Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity

Detalhes bibliográficos
Autor(a) principal: Clemente, Gonçalo
Data de Publicação: 2011
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.25758/set.344
Resumo: Background – Lipophilicity is one of the physicochemical properties that most influence the ability of a molecule to move through biological compartments. The octanol/water partition coefficient (log P) can give us an estimation of the drug absorption in the organism. The existence of indirect methods for a quick calculation of log P may have great importance in the analysis of lists of compounds with potential pharmacological action, reducing them to those that are expected to have better biological behavior. Objectives – The purpose of this work is to present a RP-HPLC chromatographic method developed for the indirect determination of molecular lipophilicity and evaluate the performance of different computational programs that calculate this same parameter. Methods – For this study were selected 25 compounds, then was evaluated the log P of each one by RP-HPLC and finally, the obtained results were compared with those calculated by seven computational programs. Results – The tested RP-HPLC method proved to be advantageous in comparison with the conventional shake flask technique. The indirect calculation program that provides results closest to the experimentally obtained was ALOGPS© 2.1. Conclusions – The ideal choice for determining the lipophilicity of compounds whose log P is estimated to be between 0 and 6 is the experimental indirect method by RP-HPLC, especially regarding the quickness and simplicity of this procedure. For the computational methods, it was concluded that none of the programs, including ALOGPS© 2.1, proved to be effective in the evaluation of isomers. For this kind of compounds, it will be always necessary the shake flask or the RP-HPLC technique.
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spelling Comparative study of experimental and computational procedures for the calculation of molecular lipophilicityEstudo comparativo de procedimentos experimentais e computacionais para cálculo da lipofilia molecularLipofiliaLog PRP-HPLCCálculo computacionalLipophilicityLog PRP-HPLCComputational calculationBackground – Lipophilicity is one of the physicochemical properties that most influence the ability of a molecule to move through biological compartments. The octanol/water partition coefficient (log P) can give us an estimation of the drug absorption in the organism. The existence of indirect methods for a quick calculation of log P may have great importance in the analysis of lists of compounds with potential pharmacological action, reducing them to those that are expected to have better biological behavior. Objectives – The purpose of this work is to present a RP-HPLC chromatographic method developed for the indirect determination of molecular lipophilicity and evaluate the performance of different computational programs that calculate this same parameter. Methods – For this study were selected 25 compounds, then was evaluated the log P of each one by RP-HPLC and finally, the obtained results were compared with those calculated by seven computational programs. Results – The tested RP-HPLC method proved to be advantageous in comparison with the conventional shake flask technique. The indirect calculation program that provides results closest to the experimentally obtained was ALOGPS© 2.1. Conclusions – The ideal choice for determining the lipophilicity of compounds whose log P is estimated to be between 0 and 6 is the experimental indirect method by RP-HPLC, especially regarding the quickness and simplicity of this procedure. For the computational methods, it was concluded that none of the programs, including ALOGPS© 2.1, proved to be effective in the evaluation of isomers. For this kind of compounds, it will be always necessary the shake flask or the RP-HPLC technique.Introdução – A lipofilia é uma das propriedades físico-químicas que mais influencia a capacidade de uma molécula se movimentar através de compartimentos biológicos. O coeficiente de partição octanol/água (log P) permite, assim, obter uma estimativa da absorção dos fármacos no organismo. A existência de métodos indirectos para um cálculo rápido do log P pode revelar-se de grande importância na análise de listas de compostos com potencial acção farmacológica, reduzindo-as àqueles que se prevêem ter um melhor comportamento biológico. Objectivos – O propósito deste estudo é dar a conhecer um método cromatográfico de RP-HPLC desenvolvido para a determinação indirecta da lipofilia molecular e avaliar a performance de vários programas de cálculo computacional desse mesmo parâmetro. Metodologias – Seleccionaram-se 25 compostos químicos, avaliou-se o log P de cada um deles por RP-HPLC e confrontaram-se os resultados obtidos com os de sete programas computacionais. Resultados – O método RP-HPLC testado demonstrou ser vantajoso em comparação com o convencional shake flask. O programa de cálculo indirecto que