Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV
Autor(a) principal: | |
---|---|
Data de Publicação: | 2024 |
Tipo de documento: | Tese |
Idioma: | por |
Título da fonte: | Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) |
Texto Completo: | http://repositorio.ufes.br/handle/10/17728 |
Resumo: | Papaya blight is a disease caused by a virus that can lead to a loss of productivity in Carica papaya orchards in producing countries such as Brazil, Mexico, Ecuador and Australia where the disease occurs. Infection of the plant causes burning of the tips of young leaves, spontaneous exudation of latex and spots on the fruit. The latex oxidizes in the presence of air, giving rise to a "honey-like" appearance, which together with other factors interferes with the commercial acceptance of the fruit. However, the vector that transmits the papaya late blight disease is still unknown in all producing countries. Studies carried out by various research groups have pointed to the leafhopper as a potential disseminator of the disease, in addition to the relationship with fungi, seeds and mechanical transmission. In Brazil, it is caused by the viral complex papaya meleira virus (PMeV) and papaya meleira virus 2 (PMeV2), and the coexistence of the two viruses has proven that PMeV2 is encapsidated by PMeV, and it is known that PMeV has two ORFs responsible for encoding structural proteins that make up the capsid (ORF1) and a putative RdRp protein (ORF2). Knowing that the structural proteins of PMeV are responsible for encapsidating the two genetic materials, the use of the expression of a recombinant protein fraction of the capsid protein (CP) of PMeV could become viable in the development of rapid tests, identification of viral particles in different locations of the plant and potential application in studies of virus-plant-vector transmission. In this study, we developed material on understanding the viral transmission of the papaya meleira virus complex by insects using the available literature and the prospecting and characterization of a fraction (p441) of the PMeV structural protein. The p441 fraction of the PMeV capsid protein was expressed in E. coli BL21(DE3) and extracted from the SDS-PAGE gel. The protein fraction was expressed at four different times (30 minutes, 1 hour, 2 hours and 4 hours) to check which would correspond to its highest production and its extracted fraction was used to produce polyclonal antibodies. Based on the available sequence, an in silico characterization was carried out to determine ab initio secondary and tertiary structure models, physicochemical parameters and the prediction of immunogenic peptides that could be identified in its primary sequence. The results obtained open up possibilities for the design of tests that are effective in detecting PMeV, based on observations made about the protein structure of the p441 fraction as being a stable protein with low thermal mobility. In addition, 18 peptides found on its surface have been shown to be capable of triggering an immune response and to be a region that can be used to produce antibodies that can be applied in future studies to locate the virus in different parts of the plant. Finally, it was found that the conditions of expression in a time of 4 hours obtained the best response, generating protein concentrations of around 633 to 923 mg/mL verified after SDS-PAGE gel extraction |
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Co-orientador1https://orcid.org/http://lattes.cnpq.br/Co-orientador2https://orcid.org/http://lattes.cnpq.br/Co-orientador3https://orcid.org/http://lattes.cnpq.br/Co-orientador4ID do co-orientador4Lattes do co-orientador4Orientador1https://orcid.org/http://lattes.cnpq.br/Orientador2https://orcid.org/http://lattes.cnpq.br/Almeida, Joellington Marinho dehttps://orcid.org/http://lattes.cnpq.br/1º membro da bancahttps://orcid.org/http://lattes.cnpq.br/2º membro da bancahttps://orcid.org/http://lattes.cnpq.br/3º membro da bancahttps://orcid.org/http://lattes.cnpq.br/4º membro da bancahttp://lattes.cnpq.br/5º membro da bancahttps://orcid.org/http://lattes.cnpq.br/6º membro da bancahttps://orcid.org/http://lattes.cnpq.br/7º membro da bancahttps://orcid.org/http://lattes.cnpq.br/2024-09-12T19:45:22Z2024-09-12T19:45:22Z2024-05-06Papaya blight is a disease caused by a virus that can lead to a loss of productivity in Carica papaya orchards in producing countries such as Brazil, Mexico, Ecuador and Australia where the disease occurs. Infection of the plant causes burning of the tips of young leaves, spontaneous exudation of latex and spots on the fruit. The latex oxidizes in the presence of air, giving rise to a "honey-like" appearance, which together with other factors interferes with the commercial acceptance of the fruit. However, the vector that transmits the papaya late blight disease is still unknown in all producing countries. Studies carried out by various research groups have pointed to the leafhopper as a potential disseminator of the disease, in addition to the relationship with fungi, seeds and mechanical transmission. In Brazil, it is caused by the viral complex papaya meleira virus (PMeV) and papaya meleira virus 2 (PMeV2), and the coexistence of the two viruses has proven that PMeV2 is encapsidated by PMeV, and it is known that PMeV has two ORFs responsible for encoding structural proteins that make up the capsid (ORF1) and a