Diverse monogenic subforms of human spermatogenic failure

Detalhes bibliográficos
Autor(a) principal: Nagirnaja, Liina
Data de Publicação: 2022
Outros Autores: Lopes, Alexandra M., Charng, Wu Lin, Miller, Brian, Stakaitis, Rytis, Golubickaite, Ieva, Stendahl, Alexandra, Luan, Tianpengcheng, Friedrich, Corinna, Mahyari, Eisa, Fadial, Eloise, Kasak, Laura, Vigh-Conrad, Katinka, Oud, Manon S., Xavier, Miguel, Cheers, Samuel R., James, Emma R., Guo, Jingtao, Jenkins, Timothy G., Riera-Escamilla, Antoni, Barros, Alberto, Carvalho, Filipa, Fernandes, Susana, Gonçalves, João, Gurnett, Christina A., Jørgensen, Niels, Jezek, Davor, Jungheim, Emily S., Kliesch, Sabine, McLachlan, Robert I., Omurtag, Kenan R., Pilatz, Adrian, Sandlow, Jay I., Smith, James, Eisenberg, Michael L., Hotaling, James M., Jarvi, Keith A., Punab, Margus, Rajpert-De Meyts, Ewa, Carrell, Douglas T., Krausz, Csilla, Laan, Maris, O'Bryan, Moira K., Schlegel, Peter N., Tüttelmann, Frank, Veltman, Joris A., Almstrup, Kristian, Aston, Kenneth I., Conrad, Donald F.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/147236
Resumo: Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification.
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spelling Diverse monogenic subforms of human spermatogenic failureChemistry(all)Biochemistry, Genetics and Molecular Biology(all)GeneralPhysics and Astronomy(all)SDG 3 - Good Health and Well-beingNon-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification.Centre for Toxicogenomics and Human Health (ToxOmics)NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)RUNNagirnaja, LiinaLopes, Alexandra M.Charng, Wu LinMiller, BrianStakaitis, RytisGolubickaite, IevaStendahl, AlexandraLuan, TianpengchengFriedrich, CorinnaMahyari, EisaFadial, EloiseKasak, LauraVigh-Conrad, KatinkaOud, Manon S.Xavier, MiguelCheers, Samuel R.James, Emma R.Guo, JingtaoJenkins, Timothy G.Riera-Escamilla, AntoniBarros, AlbertoCarvalho, FilipaFernandes, SusanaGonçalves, JoãoGurnett, Christina A.Jørgensen, NielsJezek, DavorJungheim, Emily S.Kliesch, SabineMcLachlan, Robert I.Omurtag, Kenan R.Pilatz, AdrianSandlow, Jay I.Smith, JamesEisenberg, Michael L.Hotaling, James M.Jarvi, Keith A.Punab, MargusRajpert-De Meyts, EwaCarrell, Douglas T.Krausz, CsillaLaan, MarisO'Bryan, Moira K.Schlegel, Peter N.Tüttelmann, FrankVeltman, Joris A.Almstrup, KristianAston, Kenneth I.Conrad, Donald F.2023-01-09T22:16:32Z2022-12-262022-12-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/147236eng2041-1723PURE: 49544140https://doi.org/10.1038/s41467-022-35661-zinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:28:17Zoai:run.unl.pt:10362/147236Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:52:49.859395Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Diverse monogenic subforms of human spermatogenic failure
title Diverse monogenic subforms of human spermatogenic failure
spellingShingle Diverse monogenic subforms of human spermatogenic failure
Nagirnaja, Liina
Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
General
Physics and Astronomy(all)
SDG 3 - Good Health and Well-being
title_short Diverse monogenic subforms of human spermatogenic failure
title_full Diverse monogenic subforms of human spermatogenic failure
title_fullStr Diverse monogenic subforms of human spermatogenic failure
title_full_unstemmed Diverse monogenic subforms of human spermatogenic failure
title_sort Diverse monogenic subforms of human spermatogenic failure
author Nagirnaja, Liina
author_facet Nagirnaja, Liina
Lopes, Alexandra M.
Charng, Wu Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O'Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
author_role author
author2 Lopes, Alexandra M.
Charng, Wu Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O'Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
author2_role author
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author
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dc.contributor.none.fl_str_mv Centre for Toxicogenomics and Human Health (ToxOmics)
NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)
RUN
dc.contributor.author.fl_str_mv Nagirnaja, Liina
Lopes, Alexandra M.
Charng, Wu Lin
Miller, Brian
Stakaitis, Rytis
Golubickaite, Ieva
Stendahl, Alexandra
Luan, Tianpengcheng
Friedrich, Corinna
Mahyari, Eisa
Fadial, Eloise
Kasak, Laura
Vigh-Conrad, Katinka
Oud, Manon S.
Xavier, Miguel
Cheers, Samuel R.
James, Emma R.
Guo, Jingtao
Jenkins, Timothy G.
Riera-Escamilla, Antoni
Barros, Alberto
Carvalho, Filipa
Fernandes, Susana
Gonçalves, João
Gurnett, Christina A.
Jørgensen, Niels
Jezek, Davor
Jungheim, Emily S.
Kliesch, Sabine
McLachlan, Robert I.
Omurtag, Kenan R.
Pilatz, Adrian
Sandlow, Jay I.
Smith, James
Eisenberg, Michael L.
Hotaling, James M.
Jarvi, Keith A.
Punab, Margus
Rajpert-De Meyts, Ewa
Carrell, Douglas T.
Krausz, Csilla
Laan, Maris
O'Bryan, Moira K.
Schlegel, Peter N.
Tüttelmann, Frank
Veltman, Joris A.
Almstrup, Kristian
Aston, Kenneth I.
Conrad, Donald F.
dc.subject.por.fl_str_mv Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
General
Physics and Astronomy(all)
SDG 3 - Good Health and Well-being
topic Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
General
Physics and Astronomy(all)
SDG 3 - Good Health and Well-being
description Non-obstructive azoospermia (NOA) is the most severe form of male infertility and typically incurable. Defining the genetic basis of NOA has proven challenging, and the most advanced classification of NOA subforms is not based on genetics, but simple description of testis histology. In this study, we exome-sequenced over 1000 clinically diagnosed NOA cases and identified a plausible recessive Mendelian cause in 20%. We find further support for 21 genes in a 2-stage burden test with 2072 cases and 11,587 fertile controls. The disrupted genes are primarily on the autosomes, enriched for undescribed human "knockouts", and, for the most part, have yet to be linked to a Mendelian trait. Integration with single-cell RNA sequencing data shows that azoospermia genes can be grouped into molecular subforms with synchronized expression patterns, and analogs of these subforms exist in mice. This analysis framework identifies groups of genes with known roles in spermatogenesis but also reveals unrecognized subforms, such as a set of genes expressed across mitotic divisions of differentiating spermatogonia. Our findings highlight NOA as an understudied Mendelian disorder and provide a conceptual structure for organizing the complex genetics of male infertility, which may provide a rational basis for disease classification.
publishDate 2022
dc.date.none.fl_str_mv 2022-12-26
2022-12-26T00:00:00Z
2023-01-09T22:16:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10362/147236
url http://hdl.handle.net/10362/147236
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2041-1723
PURE: 49544140
https://doi.org/10.1038/s41467-022-35661-z
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
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instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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