Genetic diversity of tambaqui broodstocks in stock enhancement programs
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Semina. Ciências Agrárias (Online) |
Texto Completo: | https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/26300 |
Resumo: | Natural populations of tambaqui (Colossoma macropomum) have significantly decreased in recent decades especially due to human extraction activities. So that the environmental impact may be reduced, the restocking of fish and increase in fish production are enhanced. Genetic evaluations using molecular markers are essential for this purpose. Current study evaluates the genetic variability of two tambaqui broodstocks used in restocking programs. Sixty-five samples (33 samples from broodstock A and 32 samples from broodstock B) were collected. DNA was extracted from caudal fin samples, with the amplification of four microsatellite loci: Cm1A11 (EU685307) Cm1C8 (EU685308) Cm1F4 (EU685311) and Cm1H8 (EU685315). Fourteen alleles in the stock of broodstock A were produced, five alleles for Cm1A11 locus (230, 255, 260, 270 and 276 bp), three alleles Cm1C8 (239, 260, and 273 bp), two alleles Cm1F4 (211 and 245 bp), four alleles for Cm1H8 (275, 290, 320 and 331 bp) and two unique alleles were found for Cm1A11 loci (alleles 270 and 276 bp) and Cm1H8 (alleles 275 and 331 bp). In broodstock B, ten alleles were produced, the same alleles of the first stock except for alleles 270 and 276 bp in Cm1A11 locus and 275 and 331 bp in Cm1H8 locus. Broodstock A revealed low frequency alleles in Cm1A11 loci, Cm1C8, Cm1F4 and Cm1H8, whereas broodstock B had no locus with low allelic frequency. Loci Cm1A11, Cm1C8 and Cm1H8 exhibited significant deficit of heterozygotes in both broodstocks, revealing changes in Hardy-Weinberg equilibrium. Genetic diversity between stocks was 0.1120, whilst genetic similarity was 0.894, with FST rate = 0.05, and Nm = 3.93, indicating gene flow between the two broodstocks. Results show that broodstocks are genetically closely related, with no great genetic variability. Strategies such as a previous genetic analysis of breeding with its marking, use of a large Ne crossing between the most genetically divergent specimens, and the introduction of new genetic material to broodstocks may maximize genetic diversity and minimize inbreeding within the next generation. |
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Genetic diversity of tambaqui broodstocks in stock enhancement programsDiversidade genética de estoques de reprodutores de tambaqui utilizados em programas de repovoamentoColossoma macropomumGenetics conservationMolecular markersMicrosatellite.Colossoma macropomumConservação genéticaMarcadores molecularesMicrossatélite.Natural populations of tambaqui (Colossoma macropomum) have significantly decreased in recent decades especially due to human extraction activities. So that the environmental impact may be reduced, the restocking of fish and increase in fish production are enhanced. Genetic evaluations using molecular markers are essential for this purpose. Current study evaluates the genetic variability of two tambaqui broodstocks used in restocking programs. Sixty-five samples (33 samples from broodstock A and 32 samples from broodstock B) were collected. DNA was extracted from caudal fin samples, with the amplification of four microsatellite loci: Cm1A11 (EU685307) Cm1C8 (EU685308) Cm1F4 (EU685311) and Cm1H8 (EU685315). Fourteen alleles in the stock of broodstock A were produced, five alleles for Cm1A11 locus (230, 255, 260, 270 and 276 bp), three alleles Cm1C8 (239, 260, and 273 bp), two alleles Cm1F4 (211 and 245 bp), four alleles for Cm1H8 (275, 290, 320 and 331 bp) and two unique alleles were found for Cm1A11 loci (alleles 270 and 276 bp) and Cm1H8 (alleles 275 and 331 bp). In broodstock B, ten alleles were produced, the same alleles of the first stock except for alleles 270 and 276 bp in Cm1A11 locus and 275 and 331 bp in Cm1H8 locus. Broodstock A revealed low frequency alleles in Cm1A11 loci, Cm1C8, Cm1F4 and Cm1H8, whereas broodstock B had no locus with low allelic frequency. Loci Cm1A11, Cm1C8 and Cm1H8 exhibited significant deficit of heterozygotes in both broodstocks, revealing changes in Hardy-Weinberg equilibrium. Genetic diversity between stocks was 0.1120, whilst genetic similarity was 0.894, with FST rate = 0.05, and Nm = 3.93, indicating gene flow between the two broodstocks. Results show that broodstocks are genetically closely related, with no great genetic variability. Strategies such as a previous genetic analysis of breeding with its marking, use of a large Ne crossing between the most genetically divergent specimens, and the introduction of new genetic material to