putative RdRp protein (ORF2). Knowing that the structural proteins of PMeV are responsible for encapsidating the two genetic materials, the use of the expression of a recombinant protein fraction of the capsid protein (CP) of PMeV could become viable in the development of rapid tests, identification of viral particles in different locations of the plant and potential application in studies of virus-plant-vector transmission. In this study, we developed material on understanding the viral transmission of the papaya meleira virus complex by insects using the available literature and the prospecting and characterization of a fraction (p441) of the PMeV structural protein. The p441 fraction of the PMeV capsid protein was expressed in E. coli BL21(DE3) and extracted from the SDS-PAGE gel. The protein fraction was expressed at four different times (30 minutes, 1 hour, 2 hours and 4 hours) to check which would correspond to its highest production and its extracted fraction was used to produce polyclonal antibodies. Based on the available sequence, an in silico characterization was carried out to determine ab initio secondary and tertiary structure models, physicochemical parameters and the prediction of immunogenic peptides that could be identified in its primary sequence. The results obtained open up possibilities for the design of tests that are effective in detecting PMeV, based on observations made about the protein structure of the p441 fraction as being a stable protein with low thermal mobility. In addition, 18 peptides found on its surface have been shown to be capable of triggering an immune response and to be a region that can be used to produce antibodies that can be applied in future studies to locate the virus in different parts of the plant. Finally, it was found that the conditions of expression in a time of 4 hours obtained the best response, generating protein concentrations of around 633 to 923 mg/mL verified after SDS-PAGE gel extractionresumoCNPqTexthttp://repositorio.ufes.br/handle/10/17728porptUniversidade Federal do Espírito SantoDoutorado em BiotecnologiaPrograma de Pós-Graduação em BiotecnologiaUFESBRCentro de Ciências da Saúdeopen access, restricted access ou embargoed accessinfo:eu-repo/semantics/openAccessBiotecnologiaPalavra-chaveTransmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeVTransmission by insects of the papaya meleira virus COMPLEX (PMeV and PMeV2) and prospection and characterization of a faction of the structural protein of PMeVinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESemail@ufes.brORIGINALJoellingtonMarinhodeAlmeida-2024-tese.pdfJoellingtonMarinhodeAlmeida-2024-tese.pdfapplication/pdf3337523http://repositorio.ufes.br/bitstreams/d040f721-84df-481a-bb3e-050e5b15e0c0/downloadc9b0a462a7beb8f832ce2bdf22774d75MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufes.br/bitstreams/04cea7c3-5316-4d0a-b10b-d8b7e450e2de/download8a4605be74aa9ea9d79846c1fba20a33MD5210/177282024-09-12 16:45:54.345oai:repositorio.ufes.br:10/17728http://repositorio.ufes.brRepositório InstitucionalPUBhttp://repositorio.ufes.br/oai/requestopendoar:21082024-10-15T18:01:11.409258Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)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 |
dc.title.none.fl_str_mv |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
dc.title.alternative.none.fl_str_mv |
Transmission by insects of the papaya meleira virus COMPLEX (PMeV and PMeV2) and prospection and characterization of a faction of the structural protein of PMeV |
title |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
spellingShingle |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV Almeida, Joellington Marinho de Biotecnologia Palavra-chave |
title_short |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
title_full |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
title_fullStr |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
title_full_unstemmed |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
title_sort |
Transmissão por insetos do complexo papaya meleira virus (PMeV e PMeV2) e prospecção e caracterização de uma fração da proteína estrutural do PMeV |
author |
Almeida, Joellington Marinho de |
author_facet |
Almeida, Joellington Marinho de |
author_role |
author |
dc.contributor.advisor-co3.none.fl_str_mv |
Co-orientador3 |
dc.contributor.advisor-co3ID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.advisor-co3Lattes.none.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.advisor-co4.none.fl_str_mv |
Co-orientador4 |
dc.contributor.advisor-co4ID.none.fl_str_mv |
ID do co-orientador4 |
dc.contributor.advisor-co4Lattes.none.fl_str_mv |
Lattes do co-orientador4 |
dc.contributor.advisor2ID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.authorID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.authorLattes.none.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee6.none.fl_str_mv |
6º membro da banca |
dc.contributor.referee6ID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee6Lattes.none.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee7.none.fl_str_mv |
7º membro da banca |
dc.contributor.referee7ID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee7Lattes.none.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.advisor-co1.fl_str_mv |
Co-orientador1 |
dc.contributor.advisor-co1ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.advisor-co2.fl_str_mv |
