Extraction of genomic DNA from solid tissues of teleostei fish

Detalhes bibliográficos
Autor(a) principal: Marengoni, Nilton Garcia
Data de Publicação: 2006
Outros Autores: Machado, Marcia Regina Fragoso, Gasparino, Eliane
Tipo de documento: Artigo
Idioma: por
Título da fonte: Semina. Ciências Agrárias (Online)
Texto Completo: https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2403
Resumo: The object of this work was to extract the genomic DNA of solid tissue from Nile tilapia (Oreochromis niloticus), pacu (Piaractus mesopotamicus), piau (Leporinus sp.) and curimba (Prochilodus lineatus), using the methods Proteinase K (PK) and Cetyltrimethylammiun Bromide (CTAB). The DNA extracted from samples of liver, kidney, tail fin, heart, muscle and gills were quantified in spectrophotometer to determine the concentration and purity through the ratio A260nm/A280nm. The data were statistically analyzed and there were no significant effect of interaction between species and tissues about the purity and concentration of the DNA obtained with CTAB, but for the PK there were interaction about the concentration. Using the CTAB method was verified that the mean quantity of DNA in the curimba kidney was significantly (p < 0.05) lower (106.98 ?g/mL) than the value observed in pacu, whereas, did not differ from the variables found in piau (497.20 ?g/mL) and tilapia (234.50 ?g/mL). For the PK method, the mean quantity of DNA using the muscle of Nile tilapia presented the lowest value (117.35 ?g/mL) with reference to the other tissues and analyzed species (P < 0.05). The ratio A260nm/A280nm changed from 1.7 to 2.0 and 1.6 to 2.1 for the PK and CTAB methods, respectively. It may be concluded that the DNA purity was satisfactory for the different tissues on the four species of fish.
id UEL-11_a57b67c55036c5686af581e8afdd402f
oai_identifier_str oai:ojs.pkp.sfu.ca:article/2403
network_acronym_str UEL-11
network_name_str Semina. Ciências Agrárias (Online)
repository_id_str
spelling Extraction of genomic DNA from solid tissues of teleostei fishExtração de DNA genômico em tecidos sólidos de peixes teleósteosLeporinus spOreochromis niloticusPiaractus mesopotamicusProchilodus lineatusDNA.Leporinus spOreochromis niloticusPiaractus mesopotamicusProchilodus lineatusDNA.The object of this work was to extract the genomic DNA of solid tissue from Nile tilapia (Oreochromis niloticus), pacu (Piaractus mesopotamicus), piau (Leporinus sp.) and curimba (Prochilodus lineatus), using the methods Proteinase K (PK) and Cetyltrimethylammiun Bromide (CTAB). The DNA extracted from samples of liver, kidney, tail fin, heart, muscle and gills were quantified in spectrophotometer to determine the concentration and purity through the ratio A260nm/A280nm. The data were statistically analyzed and there were no significant effect of interaction between species and tissues about the purity and concentration of the DNA obtained with CTAB, but for the PK there were interaction about the concentration. Using the CTAB method was verified that the mean quantity of DNA in the curimba kidney was significantly (p < 0.05) lower (106.98 ?g/mL) than the value observed in pacu, whereas, did not differ from the variables found in piau (497.20 ?g/mL) and tilapia (234.50 ?g/mL). For the PK method, the mean quantity of DNA using the muscle of Nile tilapia presented the lowest value (117.35 ?g/mL) with reference to the other tissues and analyzed species (P < 0.05). The ratio A260nm/A280nm changed from 1.7 to 2.0 and 1.6 to 2.1 for the PK and CTAB methods, respectively. It may be concluded that the DNA purity was satisfactory for the different tissues on the four species of fish.O objetivo desse trabalho foi extrair o DNA genômico de tecidos sólidos de tilápia do Nilo (Oreochromis niloticus), pacu (Piaractus mesopotamicus), piau (Leporinus sp.) e curimba (Prochilodus lineatus), utilizando os métodos Proteinase K (PK) e Brometo de Cetiltrimetilamônio (CTAB). O DNA extraído das amostras de fígado, rim, nadadeira caudal, coração, músculo e brânquias foi quantificado em espectrofotômetro para determinação da concentração e da pureza por meio da razão A260nm/A280nm. Os dados foram estatisticamente analisados e não se observou efeito significativo para a interação entre espécies e tecidos em relação à pureza e concentração do DNA obtido a partir do CTAB, porém para PK houve interação em relação à concentração. Utilizando o método CTAB verificou-se que a concentração média de DNA no rim de curimba foi significativamente (p < 0,05) inferior (106,98 ?g/mL) à observada em pacu (1727,90 ?g/mL), porém não diferiram das encontradas em piau (497,20 ?g/mL) e tilápia (234,50 ?g/ mL). Para o método PK, a concentração média de DNA utilizando o músculo de tilápia do Nilo apresentou o menor valor (117,35 ?g/mL) em relação aos demais