The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

Detalhes bibliográficos
Autor(a) principal: Shao, Changwei
Data de Publicação: 2017
Outros Autores: Bao, Baolong, Xie, Zhiyuan, Chen, Xinye, Li, Bo, Jia, Xiaodong, Yao, Qiulin, Orti, Guillermo, Li, Wenhui, Li, Xihong, Hamre, Kristin, Xu, Juan, Wang, Lei, Chen, Fangyuan, Tian, Yongsheng, Schreiber, Alex M., Wang, Na, Wei, Fen, Zhang, Jilin, Dong, Zhongdian, Gao, Lei, Gai, Junwei, Sakamoto, Takashi, Mo, Sudong, Chen, Wenjun, Shi, Qiong, Li, Hui, Xiu, Yunji, Li, Yangzhen, Xu, Wenteng, Shi, Zhiyi, Zhang, Guojie, Power, Deborah M., Wang, Qingyin, Schartl, Manfred, Chen, Songlin
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/11355
Resumo: Flatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates.
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spelling The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetryHippoglossus L. larvaeThyroid-hormoneRetinoic acidMetamorphosisPigmentationReceptorEvolutionProductGenesFlatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates.National Natural Science Foundation of China [31130057, 31461163005, 31530078, 31472269, 31472262, 31472273]; State 863 High Technology R&D Project of China [2012AA092203, 2012AA10A408, 2012AA10A403-2]; Education and Research of Guangdong Province [2013B090800017]; Taishan Scholar Climb Project Fund of Shandong of China; Taishan Scholar Project Fund of Shandong of China for Young Scientists; Shanghai Universities First-class Disciplines Project of Fisheries; Program for Professor of Special Appointment (Eastern Scholar) at the Shanghai Institutions of Higher Learning; Shanghai Municipal Science, Special Project on the Integration of IndustryNature Publishing GroupSapientiaShao, ChangweiBao, BaolongXie, ZhiyuanChen, XinyeLi, BoJia, XiaodongYao, QiulinOrti, GuillermoLi, WenhuiLi, XihongHamre, KristinXu, JuanWang, LeiChen, FangyuanTian, YongshengSchreiber, Alex M.Wang, NaWei, FenZhang, JilinDong, ZhongdianGao, LeiGai, JunweiSakamoto, TakashiMo, SudongChen, WenjunShi, QiongLi, HuiXiu, YunjiLi, YangzhenXu, WentengShi, ZhiyiZhang, GuojiePower, Deborah M.Wang, QingyinSchartl, ManfredChen, Songlin2018-12-07T14:53:06Z2017-012017-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11355eng1061-403610.1038/ng.3732info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:09Zoai:sapientia.ualg.pt:10400.1/11355Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:02:52.514043Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
title The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
spellingShingle The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
Shao, Changwei
Hippoglossus L. larvae
Thyroid-hormone
Retinoic acid
Metamorphosis
Pigmentation
Receptor
Evolution
Product
Genes
title_short The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
title_full The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
title_fullStr The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
title_full_unstemmed The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
title_sort The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
author Shao, Changwei
author_facet Shao, Changwei
Bao, Baolong
Xie, Zhiyuan
Chen, Xinye
Li, Bo
Jia, Xiaodong
Yao, Qiulin
Orti, Guillermo
Li, Wenhui
Li, Xihong
Hamre, Kristin
Xu, Juan
Wang, Lei
Chen, Fangyuan
Tian, Yongsheng
Schreiber, Alex M.
Wang, Na
Wei, Fen
Zhang, Jilin
Dong, Zhongdian
Gao, Lei
Gai, Junwei
Sakamoto, Takashi
Mo, Sudong
Chen, Wenjun
Shi, Qiong
Li, Hui
Xiu, Yunji
Li, Yangzhen
Xu, Wenteng
Shi, Zhiyi
Zhang, Guojie
Power, Deborah M.
Wang, Qingyin
Schartl, Manfred
Chen, Songlin
author_role author
author2 Bao, Baolong
Xie, Zhiyuan
Chen, Xinye
Li, Bo
Jia, Xiaodong
Yao, Qiulin
Orti, Guillermo
Li, Wenhui
Li, Xihong
Hamre, Kristin
Xu, Juan
Wang, Lei
Chen, Fangyuan
Tian, Yongsheng
Schreiber, Alex M.
Wang, Na
Wei, Fen
Zhang, Jilin
Dong, Zhongdian
Gao, Lei
Gai, Junwei
Sakamoto, Takashi
Mo, Sudong
Chen, Wenjun
Shi, Qiong
Li, Hui
Xiu, Yunji
Li, Yangzhen
Xu, Wenteng
Shi, Zhiyi
Zhang, Guojie
Power, Deborah M.
Wang, Qingyin
Schartl, Manfred
Chen, Songlin
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Shao, Changwei
Bao, Baolong
Xie, Zhiyuan
Chen, Xinye
Li, Bo
Jia, Xiaodong
Yao, Qiulin
Orti, Guillermo
Li, Wenhui
Li, Xihong
Hamre, Kristin
Xu, Juan
Wang, Lei
Chen, Fangyuan
Tian, Yongsheng
Schreiber, Alex M.
Wang, Na
Wei, Fen
Zhang, Jilin
Dong, Zhongdian
Gao, Lei
Gai, Junwei
Sakamoto, Takashi
Mo, Sudong
Chen, Wenjun
Shi, Qiong
Li, Hui
Xiu, Yunji
Li, Yangzhen
Xu, Wenteng
Shi, Zhiyi
Zhang, Guojie
Power, Deborah M.
Wang, Qingyin
Schartl, Manfred
Chen, Songlin
dc.subject.por.fl_str_mv Hippoglossus L. larvae
Thyroid-hormone
Retinoic acid
Metamorphosis
Pigmentation
Receptor
Evolution
Product
Genes
topic Hippoglossus L. larvae
Thyroid-hormone
Retinoic acid
Metamorphosis
Pigmentation
Receptor
Evolution
Product
Genes
description Flatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates.
publishDate 2017
dc.date.none.fl_str_mv 2017-01
2017-01-01T00:00:00Z
2018-12-07T14:53:06Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/11355
url http://hdl.handle.net/10400.1/11355
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1061-4036
10.1038/ng.3732
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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