Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA

Detalhes bibliográficos
Autor(a) principal: Rocha,Bruno Aragão
Data de Publicação: 2008
Outros Autores: Del Negro,Gilda Maria Barbaro, Yamamoto,Lidia, Souza,Mariana Vitule Brito de, Precioso,Alexander Roberto, Okay,Thelma Suely
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista da Sociedade Brasileira de Medicina Tropical
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0037-86822008000100001
Resumo: Thirty-four Candida isolates were analyzed by random amplified polymorphic DNA using the primer OPG-10:24 Candida albicans; 4 Candida tropicalis; 2 Candida parapsilosis; 2 Candida dubliniensis; 1 Candida glabrata and 1 Candida krusei. The UPGMA-Pearson correlation coefficient was used to calculate the genetic distance between the different Candida groupings. Samples were classified as identical (correlation of 100%); highly related samples (90%); moderately related samples (80%) and unrelated samples (< 70%). The results showed that the RAPD proposed was capable of classifying the isolates coherently (such that same species were in the same dendrogram), except for two isolates of Candida parapsilosis and the positive control (Netherlands, 1973), probably because they are now recognized as three different species. Concerning the only fluconazole-resistant Candida tropicalis isolate with a genotype that was different to the others, the data were insufficient to affirm that the only difference was the sensitivity to fluconazole. We concluded that the Random Amplified Polymorphic DNA proposed might be used to confirm Candida species identified by microbiological methods.
id SBMT-1_add29024239b0e077f404429544d65f0
oai_identifier_str oai:scielo:S0037-86822008000100001
network_acronym_str SBMT-1
network_name_str Revista da Sociedade Brasileira de Medicina Tropical
repository_id_str
spelling Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNARAPDCandidiasisCandida sppPolymorphismMolecular typingThirty-four Candida isolates were analyzed by random amplified polymorphic DNA using the primer OPG-10:24 Candida albicans; 4 Candida tropicalis; 2 Candida parapsilosis; 2 Candida dubliniensis; 1 Candida glabrata and 1 Candida krusei. The UPGMA-Pearson correlation coefficient was used to calculate the genetic distance between the different Candida groupings. Samples were classified as identical (correlation of 100%); highly related samples (90%); moderately related samples (80%) and unrelated samples (< 70%). The results showed that the RAPD proposed was capable of classifying the isolates coherently (such that same species were in the same dendrogram), except for two isolates of Candida parapsilosis and the positive control (Netherlands, 1973), probably because they are now recognized as three different species. Concerning the only fluconazole-resistant Candida tropicalis isolate with a genotype that was different to the others, the data were insufficient to affirm that the only difference was the sensitivity to fluconazole. We concluded that the Random Amplified Polymorphic DNA proposed might be used to confirm Candida species identified by microbiological methods.Sociedade Brasileira de Medicina Tropical - SBMT2008-02-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0037-86822008000100001Revista da Sociedade Brasileira de Medicina Tropical v.41 n.1 2008reponame:Revista da Sociedade Brasileira de Medicina Tropicalinstname:Sociedade Brasileira de Medicina Tropical (SBMT)instacron:SBMT10.1590/S0037-86822008000100001info:eu-repo/semantics/openAccessRocha,Bruno AragãoDel Negro,Gilda Maria BarbaroYamamoto,LidiaSouza,Mariana Vitule Brito dePrecioso,Alexander RobertoOkay,Thelma Suelyeng2008-03-12T00:00:00Zoai:scielo:S0037-86822008000100001Revistahttps://www.sbmt.org.br/portal/revista/ONGhttps://old.scielo.br/oai/scielo-oai.php||dalmo@rsbmt.uftm.edu.br|| rsbmt@rsbmt.uftm.edu.br1678-98490037-8682opendoar:2008-03-12T00:00Revista da Sociedade Brasileira de Medicina Tropical - Sociedade Brasileira de Medicina Tropical (SBMT)false
dc.title.none.fl_str_mv Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
title Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
spellingShingle Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
Rocha,Bruno Aragão
RAPD
Candidiasis
Candida spp
Polymorphism
Molecular typing
title_short Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
title_full Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
title_fullStr Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
title_full_unstemmed Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
title_sort Identification and differentiation of Candida species from pediatric patients by random amplified polymorphic DNA
author Rocha,Bruno Aragão
author_facet Rocha,Bruno Aragão
Del Negro,Gilda Maria Barbaro
Yamamoto,Lidia
Souza,Mariana Vitule Brito de
Precioso,Alexander Roberto
Okay,Thelma Suely
author_role author
author2 Del Negro,Gilda Maria Barbaro
Yamamoto,Lidia
Souza,Mariana Vitule Brito de
Precioso,Alexander Roberto
Okay,Thelma Suely
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Rocha,Bruno Aragão
Del Negro,Gilda Maria Barbaro
Yamamoto,Lidia
Souza,Mariana Vitule Brito de
Precioso,Alexander Roberto
Okay,Thelma Suely
dc.subject.por.fl_str_mv RAPD
Candidiasis
Candida spp
Polymorphism
Molecular typing
topic RAPD
Candidiasis
Candida spp
Polymorphism
Molecular typing
description Thirty-four Candida isolates were analyzed by random amplified polymorphic DNA using the primer OPG-10:24 Candida albicans; 4 Candida tropicalis; 2 Candida parapsilosis; 2 Candida dubliniensis; 1 Candida glabrata and 1 Candida krusei. The UPGMA-Pearson correlation coefficient was used to calculate the genetic distance between the different Candida groupings. Samples were classified as identical (correlation of 100%); highly related samples (90%); moderately related samples (80%) and unrelated samples (< 70%). The results showed that the RAPD proposed was capable of classifying the isolates coherently (such that same species were in the same dendrogram), except for two isolates of Candida parapsilosis and the positive control (Netherlands, 1973), probably because they are now recognized as three different species. Concerning the only fluconazole-resistant Candida tropicalis isolate with a genotype that was different to the others, the data were insufficient to affirm that the only difference was the sensitivity to fluconazole. We concluded that the Random Amplified Polymorphic DNA proposed might be used to confirm Candida species identified by microbiological methods.
publishDate 2008
dc.date.none.fl_str_mv 2008-02-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0037-86822008000100001
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0037-86822008000100001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0037-86822008000100001
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Medicina Tropical - SBMT
publisher.none.fl_str_mv Sociedade Brasileira de Medicina Tropical - SBMT
dc.source.none.fl_str_mv Revista da Sociedade Brasileira de Medicina Tropical v.41 n.1 2008
reponame:Revista da Sociedade Brasileira de Medicina Tropical
instname:Sociedade Brasileira de Medicina Tropical (SBMT)
instacron:SBMT
instname_str Sociedade Brasileira de Medicina Tropical (SBMT)
instacron_str SBMT
institution SBMT
reponame_str Revista da Sociedade Brasileira de Medicina Tropical
collection Revista da Sociedade Brasileira de Medicina Tropical
repository.name.fl_str_mv Revista da Sociedade Brasileira de Medicina Tropical - Sociedade Brasileira de Medicina Tropical (SBMT)
repository.mail.fl_str_mv ||dalmo@rsbmt.uftm.edu.br|| rsbmt@rsbmt.uftm.edu.br
_version_ 1752122154113040384