tecidos e espécies analisadas (p < 0,05). A razão A260nm/A280nm variou de 1,7 a 2,0 e 1,6 a 2,1 para os métodos PK e CTAB, respectivamente. Conclui-se que a pureza do DNA foi alcançada nos diferentes tecidos estudados, demonstrando que o método PK pode ser utilizado para essas quatro espécies de peixes.UEL2006-06-30info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/240310.5433/1679-0359.2006v27n1p99Semina: Ciências Agrárias; Vol. 27 No. 1 (2006); 99-106Semina: Ciências Agrárias; v. 27 n. 1 (2006); 99-1061679-03591676-546Xreponame:Semina. Ciências Agrárias (Online)instname:Universidade Estadual de Londrina (UEL)instacron:UELporhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2403/2057Marengoni, Nilton GarciaMachado, Marcia Regina FragosoGasparino, Elianeinfo:eu-repo/semantics/openAccess2010-10-26T18:24:04Zoai:ojs.pkp.sfu.ca:article/2403Revistahttp://www.uel.br/revistas/uel/index.php/semagrariasPUBhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/oaisemina.agrarias@uel.br1679-03591676-546Xopendoar:2010-10-26T18:24:04Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL)false
dc.title.none.fl_str_mv Extraction of genomic DNA from solid tissues of teleostei fish
Extração de DNA genômico em tecidos sólidos de peixes teleósteos
title Extraction of genomic DNA from solid tissues of teleostei fish
spellingShingle Extraction of genomic DNA from solid tissues of teleostei fish
Marengoni, Nilton Garcia
Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
title_short Extraction of genomic DNA from solid tissues of teleostei fish
title_full Extraction of genomic DNA from solid tissues of teleostei fish
title_fullStr Extraction of genomic DNA from solid tissues of teleostei fish
title_full_unstemmed Extraction of genomic DNA from solid tissues of teleostei fish
title_sort Extraction of genomic DNA from solid tissues of teleostei fish
author Marengoni, Nilton Garcia
author_facet Marengoni, Nilton Garcia
Machado, Marcia Regina Fragoso
Gasparino, Eliane
author_role author
author2 Machado, Marcia Regina Fragoso
Gasparino, Eliane
author2_role author
author
dc.contributor.author.fl_str_mv Marengoni, Nilton Garcia
Machado, Marcia Regina Fragoso
Gasparino, Eliane
dc.subject.por.fl_str_mv Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
topic Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
Leporinus sp
Oreochromis niloticus
Piaractus mesopotamicus
Prochilodus lineatus
DNA.
description The object of this work was to extract the genomic DNA of solid tissue from Nile tilapia (Oreochromis niloticus), pacu (Piaractus mesopotamicus), piau (Leporinus sp.) and curimba (Prochilodus lineatus), using the methods Proteinase K (PK) and Cetyltrimethylammiun Bromide (CTAB). The DNA extracted from samples of liver, kidney, tail fin, heart, muscle and gills were quantified in spectrophotometer to determine the concentration and purity through the ratio A260nm/A280nm. The data were statistically analyzed and there were no significant effect of interaction between species and tissues about the purity and concentration of the DNA obtained with CTAB, but for the PK there were interaction about the concentration. Using the CTAB method was verified that the mean quantity of DNA in the curimba kidney was significantly (p < 0.05) lower (106.98 ?g/mL) than the value observed in pacu, whereas, did not differ from the variables found in piau (497.20 ?g/mL) and tilapia (234.50 ?g/mL). For the PK method, the mean quantity of DNA using the muscle of Nile tilapia presented the lowest value (117.35 ?g/mL) with reference to the other tissues and analyzed species (P < 0.05). The ratio A260nm/A280nm changed from 1.7 to 2.0 and 1.6 to 2.1 for the PK and CTAB methods, respectively. It may be concluded that the DNA purity was satisfactory for the different tissues on the four species of fish.
publishDate 2006
dc.date.none.fl_str_mv 2006-06-30
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2403
10.5433/1679-0359.2006v27n1p99
url https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2403
identifier_str_mv 10.5433/1679-0359.2006v27n1p99
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2403/2057
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv UEL
publisher.none.fl_str_mv UEL
dc.source.none.fl_str_mv Semina: Ciências Agrárias; Vol. 27 No. 1 (2006); 99-106
Semina: Ciências Agrárias; v. 27 n. 1 (2006); 99-106
1679-0359
1676-546X
reponame:Semina. Ciências Agrárias (Online)
instname:Universidade Estadual de Londrina (UEL)
instacron:UEL
instname_str Universidade Estadual de Londrina (UEL)
instacron_str UEL
institution UEL
reponame_str Semina. Ciências Agrárias (Online)
collection Semina. Ciências Agrárias (Online)
repository.name.fl_str_mv Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL)
repository.mail.fl_str_mv semina.agrarias@uel.br
_version_ 1799306058041131008