Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
Autor(a) principal: | |
---|---|
Data de Publicação: | 2024 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Acta Scientiarum Biological Sciences |
Texto Completo: | https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741 |
Resumo: | According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance. |
id |
UEM-1_ff820fa3ac6a635f19477d841bc2d80e |
---|---|
oai_identifier_str |
oai:periodicos.uem.br/ojs:article/66741 |
network_acronym_str |
UEM-1 |
network_name_str |
Acta Scientiarum Biological Sciences |
repository_id_str |
|
spelling |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Molecular Markers; Genetic Conservation; ISSR.Molecular Markers; Genetic Conservation; ISSR.According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.Universidade Estadual De Maringá2024-05-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/6674110.4025/actascibiolsci.v46i1.66741Acta Scientiarum. Biological Sciences; Vol 46 (2024): Publicação contínua; e66741Acta Scientiarum. Biological Sciences; v. 46 (2024): Publicação contínua; e667411807-863X1679-9283reponame:Acta Scientiarum Biological Sciencesinstname:Universidade Estadual de Maringá (UEM)instacron:UEMenghttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741/751375157538Copyright (c) 2024 Acta Scientiarum. Biological Scienceshttp://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessVieira, Anderson Carvalho Silveira, Lucas Amorim Silva, Carlos Bernard Moreno Cerqueira Santos, Elisa Susilene Lisboa dos 2024-05-06T18:07:42Zoai:periodicos.uem.br/ojs:article/66741Revistahttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/PUBhttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/oai||actabiol@uem.br1807-863X1679-9283opendoar:2024-05-06T18:07:42Acta Scientiarum Biological Sciences - Universidade Estadual de Maringá (UEM)false |
dc.title.none.fl_str_mv |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
title |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
spellingShingle |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Vieira, Anderson Carvalho Molecular Markers; Genetic Conservation; ISSR. Molecular Markers; Genetic Conservation; ISSR. |
title_short |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
title_full |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
title_fullStr |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
title_full_unstemmed |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
title_sort |
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) |
author |
Vieira, Anderson Carvalho |
author_facet |
Vieira, Anderson Carvalho Silveira, Lucas Amorim Silva, Carlos Bernard Moreno Cerqueira Santos, Elisa Susilene Lisboa dos |
author_role |
author |
author2 |
Silveira, Lucas Amorim Silva, Carlos Bernard Moreno Cerqueira Santos, Elisa Susilene Lisboa dos |
author2_role |
author author author |
dc.contributor.author.fl_str_mv |
Vieira, Anderson Carvalho Silveira, Lucas Amorim Silva, Carlos Bernard Moreno Cerqueira Santos, Elisa Susilene Lisboa dos |
dc.subject.por.fl_str_mv |
Molecular Markers; Genetic Conservation; ISSR. Molecular Markers; Genetic Conservation; ISSR. |
topic |
Molecular Markers; Genetic Conservation; ISSR. Molecular Markers; Genetic Conservation; ISSR. |
description |
According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance. |
publishDate |
2024 |
dc.date.none.fl_str_mv |
2024-05-06 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741 10.4025/actascibiolsci.v46i1.66741 |
url |
https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741 |
identifier_str_mv |
10.4025/actascibiolsci.v46i1.66741 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741/751375157538 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2024 Acta Scientiarum. Biological Sciences http://creativecommons.org/licenses/by/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2024 Acta Scientiarum. Biological Sciences http://creativecommons.org/licenses/by/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Estadual De Maringá |
publisher.none.fl_str_mv |
Universidade Estadual De Maringá |
dc.source.none.fl_str_mv |
Acta Scientiarum. Biological Sciences; Vol 46 (2024): Publicação contínua; e66741 Acta Scientiarum. Biological Sciences; v. 46 (2024): Publicação contínua; e66741 1807-863X 1679-9283 reponame:Acta Scientiarum Biological Sciences instname:Universidade Estadual de Maringá (UEM) instacron:UEM |
instname_str |
Universidade Estadual de Maringá (UEM) |
instacron_str |
UEM |
institution |
UEM |
reponame_str |
Acta Scientiarum Biological Sciences |
collection |
Acta Scientiarum Biological Sciences |
repository.name.fl_str_mv |
Acta Scientiarum Biological Sciences - Universidade Estadual de Maringá (UEM) |
repository.mail.fl_str_mv |
||actabiol@uem.br |
_version_ |
1799317390470676480 |