broodstocks may maximize genetic diversity and minimize inbreeding within the next generation.A população natural do tambaqui (Colossoma macropomum) está reduzindo significativamente nas últimas décadas devido às ações antrópicas, como o extrativismo. Para diminuir este impacto ambiental, o repovoamento de peixes e aumento da produção piscícola estão sendo realizados. Para tanto, avaliações genéticas por meio de marcadores moleculares são fundamentais. Desta forma, o objetivo deste trabalho foi avaliar a variabilidade genética de dois estoques de reprodutores de tambaqui utilizados em programas de repovoamento. Foram coletadas 65 amostras (33 amostras do estoque A e 32 amostras do estoque B). O DNA foi extraído de amostras da nadadeira caudal, com a amplificação de quatro loci microssatélite: Cm1A11 (EU685307), Cm1C8 (EU685308), Cm1F4 (EU685311) e Cm1H8 (EU685315). Foram produzidos 14 alelos no estoque de reprodutores A, cinco alelos para o locus Cm1A11 (230, 255, 260, 270 e 276 pb), três alelos para Cm1C8 (239, 260 e 273 pb), dois alelos para Cm1F4 (211 e 245 pb), quatro alelos para Cm1H8 (275, 290, 320 e 331 pb) e dois alelos exclusivos foram encontrados para os loci Cm1A11 (alelos 270 e 276 pb) e Cm1H8 (alelos 275 e 331 pb). Para o estoque de reprodutores B foram produzidos 10 alelos, os mesmos alelos do primeiro estoque, exceto para os alelos 270 e 276 pb no locus Cm1A11 e 275 e 331 pb no locus Cm1H8. No estoque de reprodutores A foi observado alelos de baixa frequência nos loci Cm1A11, Cm1C8, Cm1F4 e Cm1H8. Já o estoque de reprodutores B não apresentou locus com baixa frequência alélica. Os loci Cm1A11, Cm1C8 e Cm1H8 exibiram significativo défict de heterozigotos em ambos os estoques de reprodutores, indicando alteração no equilíbrio de Hardy-Weinberg. A divergência genética foi de 0,1120 entre os estoques, enquanto a similaridade genética foi de 0,894, com o valor de FST igual a 0,05, e o Nm igual a 3,93 indicando fluxo gênico entre os dois estoques de reprodutores. Os resultados obtidos revelam que os estoques de reprodutores estão geneticamente muito relacionados e que ambos os estoques não apresentam alta variabilidade genética. Estratégias como uma prévia análise genética dos reprodutores com sua marcação, utilização de um grande Ne, cruzamento entre indivíduos geneticamente mais divergentes, além da introdução de um novo material genético aos estoques de reprodutores, poderiam ser utilizadas para maximizar a variabilidade genética e minimizar a endogamia na próxima geração.UEL2017-06-13info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAvaliado por paresPesquisa básicaapplication/pdfhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/2630010.5433/1679-0359.2017v38n3p1665Semina: Ciências Agrárias; Vol. 38 No. 3 (2017); 1665-1670Semina: Ciências Agrárias; v. 38 n. 3 (2017); 1665-16701679-03591676-546Xreponame:Semina. Ciências Agrárias (Online)instname:Universidade Estadual de Londrina (UEL)instacron:UELenghttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/26300/21085Copyright (c) 2017 Semina: Ciências Agráriashttp://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccessMoraes Neto, AmericoAyres, Denise RochaStreit Junior, Danilo PedroLopera-Barrero, Nelson MauricioFerraz Filho, Paulo BahienseCorrêa Filho, Ruy Alberto CaetanoSantana, Annaiza Braga BignardiMarciano, Caroline Michele MarinhoMurari, Pâmela Juliana FurlanPovh, Jayme Aparecido2022-10-24T14:10:52Zoai:ojs.pkp.sfu.ca:article/26300Revistahttp://www.uel.br/revistas/uel/index.php/semagrariasPUBhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/oaisemina.agrarias@uel.br1679-03591676-546Xopendoar:2022-10-24T14:10:52Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL)false |
dc.title.none.fl_str_mv |
Genetic diversity of tambaqui broodstocks in stock enhancement programs Diversidade genética de estoques de reprodutores de tambaqui utilizados em programas de repovoamento |
title |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
spellingShingle |
Genetic diversity of tambaqui broodstocks in stock enhancement programs Moraes Neto, Americo Colossoma macropomum Genetics conservation Molecular markers Microsatellite. Colossoma macropomum Conservação genética Marcadores moleculares Microssatélite. |
title_short |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
title_full |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
title_fullStr |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
title_full_unstemmed |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
title_sort |
Genetic diversity of tambaqui broodstocks in stock enhancement programs |
author |
Moraes Neto, Americo |
author_facet |
