The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.1/11355 |
Resumo: | Flatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates. |
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The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetryHippoglossus L. larvaeThyroid-hormoneRetinoic acidMetamorphosisPigmentationReceptorEvolutionProductGenesFlatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates.National Natural Science Foundation of China [31130057, 31461163005, 31530078, 31472269, 31472262, 31472273]; State 863 High Technology R&D Project of China [2012AA092203, 2012AA10A408, 2012AA10A403-2]; Education and Research of Guangdong Province [2013B090800017]; Taishan Scholar Climb Project Fund of Shandong of China; Taishan Scholar Project Fund of Shandong of China for Young Scientists; Shanghai Universities First-class Disciplines Project of Fisheries; Program for Professor of Special Appointment (Eastern Scholar) at the Shanghai Institutions of Higher Learning; Shanghai Municipal Science, Special Project on the Integration of IndustryNature Publishing GroupSapientiaShao, ChangweiBao, BaolongXie, ZhiyuanChen, XinyeLi, BoJia, XiaodongYao, QiulinOrti, GuillermoLi, WenhuiLi, XihongHamre, KristinXu, JuanWang, LeiChen, FangyuanTian, YongshengSchreiber, Alex M.Wang, NaWei, FenZhang, JilinDong, ZhongdianGao, LeiGai, JunweiSakamoto, TakashiMo, SudongChen, WenjunShi, QiongLi, HuiXiu, YunjiLi, YangzhenXu, WentengShi, ZhiyiZhang, GuojiePower, Deborah M.Wang, QingyinSchartl, ManfredChen, Songlin2018-12-07T14:53:06Z2017-012017-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11355eng1061-403610.1038/ng.3732info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:09Zoai:sapientia.ualg.pt:10400.1/11355Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:02:52.514043Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
title |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
spellingShingle |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry Shao, Changwei Hippoglossus L. larvae Thyroid-hormone Retinoic acid Metamorphosis Pigmentation Receptor Evolution Product Genes |
title_short |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
title_full |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
title_fullStr |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
title_full_unstemmed |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
title_sort |
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry |
author |
Shao, Changwei |
author_facet |
Shao, Changwei Bao, Baolong Xie, Zhiyuan Chen, Xinye Li, Bo Jia, Xiaodong Yao, Qiulin Orti, Guillermo Li, Wenhui Li, Xihong Hamre, Kristin Xu, Juan Wang, Lei Chen, Fangyuan Tian, Yongsheng Schreiber, Alex M. Wang, Na Wei, Fen Zhang, Jilin Dong, Zhongdian Gao, Lei Gai, Junwei Sakamoto, Takashi Mo, Sudong Chen, Wenjun Shi, Qiong Li, Hui Xiu, Yunji Li, Yangzhen Xu, Wenteng Shi, Zhiyi Zhang, Guojie Power, Deborah M. Wang, Qingyin Schartl, Manfred Chen, Songlin |
author_role |
author |
author2 |
Bao, Baolong Xie, Zhiyuan Chen, Xinye Li, Bo Jia, Xiaodong Yao, Qiulin Orti, Guillermo Li, Wenhui Li, Xihong Hamre, Kristin Xu, Juan Wang, Lei Chen, Fangyuan Tian, Yongsheng Schreiber, Alex M. Wang, Na Wei, Fen Zhang, Jilin Dong, Zhongdian Gao, Lei Gai, Junwei Sakamoto, Takashi Mo, Sudong Chen, Wenjun Shi, Qiong Li, Hui Xiu, Yunji Li, Yangzhen Xu, Wenteng Shi, Zhiyi Zhang, Guojie Power, Deborah M. Wang, Qingyin Schartl, Manfred Chen, Songlin |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Sapientia |
dc.contributor.author.fl_str_mv |
Shao, Changwei Bao, Baolong Xie, Zhiyuan Chen, Xinye Li, Bo Jia, Xiaodong Yao, Qiulin Orti, Guillermo Li, Wenhui Li, Xihong Hamre, Kristin Xu, Juan Wang, Lei Chen, Fangyuan Tian, Yongsheng Schreiber, Alex M. Wang, Na Wei, Fen Zhang, Jilin Dong, Zhongdian Gao, Lei Gai, Junwei Sakamoto, Takashi Mo, Sudong Chen, Wenjun Shi, Qiong Li, Hui Xiu, Yunji Li, Yangzhen Xu, Wenteng Shi, Zhiyi Zhang, Guojie Power, Deborah M. Wang, Qingyin Schartl, Manfred Chen, Songlin |
dc.subject.por.fl_str_mv |
Hippoglossus L. larvae Thyroid-hormone Retinoic acid Metamorphosis Pigmentation Receptor Evolution Product Genes |
topic |
Hippoglossus L. larvae Thyroid-hormone Retinoic acid Metamorphosis Pigmentation Receptor Evolution Product Genes |
description |
Flatfish have the most extreme asymmetric body morphology of vertebrates. During metamorphosis, one eye migrates to the contralateral side of the skull, and this migration is accompanied by extensive craniofacial transformations and simultaneous development of lopsided body pigmentation(1-5). The evolution of this developmental and physiological innovation remains enigmatic. Comparative genomics of two flatfish and transcriptomic analyses during metamorphosis point to a role for thyroid hormone and retinoic acid signaling, as well as phototransduction pathways. We demonstrate that retinoic acid is critical in establishing asymmetric pigmentation and, via cross-talk with thyroid hormones, in modulating eye migration. The unexpected expression of the visual opsins from the phototransduction pathway in the skin translates illumination differences and generates retinoic acid gradients that underlie the generation of asymmetry. Identifying the genetic underpinning of this unique developmental process answers long-standing questions about the evolutionary origin of asymmetry, but it also provides insight into the mechanisms that control body shape in vertebrates. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-01 2017-01-01T00:00:00Z 2018-12-07T14:53:06Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.1/11355 |
url |
http://hdl.handle.net/10400.1/11355 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1061-4036 10.1038/ng.3732 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799133262593916928 |