Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)

Detalhes bibliográficos
Autor(a) principal: Vieira, Anderson Carvalho
Data de Publicação: 2024
Outros Autores: Silveira, Lucas Amorim, Silva, Carlos Bernard Moreno Cerqueira, Santos, Elisa Susilene Lisboa dos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Acta Scientiarum Biological Sciences
Texto Completo: https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741
Resumo: According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.
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spelling Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil) Molecular Markers; Genetic Conservation; ISSR.Molecular Markers; Genetic Conservation; ISSR.According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.Universidade Estadual De Maringá2024-05-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/6674110.4025/actascibiolsci.v46i1.66741Acta Scientiarum. Biological Sciences; Vol 46 (2024): Publicação contínua; e66741Acta Scientiarum. Biological Sciences; v. 46 (2024): Publicação contínua; e667411807-863X1679-9283reponame:Acta Scientiarum Biological Sciencesinstname:Universidade Estadual de Maringá (UEM)instacron:UEMenghttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741/751375157538Copyright (c) 2024 Acta Scientiarum. Biological Scienceshttp://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessVieira, Anderson Carvalho Silveira, Lucas Amorim Silva, Carlos Bernard Moreno Cerqueira Santos, Elisa Susilene Lisboa dos 2024-05-06T18:07:42Zoai:periodicos.uem.br/ojs:article/66741Revistahttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/PUBhttps://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/oai||actabiol@uem.br1807-863X1679-9283opendoar:2024-05-06T18:07:42Acta Scientiarum Biological Sciences - Universidade Estadual de Maringá (UEM)false
dc.title.none.fl_str_mv Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
title Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
spellingShingle Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
Vieira, Anderson Carvalho
Molecular Markers; Genetic Conservation; ISSR.
Molecular Markers; Genetic Conservation; ISSR.
title_short Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
title_full Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
title_fullStr Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
title_full_unstemmed Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
title_sort Genetic diversity and structure of Melocactus conoideus Buin. & Bred (Cactaceae), a critically endangered species endemic to southwestern Bahia State (Brazil)
author Vieira, Anderson Carvalho
author_facet Vieira, Anderson Carvalho
Silveira, Lucas Amorim
Silva, Carlos Bernard Moreno Cerqueira
Santos, Elisa Susilene Lisboa dos
author_role author
author2 Silveira, Lucas Amorim
Silva, Carlos Bernard Moreno Cerqueira
Santos, Elisa Susilene Lisboa dos
author2_role author
author
author
dc.contributor.author.fl_str_mv Vieira, Anderson Carvalho
Silveira, Lucas Amorim
Silva, Carlos Bernard Moreno Cerqueira
Santos, Elisa Susilene Lisboa dos
dc.subject.por.fl_str_mv Molecular Markers; Genetic Conservation; ISSR.
Molecular Markers; Genetic Conservation; ISSR.
topic Molecular Markers; Genetic Conservation; ISSR.
Molecular Markers; Genetic Conservation; ISSR.
description According to the International Union for Conservation of Nature [IUCN], Melocactus conoideus Buin. & Bred is a critically endangered cactus species, and genetic studies are still needed to support conservation strategies. Thus, this study aimed to characterize the genetic diversity and structure of M. conoideus using Inter Simple Sequence Repeats (ISSR) markers. We amplified the genomic DNA of 126 M. conoideus genotypes from the municipality of Vitória da Conquista, state of Bahia (Brazil), obtained within and outside the limits of the M. conoideus Environmental Reserve. To this end, 13 ISSR primers were used, and the genetic amplification profile was subjected to statistical analysis of genetic diversity and structure. One hundred and ninety-one markers were analyzed, 188 of which (97.7%) were polymorphic. Moderate genetic diversity (h = 0.29) was observed, with a significant variation when considering protected and unprotected regions. The set of markers varied between informative and uninformative (mean PIC = 0.24), and genetic differentiation ranged from moderate to high (Gst = 0.32) between populations inside and outside the environmental reserve. Gene flow between populations (Nm) was estimated at 1.02. Analysis of molecular variance revealed 33% of genetic variation between populations and 67% within populations. Bayesian analysis and principal coordinate analysis (PCoA) confirmed the existence of two groups (K=2), with individuals from the reserve showing homogeneity for a single gene pool. This result highlights the influence of exclusive genomic regions on the genetic structure of the species. These results suggest that the auto-ecology of M. conoideus influences variability and differentiation levels, besides contributing to genetic structuring in subpopulations. Our findings may help in genetic conservation and management planning, as well as in the in situ demographic expansion used by the bodies responsible for M. conoideus population maintenance.
publishDate 2024
dc.date.none.fl_str_mv 2024-05-06
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741
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url https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741
identifier_str_mv 10.4025/actascibiolsci.v46i1.66741
dc.language.iso.fl_str_mv eng
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dc.relation.none.fl_str_mv https://periodicos.uem.br/ojs/index.php/ActaSciBiolSci/article/view/66741/751375157538
dc.rights.driver.fl_str_mv Copyright (c) 2024 Acta Scientiarum. Biological Sciences
http://creativecommons.org/licenses/by/4.0
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rights_invalid_str_mv Copyright (c) 2024 Acta Scientiarum. Biological Sciences
http://creativecommons.org/licenses/by/4.0
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dc.publisher.none.fl_str_mv Universidade Estadual De Maringá
publisher.none.fl_str_mv Universidade Estadual De Maringá
dc.source.none.fl_str_mv Acta Scientiarum. Biological Sciences; Vol 46 (2024): Publicação contínua; e66741
Acta Scientiarum. Biological Sciences; v. 46 (2024): Publicação contínua; e66741
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