Moraes Neto, Americo Ayres, Denise Rocha Streit Junior, Danilo Pedro Lopera-Barrero, Nelson Mauricio Ferraz Filho, Paulo Bahiense Corrêa Filho, Ruy Alberto Caetano Santana, Annaiza Braga Bignardi Marciano, Caroline Michele Marinho Murari, Pâmela Juliana Furlan Povh, Jayme Aparecido |
author_role |
author |
author2 |
Ayres, Denise Rocha Streit Junior, Danilo Pedro Lopera-Barrero, Nelson Mauricio Ferraz Filho, Paulo Bahiense Corrêa Filho, Ruy Alberto Caetano Santana, Annaiza Braga Bignardi Marciano, Caroline Michele Marinho Murari, Pâmela Juliana Furlan Povh, Jayme Aparecido |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Moraes Neto, Americo Ayres, Denise Rocha Streit Junior, Danilo Pedro Lopera-Barrero, Nelson Mauricio Ferraz Filho, Paulo Bahiense Corrêa Filho, Ruy Alberto Caetano Santana, Annaiza Braga Bignardi Marciano, Caroline Michele Marinho Murari, Pâmela Juliana Furlan Povh, Jayme Aparecido |
dc.subject.por.fl_str_mv |
Colossoma macropomum Genetics conservation Molecular markers Microsatellite. Colossoma macropomum Conservação genética Marcadores moleculares Microssatélite. |
topic |
Colossoma macropomum Genetics conservation Molecular markers Microsatellite. Colossoma macropomum Conservação genética Marcadores moleculares Microssatélite. |
description |
Natural populations of tambaqui (Colossoma macropomum) have significantly decreased in recent decades especially due to human extraction activities. So that the environmental impact may be reduced, the restocking of fish and increase in fish production are enhanced. Genetic evaluations using molecular markers are essential for this purpose. Current study evaluates the genetic variability of two tambaqui broodstocks used in restocking programs. Sixty-five samples (33 samples from broodstock A and 32 samples from broodstock B) were collected. DNA was extracted from caudal fin samples, with the amplification of four microsatellite loci: Cm1A11 (EU685307) Cm1C8 (EU685308) Cm1F4 (EU685311) and Cm1H8 (EU685315). Fourteen alleles in the stock of broodstock A were produced, five alleles for Cm1A11 locus (230, 255, 260, 270 and 276 bp), three alleles Cm1C8 (239, 260, and 273 bp), two alleles Cm1F4 (211 and 245 bp), four alleles for Cm1H8 (275, 290, 320 and 331 bp) and two unique alleles were found for Cm1A11 loci (alleles 270 and 276 bp) and Cm1H8 (alleles 275 and 331 bp). In broodstock B, ten alleles were produced, the same alleles of the first stock except for alleles 270 and 276 bp in Cm1A11 locus and 275 and 331 bp in Cm1H8 locus. Broodstock A revealed low frequency alleles in Cm1A11 loci, Cm1C8, Cm1F4 and Cm1H8, whereas broodstock B had no locus with low allelic frequency. Loci Cm1A11, Cm1C8 and Cm1H8 exhibited significant deficit of heterozygotes in both broodstocks, revealing changes in Hardy-Weinberg equilibrium. Genetic diversity between stocks was 0.1120, whilst genetic similarity was 0.894, with FST rate = 0.05, and Nm = 3.93, indicating gene flow between the two broodstocks. Results show that broodstocks are genetically closely related, with no great genetic variability. Strategies such as a previous genetic analysis of breeding with its marking, use of a large Ne crossing between the most genetically divergent specimens, and the introduction of new genetic material to broodstocks may maximize genetic diversity and minimize inbreeding within the next generation. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-06-13 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Avaliado por pares Pesquisa básica |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/26300 10.5433/1679-0359.2017v38n3p1665 |
url |
https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/26300 |
identifier_str_mv |
10.5433/1679-0359.2017v38n3p1665 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/26300/21085 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2017 Semina: Ciências Agrárias http://creativecommons.org/licenses/by-nc/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2017 Semina: Ciências Agrárias http://creativecommons.org/licenses/by-nc/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
UEL |
publisher.none.fl_str_mv |
UEL |
dc.source.none.fl_str_mv |
Semina: Ciências Agrárias; Vol. 38 No. 3 (2017); 1665-1670 Semina: Ciências Agrárias; v. 38 n. 3 (2017); 1665-1670 1679-0359 1676-546X reponame:Semina. Ciências Agrárias (Online) instname:Universidade Estadual de Londrina (UEL) instacron:UEL |
instname_str |
Universidade Estadual de Londrina (UEL) |
instacron_str |
UEL |
institution |
UEL |
reponame_str |
Semina. Ciências Agrárias (Online) |
collection |
Semina. Ciências Agrárias (Online) |
repository.name.fl_str_mv |
Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL) |
repository.mail.fl_str_mv |
semina.agrarias@uel.br |
_version_ |
1799306076355559424 |