The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae

Detalhes bibliográficos
Autor(a) principal: Xu,Lingfeng
Data de Publicação: 2021
Outros Autores: Zhou,Nong, Zhao,Shunxin, Li,Jingling, Pei,Xiaoying, Yu,Jie, Guo,Dongqin
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572021000400301
Resumo: Abstract Cotinus coggygria Scop. (Anacardiaceae) is an important ornamental tree with beautiful characteristics that is grown in China. In this study, the complete plastid genome of C. coggygria was sequenced and assembled. This genome was 158,843 bp in size and presented a typical tetrad structure, consisting of a large single-copy region (87,121 bp), a pair of inverted repeat regions (26,829 bp), and a small single-copy region (18,064 bp). A total of 134 genes were annotated, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. We observed a deletion that caused the loss of the rpl32 gene, and a small expansion of IR regions resulted in the trnH gene accessing IR regions; two copies were obtained. Phylogenetic analysis showed that C. coggygria was most closely related to Pistacia, with 100% bootstrap support within Anacardiaceae. In this study, we report the plastid genome of Cotinus species for the first time, which provides insight into the evolution of the plastid genome in Anacardiaceae and promotes the understanding of Cotinus plants.
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spelling The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the AnacardiaceaePlastid genomegenesgenetic resourcestructure variationphylogenetic analysisAbstract Cotinus coggygria Scop. (Anacardiaceae) is an important ornamental tree with beautiful characteristics that is grown in China. In this study, the complete plastid genome of C. coggygria was sequenced and assembled. This genome was 158,843 bp in size and presented a typical tetrad structure, consisting of a large single-copy region (87,121 bp), a pair of inverted repeat regions (26,829 bp), and a small single-copy region (18,064 bp). A total of 134 genes were annotated, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. We observed a deletion that caused the loss of the rpl32 gene, and a small expansion of IR regions resulted in the trnH gene accessing IR regions; two copies were obtained. Phylogenetic analysis showed that C. coggygria was most closely related to Pistacia, with 100% bootstrap support within Anacardiaceae. In this study, we report the plastid genome of Cotinus species for the first time, which provides insight into the evolution of the plastid genome in Anacardiaceae and promotes the understanding of Cotinus plants.Sociedade Brasileira de Genética2021-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572021000400301Genetics and Molecular Biology v.44 n.3 2021reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/1678-4685-gmb-2021-0006info:eu-repo/semantics/openAccessXu,LingfengZhou,NongZhao,ShunxinLi,JinglingPei,XiaoyingYu,JieGuo,Dongqineng2021-07-29T00:00:00Zoai:scielo:S1415-47572021000400301Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2021-07-29T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
title The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
spellingShingle The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
Xu,Lingfeng
Plastid genome
genes
genetic resource
structure variation
phylogenetic analysis
title_short The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
title_full The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
title_fullStr The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
title_full_unstemmed The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
title_sort The complete plastid genome of Cotinus coggygria and phylogenetic analysis of the Anacardiaceae
author Xu,Lingfeng
author_facet Xu,Lingfeng
Zhou,Nong
Zhao,Shunxin
Li,Jingling
Pei,Xiaoying
Yu,Jie
Guo,Dongqin
author_role author
author2 Zhou,Nong
Zhao,Shunxin
Li,Jingling
Pei,Xiaoying
Yu,Jie
Guo,Dongqin
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Xu,Lingfeng
Zhou,Nong
Zhao,Shunxin
Li,Jingling
Pei,Xiaoying
Yu,Jie
Guo,Dongqin
dc.subject.por.fl_str_mv Plastid genome
genes
genetic resource
structure variation
phylogenetic analysis
topic Plastid genome
genes
genetic resource
structure variation
phylogenetic analysis
description Abstract Cotinus coggygria Scop. (Anacardiaceae) is an important ornamental tree with beautiful characteristics that is grown in China. In this study, the complete plastid genome of C. coggygria was sequenced and assembled. This genome was 158,843 bp in size and presented a typical tetrad structure, consisting of a large single-copy region (87,121 bp), a pair of inverted repeat regions (26,829 bp), and a small single-copy region (18,064 bp). A total of 134 genes were annotated, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. We observed a deletion that caused the loss of the rpl32 gene, and a small expansion of IR regions resulted in the trnH gene accessing IR regions; two copies were obtained. Phylogenetic analysis showed that C. coggygria was most closely related to Pistacia, with 100% bootstrap support within Anacardiaceae. In this study, we report the plastid genome of Cotinus species for the first time, which provides insight into the evolution of the plastid genome in Anacardiaceae and promotes the understanding of Cotinus plants.
publishDate 2021
dc.date.none.fl_str_mv 2021-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572021000400301
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572021000400301
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-4685-gmb-2021-0006
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.44 n.3 2021
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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