Diverse monogenic subforms of human spermatogenic failure

Detalhes bibliográficos
Autor(a) principal: Nagirnaja, Liina
Data de Publicação: 2022
Outros Autores: Lopes, Alexandra M., Charng, Wu-Lin, Miller, Brian, Stakaitis, Rytis, Golubickaite, Ieva, Stendahl, Alexandra, Luan, Tianpengcheng, Friedrich, Corinna, Mahyari, Eisa, Fadial, Eloise, Kasak, Laura, Vigh-Conrad, Katinka, Oud, Manon S., Xavier, Miguel J., Cheers, Samuel R., James, Emma R., Guo, Jingtao, Jenkins, Timothy G., Riera-Escamilla, Antoni, Barros, Alberto, Carvalho, Filipa, Fernandes, Susana, Gonçalves, João, Gurnett, Christina A., Jørgensen, Niels, Jezek, Davor, Jungheim, Emily S., Kliesch, Sabine, McLachlan, Robert I., Omurtag, Kenan R., Pilatz, Adrian, Sandlow, Jay I., Smith, James, Eisenberg, Michael L., Hotaling, James M., Jarvi, Keith A., Punab, Margus, Rajpert-De Meyts, Ewa, Carrell, Douglas T., Krausz, Csilla, Laan, Maris, O’Bryan, Moira K., Schlegel, Peter N., Tüttelmann, Frank, Veltman, Joris A., Almstrup, Kristian, Aston, Kenneth I., Conrad, Donald F.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.18/8492
Resumo: Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification
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spelling Diverse monogenic subforms of human spermatogenic failureNon-obstructive AzoospermiaAzoospermiaSpermatogenesisMale InfertilitySpermatogoniaGenética HumanaDoenças GenéticasNon-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classificationThe study has been funded by the follow- ing resources. National Institutes of Health of the United States of America grant R01HD078641 (D.F.C, K.I.A) National Institutes of Health of the United States of America grant P50HD096723 (D.F.C.) National Health and Medical Research Council of Australia grant APP1120356 (M.O., D.C., K.I.A., R.M., and J.A.V.) Spanish Ministry of Health Instituto Carlos III-FIS grant FIS/FEDER- PI20/01562 (C.K., A.R.-E.). Estonian Research Council grants IUT34-12 and PRG1021 (M.L., M.P.) ReproUnion and the Innovation Fund Denmark grant 14-2013-4 (K.A.) German Research Foundation Clinical Research Unit ‘Male Germ Cells’ grant DFG CRU326 (C.F., F.T.) The Netherlands Organization for Scientific Research VICI grant 918-15-667 (J.A.V.) Investigator Award in Science from the Wellcome Trust grant 209451 (J.A.V.). FCT/MCTES, through national funds attributed to Centre for Toxicogenomics and Human Health—ToxOmics, grant UID/BIM/00009/2016 (J.Go.) National Insti- tute of Mental Health of the National Institutes of Health grant T32- MH014677 (W.-L.C).Nature ResearchRepositório Científico do Instituto Nacional de SaúdeNagirnaja, LiinaLopes, Alexandra M.Charng, Wu-LinMiller, BrianStakaitis, RytisGolubickaite, IevaStendahl, AlexandraLuan, TianpengchengFriedrich, CorinnaMahyari, EisaFadial, EloiseKasak, LauraVigh-Conrad, KatinkaOud, Manon S.Xavier, Miguel J.Cheers, Samuel R.James, Emma R.Guo, JingtaoJenkins, Timothy G.Riera-Escamilla, AntoniBarros, AlbertoCarvalho, FilipaFernandes, SusanaGonçalves, JoãoGurnett, Christina A.Jørgensen, NielsJezek, DavorJungheim, Emily S.Kliesch, SabineMcLachlan, Robert I.Omurtag, Kenan R.Pilatz, AdrianSandlow, Jay I.Smith, JamesEisenberg, Michael L.Hotaling, James M.Jarvi, Keith A.Punab, MargusRajpert-De Meyts, EwaCarrell, Douglas T.Krausz, CsillaLaan, MarisO’Bryan, Moira K.Schlegel, Peter N.Tüttelmann, FrankVeltman, Joris A.Almstrup, KristianAston, Kenneth I.Conrad, Donald F.2023-02-02T10:49:35Z2022-12-262022-12-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.18/8492engNat Commun. 2022 Dec 26;13(1):7953. doi: 10.1038/s41467-022-35661-z2041-172310.1038/s41467-022-35661-zinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-20T15:42:36Zoai:repositorio.insa.pt:10400.18/8492Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:43:08.398582Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Diverse monogenic subforms of human spermatogenic failure
title Diverse monogenic subforms of human spermatogenic failure
spellingShingle Diverse monogenic subforms of human spermatogenic failure
Nagirnaja, Liina
Non-obstructive Azoospermia
Azoospermia
Spermatogenesis
Male Infertility
Spermatogonia
Genética Humana
Doenças Genéticas
title_short Diverse monogenic subforms of human spermatogenic failure
title_full Diverse monogenic subforms of human spermatogenic failure
title_fullStr Diverse monogenic subforms of human spermatogenic failure
title_full_unstemmed Diverse monogenic subforms of human spermatogenic failure
title_sort Diverse monogenic subforms of human spermatogenic failure
author Nagirnaja, Liina
author_facet Nagirnaja, Liina
Lopes, Alexandra M.
Charng, Wu-Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel J.
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O’Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
author_role author
author2 Lopes, Alexandra M.
Charng, Wu-Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel J.
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O’Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
author2_role author
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author
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author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
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author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Nacional de Saúde
dc.contributor.author.fl_str_mv Nagirnaja, Liina
Lopes, Alexandra M.
Charng, Wu-Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel J.
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O’Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
dc.subject.por.fl_str_mv Non-obstructive Azoospermia
Azoospermia
Spermatogenesis
Male Infertility
Spermatogonia
Genética Humana
Doenças Genéticas
topic Non-obstructive Azoospermia
Azoospermia
Spermatogenesis
Male Infertility
Spermatogonia
Genética Humana
Doenças Genéticas
description Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven chal lenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human “knockouts”, and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification
publishDate 2022
dc.date.none.fl_str_mv 2022-12-26
2022-12-26T00:00:00Z
2023-02-02T10:49:35Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.18/8492
url http://hdl.handle.net/10400.18/8492
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Nat Commun. 2022 Dec 26;13(1):7953. doi: 10.1038/s41467-022-35661-z
2041-1723
10.1038/s41467-022-35661-z
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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