fl_str_mv |
Nagirnaja, Liina Lopes, Alexandra M. Charng, Wu-Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel J. Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O’Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
dc.subject.por.fl_str_mv |
Non-obstructive Azoospermia Azoospermia Spermatogenesis Male Infertility Spermatogonia Genética Humana Doenças Genéticas |
topic |
Non-obstructive Azoospermia Azoospermia Spermatogenesis Male Infertility Spermatogonia Genética Humana Doenças Genéticas |
description |
Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-12-26 2022-12-26T00:00:00Z 2023-02-02T10:49:35Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.18/8492 |
url |
http://hdl.handle.net/10400.18/8492 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Nat Commun. 2022 Dec 26;13(1):7953. doi: 10.1038/s41467-022-35661-z 2041-1723 10.1038/s41467-022-35661-z |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Nature Research |
publisher.none.fl_str_mv |
Nature Research |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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