iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification

Detalhes bibliográficos
Autor(a) principal: Paiva, JS
Data de Publicação: 2020
Outros Autores: Jorge, PAS, Ribeiro, RSR, Balmaña, M, Campos, D, Mereiter, S, Jin, C, Karlsson, NG, Sampaio, P, Reis, CA, Cunha, JPS
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/10216/141474
Resumo: With the advent of personalized medicine, there is a movement to develop “smaller” and “smarter” microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the “intelligent” Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.
id RCAP_e9b270c675691acb1ae960ad2b01ed61
oai_identifier_str oai:repositorio-aberto.up.pt:10216/141474
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type IdentificationWith the advent of personalized medicine, there is a movement to develop “smaller” and “smarter” microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the “intelligent” Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.Nature Publishing Group20202020-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/10216/141474eng2045-232210.1038/s41598-020-59661-5Paiva, JSJorge, PASRibeiro, RSRBalmaña, MCampos, DMereiter, SJin, CKarlsson, NGSampaio, PReis, CACunha, JPSinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-29T14:50:43Zoai:repositorio-aberto.up.pt:10216/141474Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T00:09:52.937823Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
title iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
spellingShingle iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
Paiva, JS
title_short iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
title_full iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
title_fullStr iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
title_full_unstemmed iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
title_sort iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification
author Paiva, JS
author_facet Paiva, JS
Jorge, PAS
Ribeiro, RSR
Balmaña, M
Campos, D
Mereiter, S
Jin, C
Karlsson, NG
Sampaio, P
Reis, CA
Cunha, JPS
author_role author
author2 Jorge, PAS
Ribeiro, RSR
Balmaña, M
Campos, D
Mereiter, S
Jin, C
Karlsson, NG
Sampaio, P
Reis, CA
Cunha, JPS
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Paiva, JS
Jorge, PAS
Ribeiro, RSR
Balmaña, M
Campos, D
Mereiter, S
Jin, C
Karlsson, NG
Sampaio, P
Reis, CA
Cunha, JPS
description With the advent of personalized medicine, there is a movement to develop “smaller” and “smarter” microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the “intelligent” Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.
publishDate 2020
dc.date.none.fl_str_mv 2020
2020-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/10216/141474
url https://hdl.handle.net/10216/141474
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2045-2322
10.1038/s41598-020-59661-5
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799136023101308928