Diverse monogenic subforms of human spermatogenic failure
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10362/147236 |
Resumo: | Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification. |
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Diverse monogenic subforms of human spermatogenic failureChemistry(all)Biochemistry, Genetics and Molecular Biology(all)GeneralPhysics and Astronomy(all)SDG 3 - Good Health and Well-beingNon-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification.Centre for Toxicogenomics and Human Health (ToxOmics)NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)RUNNagirnaja, LiinaLopes, Alexandra M.Charng, Wu LinMiller, BrianStakaitis, RytisGolubickaite, IevaStendahl, AlexandraLuan, TianpengchengFriedrich, CorinnaMahyari, EisaFadial, EloiseKasak, LauraVigh-Conrad, KatinkaOud, Manon S.Xavier, MiguelCheers, Samuel R.James, Emma R.Guo, JingtaoJenkins, Timothy G.Riera-Escamilla, AntoniBarros, AlbertoCarvalho, FilipaFernandes, SusanaGonçalves, JoãoGurnett, Christina A.Jørgensen, NielsJezek, DavorJungheim, Emily S.Kliesch, SabineMcLachlan, Robert I.Omurtag, Kenan R.Pilatz, AdrianSandlow, Jay I.Smith, JamesEisenberg, Michael L.Hotaling, James M.Jarvi, Keith A.Punab, MargusRajpert-De Meyts, EwaCarrell, Douglas T.Krausz, CsillaLaan, MarisO'Bryan, Moira K.Schlegel, Peter N.Tüttelmann, FrankVeltman, Joris A.Almstrup, KristianAston, Kenneth I.Conrad, Donald F.2023-01-09T22:16:32Z2022-12-262022-12-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/147236eng2041-1723PURE: 49544140https://doi.org/10.1038/s41467-022-35661-zinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:28:17Zoai:run.unl.pt:10362/147236Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:52:49.859395Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Diverse monogenic subforms of human spermatogenic failure |
title |
Diverse monogenic subforms of human spermatogenic failure |
spellingShingle |
Diverse monogenic subforms of human spermatogenic failure Nagirnaja, Liina Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) General Physics and Astronomy(all) SDG 3 - Good Health and Well-being |
title_short |
Diverse monogenic subforms of human spermatogenic failure |
title_full |
Diverse monogenic subforms of human spermatogenic failure |
title_fullStr |
Diverse monogenic subforms of human spermatogenic failure |
title_full_unstemmed |
Diverse monogenic subforms of human spermatogenic failure |
title_sort |
Diverse monogenic subforms of human spermatogenic failure |
author |
Nagirnaja, Liina |
author_facet |
Nagirnaja, Liina Lopes, Alexandra M. Charng, Wu Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O'Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
author_role |
author |
author2 |
Lopes, Alexandra M. Charng, Wu Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O'Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Centre for Toxicogenomics and Human Health (ToxOmics) NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM) RUN |
dc.contributor.author.fl_str_mv |
Nagirnaja, Liina Lopes, Alexandra M. Charng, Wu Lin Miller, Brian Stakaitis, Rytis Golubickaite, Ieva Stendahl, Alexandra Luan, Tianpengcheng Friedrich, Corinna Mahyari, Eisa Fadial, Eloise Kasak, Laura Vigh-Conrad, Katinka Oud, Manon S. Xavier, Miguel Cheers, Samuel R. James, Emma R. Guo, Jingtao Jenkins, Timothy G. Riera-Escamilla, Antoni Barros, Alberto Carvalho, Filipa Fernandes, Susana Gonçalves, João Gurnett, Christina A. Jørgensen, Niels Jezek, Davor Jungheim, Emily S. Kliesch, Sabine McLachlan, Robert I. Omurtag, Kenan R. Pilatz, Adrian Sandlow, Jay I. Smith, James Eisenberg, Michael L. Hotaling, James M. Jarvi, Keith A. Punab, Margus Rajpert-De Meyts, Ewa Carrell, Douglas T. Krausz, Csilla Laan, Maris O'Bryan, Moira K. Schlegel, Peter N. Tüttelmann, Frank Veltman, Joris A. Almstrup, Kristian Aston, Kenneth I. Conrad, Donald F. |
dc.subject.por.fl_str_mv |
Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) General Physics and Astronomy(all) SDG 3 - Good Health and Well-being |
topic |
Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) General Physics and Astronomy(all) SDG 3 - Good Health and Well-being |
description |
Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-12-26 2022-12-26T00:00:00Z 2023-01-09T22:16:32Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10362/147236 |
url |
http://hdl.handle.net/10362/147236 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
2041-1723 PURE: 49544140 https://doi.org/10.1038/s41467-022-35661-z |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
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application/pdf |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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