A user-friendly software to easily count Anopheles egg batches

Detalhes bibliográficos
Autor(a) principal: Mollahosseini, Ali
Data de Publicação: 2012
Outros Autores: Rossignol, Marie, Pennetier, Cedric, Cohuet, Anna, Dos Anjos, António, Chandre, Fabrice, Shahbazkia, Hamid Reza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/11795
Resumo: Background: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/.
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spelling A user-friendly software to easily count Anopheles egg batchesReproductive fitnessStephensi mosquitosMolecular-formsGambiae dipteraMalaria vectorFecundityInfectionArabiensisCulicidaeSurvivalBackground: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/.BMCSapientiaMollahosseini, AliRossignol, MariePennetier, CedricCohuet, AnnaDos Anjos, AntónioChandre, FabriceShahbazkia, Hamid Reza2018-12-07T14:57:59Z2012-062012-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11795eng1756-330510.1186/1756-3305-5-122info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:39Zoai:sapientia.ualg.pt:10400.1/11795Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:03:15.006923Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A user-friendly software to easily count Anopheles egg batches
title A user-friendly software to easily count Anopheles egg batches
spellingShingle A user-friendly software to easily count Anopheles egg batches
Mollahosseini, Ali
Reproductive fitness
Stephensi mosquitos
Molecular-forms
Gambiae diptera
Malaria vector
Fecundity
Infection
Arabiensis
Culicidae
Survival
title_short A user-friendly software to easily count Anopheles egg batches
title_full A user-friendly software to easily count Anopheles egg batches
title_fullStr A user-friendly software to easily count Anopheles egg batches
title_full_unstemmed A user-friendly software to easily count Anopheles egg batches
title_sort A user-friendly software to easily count Anopheles egg batches
author Mollahosseini, Ali
author_facet Mollahosseini, Ali
Rossignol, Marie
Pennetier, Cedric
Cohuet, Anna
Dos Anjos, António
Chandre, Fabrice
Shahbazkia, Hamid Reza
author_role author
author2 Rossignol, Marie
Pennetier, Cedric
Cohuet, Anna
Dos Anjos, António
Chandre, Fabrice
Shahbazkia, Hamid Reza
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Mollahosseini, Ali
Rossignol, Marie
Pennetier, Cedric
Cohuet, Anna
Dos Anjos, António
Chandre, Fabrice
Shahbazkia, Hamid Reza
dc.subject.por.fl_str_mv Reproductive fitness
Stephensi mosquitos
Molecular-forms
Gambiae diptera
Malaria vector
Fecundity
Infection
Arabiensis
Culicidae
Survival
topic Reproductive fitness
Stephensi mosquitos
Molecular-forms
Gambiae diptera
Malaria vector
Fecundity
Infection
Arabiensis
Culicidae
Survival
description Background: Studies on malaria vector ecology and development/evaluation of vector control strategies often require measures of mosquito life history traits. Assessing the fecundity of malaria vectors can be carried out by counting eggs laid by Anopheles females. However, manually counting the eggs is time consuming, tedious, and error prone. Methods: In this paper we present a newly developed software for high precision automatic egg counting. The software written in the Java programming language proposes a user-friendly interface and a complete online manual. It allows the inspection of results by the operator and includes proper tools for manual corrections. The user can in fact correct any details on the acquired results by a mouse click. Time saving is significant and errors due to loss of concentration are avoided. Results: The software was tested over 16 randomly chosen images from 2 different experiments. The results show that the proposed automatic method produces results that are close to the ground truth. Conclusions: The proposed approaches demonstrated a very high level of robustness. The adoption of the proposed software package will save many hours of labor to the bench scientist. The software needs no particular configuration and is freely available for download on: http://w3.ualg.pt/(similar to)hshah/eggcounter/.
publishDate 2012
dc.date.none.fl_str_mv 2012-06
2012-06-01T00:00:00Z
2018-12-07T14:57:59Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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url http://hdl.handle.net/10400.1/11795
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1756-3305
10.1186/1756-3305-5-122
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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