Stochastic strategy to analyze protein folding

Detalhes bibliográficos
Autor(a) principal: Nogueira Júnior, E.
Data de Publicação: 2005
Outros Autores: Moret, M. A., Bisch, Paulo Mascarello, Pascutti, P. G.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFBA
Texto Completo: http://repositorio.ufba.br/ri/handle/ri/13633
Resumo: Texto completo: acesso restrito. p.353–364
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spelling Nogueira Júnior, E.Moret, M. A.Bisch, Paulo MascarelloPascutti, P. G.Nogueira Júnior, E.Moret, M. A.Bisch, Paulo MascarelloPascutti, P. G.2013-11-13T17:28:13Z20050378-4371http://repositorio.ufba.br/ri/handle/ri/13633v. 353, n. 1Texto completo: acesso restrito. p.353–364We propose a stochastic approach to combine methods from computational physics and Tsallis statistics in order to analyze the potential energy hypersurface of the proteins. This approach enables us to study protein folding by the topology of the energy hypersurface close to the native structures. As a bonus, this stochastic procedure allows us to obtain some of the possible intermediate states of protein folding. In particular, we describe results which suggest that the enthalpy drives the process of protein folding close to the native state. Finally, we propose an alternative view of the process of protein folding.Submitted by Edileide Reis (leyde-landy@hotmail.com) on 2013-11-13T10:44:25Z No. of bitstreams: 1 Nougueira Jr..pdf: 291331 bytes, checksum: 11639db4dd44f694d68fe309903bcb99 (MD5)Approved for entry into archive by Rodrigo Meirelles (rodrigomei@ufba.br) on 2013-11-13T17:28:13Z (GMT) No. of bitstreams: 1 Nougueira Jr..pdf: 291331 bytes, checksum: 11639db4dd44f694d68fe309903bcb99 (MD5)Made available in DSpace on 2013-11-13T17:28:13Z (GMT). No. of bitstreams: 1 Nougueira Jr..pdf: 291331 bytes, checksum: 11639db4dd44f694d68fe309903bcb99 (MD5) Previous issue date: 2005http://dx.doi.org.ez10.periodicos.capes.gov.br/10.1016/j.physa.2005.01.048reponame:Repositório Institucional da UFBAinstname:Universidade Federal da Bahia (UFBA)instacron:UFBASecondary structure foldingTsallis statisticsGeneralized Simulated AnnealingStochastic strategy to analyze protein foldingPhysica A: Statistical Mechanics and its Applicationsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article10000-01-01info:eu-repo/semantics/openAccessengORIGINALNougueira Jr..pdfNougueira Jr..pdfapplication/pdf291331https://repositorio.ufba.br/bitstream/ri/13633/1/Nougueira%20Jr..pdf11639db4dd44f694d68fe309903bcb99MD51LICENSElicense.txtlicense.txttext/plain1345https://repositorio.ufba.br/bitstream/ri/13633/2/license.txtff6eaa8b858ea317fded99f125f5fcd0MD52TEXTNougueira Jr..pdf.txtNougueira Jr..pdf.txtExtracted texttext/plain29180https://repositorio.ufba.br/bitstream/ri/13633/3/Nougueira%20Jr..pdf.txt175601b1b6c6011a397442d6fc118926MD53ri/136332022-07-05 14:03:49.035oai:repositorio.ufba.br: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Repositório InstitucionalPUBhttp://192.188.11.11:8080/oai/requestopendoar:19322022-07-05T17:03:49Repositório Institucional da UFBA - Universidade Federal da Bahia (UFBA)false
dc.title.pt_BR.fl_str_mv Stochastic strategy to analyze protein folding
dc.title.alternative.pt_BR.fl_str_mv Physica A: Statistical Mechanics and its Applications
title Stochastic strategy to analyze protein folding
spellingShingle Stochastic strategy to analyze protein folding
Nogueira Júnior, E.
Secondary structure folding
Tsallis statistics
Generalized Simulated Annealing
title_short Stochastic strategy to analyze protein folding
title_full Stochastic strategy to analyze protein folding
title_fullStr Stochastic strategy to analyze protein folding
title_full_unstemmed Stochastic strategy to analyze protein folding
title_sort Stochastic strategy to analyze protein folding
author Nogueira Júnior, E.
author_facet Nogueira Júnior, E.
Moret, M. A.
Bisch, Paulo Mascarello
Pascutti, P. G.
author_role author
author2 Moret, M. A.
Bisch, Paulo Mascarello
Pascutti, P. G.
author2_role author
author
author
dc.contributor.author.fl_str_mv Nogueira Júnior, E.
Moret, M. A.
Bisch, Paulo Mascarello
Pascutti, P. G.
Nogueira Júnior, E.
Moret, M. A.
Bisch, Paulo Mascarello
Pascutti, P. G.
dc.subject.por.fl_str_mv Secondary structure folding
Tsallis statistics
Generalized Simulated Annealing
topic Secondary structure folding
Tsallis statistics
Generalized Simulated Annealing
description Texto completo: acesso restrito. p.353–364
publishDate 2005
dc.date.issued.fl_str_mv 2005
dc.date.accessioned.fl_str_mv 2013-11-13T17:28:13Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufba.br/ri/handle/ri/13633
dc.identifier.issn.none.fl_str_mv 0378-4371
dc.identifier.number.pt_BR.fl_str_mv v. 353, n. 1
identifier_str_mv 0378-4371
v. 353, n. 1
url http://repositorio.ufba.br/ri/handle/ri/13633
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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