Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue?
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , , |
Tipo de documento: | Conjunto de dados |
Título da fonte: | SciELO Data |
Texto Completo: | https://doi.org/10.48331/scielodata.MT231Y |
Resumo: | This study aimed to analyze the functional profile of supragingival biofilm from sound (CAs), active (CAa), and inactive (CAi) enamel caries lesions from caries-active individuals to provide insights into the diversity of biological processes regarding biofilm dysbiosis. A metatranscriptome analysis was performed in biofilm samples collected from five caries active individuals. Total RNA was extracted, and the microbial cDNAs were obtained and sequenced (Illumina HiSeq3000). Trimmed data were submitted to the SqueezeMeta pipeline in the co-assembly mode for functional analysis and further differential gene expression analysis (DESeq2). Bioinformatics analysis of mRNAs revealed a similar functional profile related to all analyzed conditions (CAa, CAi, and CAs). However, active and inactive surfaces share up-regulated genes (gtsA; qrtT; tqsA; pimB; EPHX1) related to virulence traits that were not overrepresented in sound surfaces. From a functional perspective, what matters most is the individual carious status rather than the surface condition. Therefore, pooling samples from various sites can be done in studies of naturally developed oral biofilms, but should preferentially include carious surfaces. |
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doi:10.48331/scielodata.MT231Y |
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https://doi.org/10.48331/scielodata.MT231YEv, Laís DanielaPoloni, Joice FariaDamé-Teixeira, NailêCorralo, Daniela JorgeHenz, Sandra LianaDo, ThuyMaltz, MarisaParolo, Clarissa Cavalcanti FatturiReplication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue?SciELO DataThis study aimed to analyze the functional profile of supragingival biofilm from sound (CAs), active (CAa), and inactive (CAi) enamel caries lesions from caries-active individuals to provide insights into the diversity of biological processes regarding biofilm dysbiosis. A metatranscriptome analysis was performed in biofilm samples collected from five caries active individuals. Total RNA was extracted, and the microbial cDNAs were obtained and sequenced (Illumina HiSeq3000). Trimmed data were submitted to the SqueezeMeta pipeline in the co-assembly mode for functional analysis and further differential gene expression analysis (DESeq2). Bioinformatics analysis of mRNAs revealed a similar functional profile related to all analyzed conditions (CAa, CAi, and CAs). However, active and inactive surfaces share up-regulated genes (gtsA; qrtT; tqsA; pimB; EPHX1) related to virulence traits that were not overrepresented in sound surfaces. From a functional perspective, what matters most is the individual carious status rather than the surface condition. Therefore, pooling samples from various sites can be done in studies of naturally developed oral biofilms, but should preferentially include carious surfaces.2023-10-18info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/4.0Medicine, Health and Life SciencesDental CariesBiofilmsMicrobiotaGene Expression Profilinginfo:eu-repo/semantics/datasetinfo:eu-repo/semantics/datasetinfo:eu-repo/semantics/publishedVersionDatasetreponame:SciELO Datainstname:Scientific Electronic Library Online (SCIELO)instacron:SCIRepositório de Dados de PesquisaONGhttps://data.scielo.org/oai/requestdata@scielo.orgopendoar:2024-04-11T06:13:14SciELO Data - Scientific Electronic Library Online (SCIELO)falsedoi:10.48331/scielodata.MT231Y |
dc.title.none.fl_str_mv |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
title |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
spellingShingle |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? Ev, Laís Daniela Medicine, Health and Life Sciences Dental Caries Biofilms Microbiota Gene Expression Profiling |
title_short |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
title_full |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
title_fullStr |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
title_full_unstemmed |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
title_sort |
Replication Data for: Biofilm dysbiosis and caries activity: a surface or an individual issue? |
author |
Ev, Laís Daniela |
author_facet |
Ev, Laís Daniela Poloni, Joice Faria Damé-Teixeira, Nailê Corralo, Daniela Jorge Henz, Sandra Liana Do, Thuy Maltz, Marisa Parolo, Clarissa Cavalcanti Fatturi |
author_role |
author |
author2 |
Poloni, Joice Faria Damé-Teixeira, Nailê Corralo, Daniela Jorge Henz, Sandra Liana Do, Thuy Maltz, Marisa Parolo, Clarissa Cavalcanti Fatturi |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Ev, Laís Daniela Poloni, Joice Faria Damé-Teixeira, Nailê Corralo, Daniela Jorge Henz, Sandra Liana Do, Thuy Maltz, Marisa Parolo, Clarissa Cavalcanti Fatturi |
dc.subject.none.fl_str_mv |
Medicine, Health and Life Sciences Dental Caries Biofilms Microbiota Gene Expression Profiling |
topic |
Medicine, Health and Life Sciences Dental Caries Biofilms Microbiota Gene Expression Profiling |
description |
This study aimed to analyze the functional profile of supragingival biofilm from sound (CAs), active (CAa), and inactive (CAi) enamel caries lesions from caries-active individuals to provide insights into the diversity of biological processes regarding biofilm dysbiosis. A metatranscriptome analysis was performed in biofilm samples collected from five caries active individuals. Total RNA was extracted, and the microbial cDNAs were obtained and sequenced (Illumina HiSeq3000). Trimmed data were submitted to the SqueezeMeta pipeline in the co-assembly mode for functional analysis and further differential gene expression analysis (DESeq2). Bioinformatics analysis of mRNAs revealed a similar functional profile related to all analyzed conditions (CAa, CAi, and CAs). However, active and inactive surfaces share up-regulated genes (gtsA; qrtT; tqsA; pimB; EPHX1) related to virulence traits that were not overrepresented in sound surfaces. From a functional perspective, what matters most is the individual carious status rather than the surface condition. Therefore, pooling samples from various sites can be done in studies of naturally developed oral biofilms, but should preferentially include carious surfaces. |
publishDate |
2023 |
dc.date.issued.fl_str_mv |
2023-10-18 |
dc.type.openaire.fl_str_mv |
info:eu-repo/semantics/dataset |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.none.fl_str_mv |
info:eu-repo/semantics/dataset |
format |
dataset |
status_str |
publishedVersion |
dc.identifier.url.fl_str_mv |
https://doi.org/10.48331/scielodata.MT231Y |
url |
https://doi.org/10.48331/scielodata.MT231Y |
dc.rights.openaire.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/4.0 |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by/4.0 |
dc.format.none.fl_str_mv |
Dataset |
dc.publisher.none.fl_str_mv |
SciELO Data |
publisher.none.fl_str_mv |
SciELO Data |
dc.source.none.fl_str_mv |
reponame:SciELO Data instname:Scientific Electronic Library Online (SCIELO) instacron:SCI |
instname_str |
Scientific Electronic Library Online (SCIELO) |
instacron_str |
SCI |
institution |
SCI |
reponame_str |
SciELO Data |
collection |
SciELO Data |
repository.name.fl_str_mv |
SciELO Data - Scientific Electronic Library Online (SCIELO) |
repository.mail.fl_str_mv |
data@scielo.org |
_version_ |
1797042023581089792 |