Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
Autor(a) principal: | |
---|---|
Data de Publicação: | 2013 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Revista Brasileira de Engenharia Biomédica (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007 |
Resumo: | INTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection. |
id |
SBEB-2_1c3e3a89bd5ce395b975d6f219a9a9d5 |
---|---|
oai_identifier_str |
oai:scielo:S1517-31512013000400007 |
network_acronym_str |
SBEB-2 |
network_name_str |
Revista Brasileira de Engenharia Biomédica (Online) |
repository_id_str |
|
spelling |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filtersSegmentationMammographyMathematical morphologyOtsu's methodMicrocalcificationsBreast cancerINTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection.SBEB - Sociedade Brasileira de Engenharia Biomédica2013-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007Revista Brasileira de Engenharia Biomédica v.29 n.4 2013reponame:Revista Brasileira de Engenharia Biomédica (Online)instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)instacron:SBEB10.4322/rbeb.2013.037info:eu-repo/semantics/openAccessDuarte,Marcelo de AlmeidaAlvarenga,André VictorAzevedo,Carolina MariaCalas,Maria Julia GregórioInfantosi,Antonio Fernando CatelliPereira,Wagner Coelho de Albuquerqueeng2015-05-19T00:00:00Zoai:scielo:S1517-31512013000400007Revistahttp://www.scielo.br/rbebONGhttps://old.scielo.br/oai/scielo-oai.php||rbeb@rbeb.org.br1984-77421517-3151opendoar:2015-05-19T00:00Revista Brasileira de Engenharia Biomédica (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)false |
dc.title.none.fl_str_mv |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
title |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
spellingShingle |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters Duarte,Marcelo de Almeida Segmentation Mammography Mathematical morphology Otsu's method Microcalcifications Breast cancer |
title_short |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
title_full |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
title_fullStr |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
title_full_unstemmed |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
title_sort |
Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters |
author |
Duarte,Marcelo de Almeida |
author_facet |
Duarte,Marcelo de Almeida Alvarenga,André Victor Azevedo,Carolina Maria Calas,Maria Julia Gregório Infantosi,Antonio Fernando Catelli Pereira,Wagner Coelho de Albuquerque |
author_role |
author |
author2 |
Alvarenga,André Victor Azevedo,Carolina Maria Calas,Maria Julia Gregório Infantosi,Antonio Fernando Catelli Pereira,Wagner Coelho de Albuquerque |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
Duarte,Marcelo de Almeida Alvarenga,André Victor Azevedo,Carolina Maria Calas,Maria Julia Gregório Infantosi,Antonio Fernando Catelli Pereira,Wagner Coelho de Albuquerque |
dc.subject.por.fl_str_mv |
Segmentation Mammography Mathematical morphology Otsu's method Microcalcifications Breast cancer |
topic |
Segmentation Mammography Mathematical morphology Otsu's method Microcalcifications Breast cancer |
description |
INTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-12-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.4322/rbeb.2013.037 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
SBEB - Sociedade Brasileira de Engenharia Biomédica |
publisher.none.fl_str_mv |
SBEB - Sociedade Brasileira de Engenharia Biomédica |
dc.source.none.fl_str_mv |
Revista Brasileira de Engenharia Biomédica v.29 n.4 2013 reponame:Revista Brasileira de Engenharia Biomédica (Online) instname:Sociedade Brasileira de Engenharia Biomédica (SBEB) instacron:SBEB |
instname_str |
Sociedade Brasileira de Engenharia Biomédica (SBEB) |
instacron_str |
SBEB |
institution |
SBEB |
reponame_str |
Revista Brasileira de Engenharia Biomédica (Online) |
collection |
Revista Brasileira de Engenharia Biomédica (Online) |
repository.name.fl_str_mv |
Revista Brasileira de Engenharia Biomédica (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB) |
repository.mail.fl_str_mv |
||rbeb@rbeb.org.br |
_version_ |
1754820915078627328 |