proporcionou resultados mais próximos dos experimentais foi o ALOGPS© 2.1. Conclusões – A escolha ideal para a determinação da lipofilia de compostos cujo log P estimado esteja entre 0 e 6 é, sobretudo no que diz respeito à rapidez e simplicidade do processo, o método experimental indirecto RP-HPLC. Quanto aos métodos computacionais concluiu-se que nenhum dos programas, incluindo o ALOGPS© 2.1, demonstrou ser eficaz na avaliação de isómeros pelo que, para estes compostos, será sempre necessário recorrer ao método shake flask ou RP-HPLC.Escola Superior de Tecnologia da Saúde de Lisboa (Instituto Politécnico de Lisboa)2011-05-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://doi.org/10.25758/set.344https://doi.org/10.25758/set.344Saúde e Tecnologia; No. 05 (2011): Maio 2011; 29-34Saúde & Tecnologia; N.º 05 (2011): Maio 2011; 29-341646-9704reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAPporhttps://journals.ipl.pt/stecnologia/article/view/708https://journals.ipl.pt/stecnologia/article/view/708/603Direitos de Autor (c) 2022 Saúde & Tecnologiainfo:eu-repo/semantics/openAccessClemente, Gonçalo2023-01-13T08:30:15Zoai:journals.ipl.pt:article/708Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:21:30.467467Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
Estudo comparativo de procedimentos experimentais e computacionais para cálculo da lipofilia molecular
title Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
spellingShingle Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
Clemente, Gonçalo
Lipofilia
Log P
RP-HPLC
Cálculo computacional
Lipophilicity
Log P
RP-HPLC
Computational calculation
title_short Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
title_full Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
title_fullStr Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
title_full_unstemmed Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
title_sort Comparative study of experimental and computational procedures for the calculation of molecular lipophilicity
author Clemente, Gonçalo
author_facet Clemente, Gonçalo
author_role author
dc.contributor.author.fl_str_mv Clemente, Gonçalo
dc.subject.por.fl_str_mv Lipofilia
Log P
RP-HPLC
Cálculo computacional
Lipophilicity
Log P
RP-HPLC
Computational calculation
topic Lipofilia
Log P
RP-HPLC
Cálculo computacional
Lipophilicity
Log P
RP-HPLC
Computational calculation
description Background – Lipophilicity is one of the physicochemical properties that most influence the ability of a molecule to move through biological compartments. The octanol/water partition coefficient (log P) can give us an estimation of the drug absorption in the organism. The existence of indirect methods for a quick calculation of log P may have great importance in the analysis of lists of compounds with potential pharmacological action, reducing them to those that are expected to have better biological behavior. Objectives – The purpose of this work is to present a RP-HPLC chromatographic method developed for the indirect determination of molecular lipophilicity and evaluate the performance of different computational programs that calculate this same parameter. Methods – For this study were selected 25 compounds, then was evaluated the log P of each one by RP-HPLC and finally, the obtained results were compared with those calculated by seven computational programs. Results – The tested RP-HPLC method proved to be advantageous in comparison with the conventional shake flask technique. The indirect calculation program that provides results closest to the experimentally obtained was ALOGPS© 2.1. Conclusions – The ideal choice for determining the lipophilicity of compounds whose log P is estimated to be between 0 and 6 is the experimental indirect method by RP-HPLC, especially regarding the quickness and simplicity of this procedure. For the computational methods, it was concluded that none of the programs, including ALOGPS© 2.1, proved to be effective in the evaluation of isomers. For this kind of compounds, it will be always necessary the shake flask or the RP-HPLC technique.
publishDate 2011
dc.date.none.fl_str_mv 2011-05-15
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.25758/set.344
https://doi.org/10.25758/set.344
url https://doi.org/10.25758/set.344
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://journals.ipl.pt/stecnologia/article/view/708
https://journals.ipl.pt/stecnologia/article/view/708/603
dc.rights.driver.fl_str_mv Direitos de Autor (c) 2022 Saúde & Tecnologia
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Direitos de Autor (c) 2022 Saúde & Tecnologia
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Escola Superior de Tecnologia da Saúde de Lisboa (Instituto Politécnico de Lisboa)
publisher.none.fl_str_mv Escola Superior de Tecnologia da Saúde de Lisboa (Instituto Politécnico de Lisboa)
dc.source.none.fl_str_mv Saúde e Tecnologia; No. 05 (2011): Maio 2011; 29-34
Saúde & Tecnologia; N.º 05 (2011): Maio 2011; 29-34
1646-9704
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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