Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets

Detalhes bibliográficos
Autor(a) principal: Forrestal, Francesca C.
Data de Publicação: 2019
Outros Autores: Schirripa, Michael, Goodyear, C. Phillip, Arrizabalaga, Haritz, Babcock, Elizabeth A., Coelho, Rui, Ingram, Walter, Lauretta, Matthew, Ortiz, Mauricio, Sharma, Rishi, Walter, John
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/14871
Resumo: Environmental variability changes the distribution, migratory patterns, and susceptibility to various fishing gears for highly migratory marine fish. These changes become especially problematic when they affect the indices of abundance (such as those based on catch-per-unit-effort: CPUE) used to assess the status of fish stocks. The use of simulated CPUE data sets with known values of underlying population trends has been recommended by ICCAT (International Commission for the Conservation of Atlantic Tunas) to test the robustness of CPUE standardization methods. A longline CPUE data simulator was developed to meet this objective and simulate fisheries data from a population with distinct habitat preferences. The simulation was used to test several statistical hypotheses regarding best practices for index standardization aimed at accurate estimation of population trends. Effort data from the US pelagic longline fleet was paired with a volume-weighted habitat suitability model for blue marlin (Makaira nigricans) to derive a simulated time series of blue marlin catch and effort from 1986 to 2015 with four different underlying population trends. The simulated CPUE data were provided to stock assessment scientists to determine if the underlying population abundance trend could accurately be detected with different methods of CPUE standardization that did or did not incorporate environmental data. While the analysts’ approach to the data and the modeling structure differed, the underlying population trends were captured, some more successfully than others. In general, the inclusion of environmental and habitat variables aided the standardization process. However, differences in approaches highlight the importance of how explanatory variables are categorized and the criteria for including those variables. A set of lessons learned from this study was developed as recommendations for best practices for CPUE standardization.
id RCAP_faa45ceaf7108b36ebabf16ae68d1a16
oai_identifier_str oai:sapientia.ualg.pt:10400.1/14871
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasetsCatch/effortLonglineStatistical modelsSimulationStock assessmentEnvironmental effectsEnvironmental variability changes the distribution, migratory patterns, and susceptibility to various fishing gears for highly migratory marine fish. These changes become especially problematic when they affect the indices of abundance (such as those based on catch-per-unit-effort: CPUE) used to assess the status of fish stocks. The use of simulated CPUE data sets with known values of underlying population trends has been recommended by ICCAT (International Commission for the Conservation of Atlantic Tunas) to test the robustness of CPUE standardization methods. A longline CPUE data simulator was developed to meet this objective and simulate fisheries data from a population with distinct habitat preferences. The simulation was used to test several statistical hypotheses regarding best practices for index standardization aimed at accurate estimation of population trends. Effort data from the US pelagic longline fleet was paired with a volume-weighted habitat suitability model for blue marlin (Makaira nigricans) to derive a simulated time series of blue marlin catch and effort from 1986 to 2015 with four different underlying population trends. The simulated CPUE data were provided to stock assessment scientists to determine if the underlying population abundance trend could accurately be detected with different methods of CPUE standardization that did or did not incorporate environmental data. While the analysts’ approach to the data and the modeling structure differed, the underlying population trends were captured, some more successfully than others. In general, the inclusion of environmental and habitat variables aided the standardization process. However, differences in approaches highlight the importance of how explanatory variables are categorized and the criteria for including those variables. A set of lessons learned from this study was developed as recommendations for best practices for CPUE standardization.FCT IF/00253/2014ElsevierSapientiaForrestal, Francesca C.Schirripa, MichaelGoodyear, C. PhillipArrizabalaga, HaritzBabcock, Elizabeth A.Coelho, RuiIngram, WalterLauretta, MatthewOrtiz, MauricioSharma, RishiWalter, John2021-02-01T01:30:16Z20192019-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/14871eng0165-783610.1016/j.fishres.2018.09.025info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:27:13Zoai:sapientia.ualg.pt:10400.1/14871Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:05:49.246655Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
title Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
spellingShingle Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
Forrestal, Francesca C.
Catch/effort
Longline
Statistical models
Simulation
Stock assessment
Environmental effects
title_short Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
title_full Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
title_fullStr Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
title_full_unstemmed Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
title_sort Testing robustness of CPUE standardization and inclusion of environmental variables with simulated longline catch datasets
author Forrestal, Francesca C.
author_facet Forrestal, Francesca C.
Schirripa, Michael
Goodyear, C. Phillip
Arrizabalaga, Haritz
Babcock, Elizabeth A.
Coelho, Rui
Ingram, Walter
Lauretta, Matthew
Ortiz, Mauricio
Sharma, Rishi
Walter, John
author_role author
author2 Schirripa, Michael
Goodyear, C. Phillip
Arrizabalaga, Haritz
Babcock, Elizabeth A.
Coelho, Rui
Ingram, Walter
Lauretta, Matthew
Ortiz, Mauricio
Sharma, Rishi
Walter, John
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Forrestal, Francesca C.
Schirripa, Michael
Goodyear, C. Phillip
Arrizabalaga, Haritz
Babcock, Elizabeth A.
Coelho, Rui
Ingram, Walter
Lauretta, Matthew
Ortiz, Mauricio
Sharma, Rishi
Walter, John
dc.subject.por.fl_str_mv Catch/effort
Longline
Statistical models
Simulation
Stock assessment
Environmental effects
topic Catch/effort
Longline
Statistical models
Simulation
Stock assessment
Environmental effects
description Environmental variability changes the distribution, migratory patterns, and susceptibility to various fishing gears for highly migratory marine fish. These changes become especially problematic when they affect the indices of abundance (such as those based on catch-per-unit-effort: CPUE) used to assess the status of fish stocks. The use of simulated CPUE data sets with known values of underlying population trends has been recommended by ICCAT (International Commission for the Conservation of Atlantic Tunas) to test the robustness of CPUE standardization methods. A longline CPUE data simulator was developed to meet this objective and simulate fisheries data from a population with distinct habitat preferences. The simulation was used to test several statistical hypotheses regarding best practices for index standardization aimed at accurate estimation of population trends. Effort data from the US pelagic longline fleet was paired with a volume-weighted habitat suitability model for blue marlin (Makaira nigricans) to derive a simulated time series of blue marlin catch and effort from 1986 to 2015 with four different underlying population trends. The simulated CPUE data were provided to stock assessment scientists to determine if the underlying population abundance trend could accurately be detected with different methods of CPUE standardization that did or did not incorporate environmental data. While the analysts’ approach to the data and the modeling structure differed, the underlying population trends were captured, some more successfully than others. In general, the inclusion of environmental and habitat variables aided the standardization process. However, differences in approaches highlight the importance of how explanatory variables are categorized and the criteria for including those variables. A set of lessons learned from this study was developed as recommendations for best practices for CPUE standardization.
publishDate 2019
dc.date.none.fl_str_mv 2019
2019-01-01T00:00:00Z
2021-02-01T01:30:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/14871
url http://hdl.handle.net/10400.1/14871
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0165-7836
10.1016/j.fishres.2018.09.025
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799133298751963136