A user-friendly software to easily count Anopheles egg batches
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.1/11795 |
Resumo: | Background: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/. |
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A user-friendly software to easily count Anopheles egg batchesReproductive fitnessStephensi mosquitosMolecular-formsGambiae dipteraMalaria vectorFecundityInfectionArabiensisCulicidaeSurvivalBackground: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/.BMCSapientiaMollahosseini, AliRossignol, MariePennetier, CedricCohuet, AnnaDos Anjos, AntónioChandre, FabriceShahbazkia, Hamid Reza2018-12-07T14:57:59Z2012-062012-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11795eng1756-330510.1186/1756-3305-5-122info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:39Zoai:sapientia.ualg.pt:10400.1/11795Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:03:15.006923Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
A user-friendly software to easily count Anopheles egg batches |
title |
A user-friendly software to easily count Anopheles egg batches |
spellingShingle |
A user-friendly software to easily count Anopheles egg batches Mollahosseini, Ali Reproductive fitness Stephensi mosquitos Molecular-forms Gambiae diptera Malaria vector Fecundity Infection Arabiensis Culicidae Survival |
title_short |
A user-friendly software to easily count Anopheles egg batches |
title_full |
A user-friendly software to easily count Anopheles egg batches |
title_fullStr |
A user-friendly software to easily count Anopheles egg batches |
title_full_unstemmed |
A user-friendly software to easily count Anopheles egg batches |
title_sort |
A user-friendly software to easily count Anopheles egg batches |
author |
Mollahosseini, Ali |
author_facet |
Mollahosseini, Ali Rossignol, Marie Pennetier, Cedric Cohuet, Anna Dos Anjos, António Chandre, Fabrice Shahbazkia, Hamid Reza |
author_role |
author |
author2 |
Rossignol, Marie Pennetier, Cedric Cohuet, Anna Dos Anjos, António Chandre, Fabrice Shahbazkia, Hamid Reza |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Sapientia |
dc.contributor.author.fl_str_mv |
Mollahosseini, Ali Rossignol, Marie Pennetier, Cedric Cohuet, Anna Dos Anjos, António Chandre, Fabrice Shahbazkia, Hamid Reza |
dc.subject.por.fl_str_mv |
Reproductive fitness Stephensi mosquitos Molecular-forms Gambiae diptera Malaria vector Fecundity Infection Arabiensis Culicidae Survival |
topic |
Reproductive fitness Stephensi mosquitos Molecular-forms Gambiae diptera Malaria vector Fecundity Infection Arabiensis Culicidae Survival |
description |
Background: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-06 2012-06-01T00:00:00Z 2018-12-07T14:57:59Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.1/11795 |
url |
http://hdl.handle.net/10400.1/11795 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1756-3305 10.1186/1756-3305-5-122 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
BMC |
publisher.none.fl_str_mv |
BMC |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799133267057704960 |