Co-orientador2 |
dc.contributor.advisor-co2ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.advisor-co2Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.advisor1.fl_str_mv |
Orientador1 |
dc.contributor.advisor1ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.advisor2.fl_str_mv |
Orientador2 |
dc.contributor.advisor2Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.author.fl_str_mv |
Almeida, Joellington Marinho de |
dc.contributor.referee1.fl_str_mv |
1º membro da banca |
dc.contributor.referee1ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee1Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee2.fl_str_mv |
2º membro da banca |
dc.contributor.referee2ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee2Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee3.fl_str_mv |
3º membro da banca |
dc.contributor.referee3ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee3Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee4.fl_str_mv |
4º membro da banca |
dc.contributor.referee4Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
dc.contributor.referee5.fl_str_mv |
5º membro da banca |
dc.contributor.referee5ID.fl_str_mv |
https://orcid.org/ |
dc.contributor.referee5Lattes.fl_str_mv |
http://lattes.cnpq.br/ |
contributor_str_mv |
Co-orientador1 Co-orientador2 Orientador1 Orientador2 1º membro da banca 2º membro da banca 3º membro da banca 4º membro da banca 5º membro da banca |
dc.subject.cnpq.fl_str_mv |
Biotecnologia |
topic |
Biotecnologia Palavra-chave |
dc.subject.por.fl_str_mv |
Palavra-chave |
description |
Papaya blight is a disease caused by a virus that can lead to a loss of productivity in Carica papaya orchards in producing countries such as Brazil, Mexico, Ecuador and Australia where the disease occurs. Infection of the plant causes burning of the tips of young leaves, spontaneous exudation of latex and spots on the fruit. The latex oxidizes in the presence of air, giving rise to a "honey-like" appearance, which together with other factors interferes with the commercial acceptance of the fruit. However, the vector that transmits the papaya late blight disease is still unknown in all producing countries. Studies carried out by various research groups have pointed to the leafhopper as a potential disseminator of the disease, in addition to the relationship with fungi, seeds and mechanical transmission. In Brazil, it is caused by the viral complex papaya meleira virus (PMeV) and papaya meleira virus 2 (PMeV2), and the coexistence of the two viruses has proven that PMeV2 is encapsidated by PMeV, and it is known that PMeV has two ORFs responsible for encoding structural proteins that make up the capsid (ORF1) and a putative RdRp protein (ORF2). Knowing that the structural proteins of PMeV are responsible for encapsidating the two genetic materials, the use of the expression of a recombinant protein fraction of the capsid protein (CP) of PMeV could become viable in the development of rapid tests, identification of viral particles in different locations of the plant and potential application in studies of virus-plant-vector transmission. In this study, we developed material on understanding the viral transmission of the papaya meleira virus complex by insects using the available literature and the prospecting and characterization of a fraction (p441) of the PMeV structural protein. The p441 fraction of the PMeV capsid protein was expressed in E. coli BL21(DE3) and extracted from the SDS-PAGE gel. The protein fraction was expressed at four different times (30 minutes, 1 hour, 2 hours and 4 hours) to check which would correspond to its highest production and its extracted fraction was used to produce polyclonal antibodies. Based on the available sequence, an in silico characterization was carried out to determine ab initio secondary and tertiary structure models, physicochemical parameters and the prediction of immunogenic peptides that could be identified in its primary sequence. The results obtained open up possibilities for the design of tests that are effective in detecting PMeV, based on observations made about the protein structure of the p441 fraction as being a stable protein with low thermal mobility. In addition, 18 peptides found on its surface have been shown to be capable of triggering an immune response and to be a region that can be used to produce antibodies that can be applied in future studies to locate the virus in different parts of the plant. Finally, it was found that the conditions of expression in a time of 4 hours obtained the best response, generating protein concentrations of around 633 to 923 mg/mL verified after SDS-PAGE gel extraction |
publishDate |
2024 |
dc.date.accessioned.fl_str_mv |
2024-09-12T19:45:22Z |
dc.date.available.fl_str_mv |
2024-09-12T19:45:22Z |
dc.date.issued.fl_str_mv |
2024-05-06 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/doctoralThesis |
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doctoralThesis |
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dc.identifier.uri.fl_str_mv |
http://repositorio.ufes.br/handle/10/17728 |
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http://repositorio.ufes.br/handle/10/17728 |
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por |
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open access, restricted access ou embargoed access |
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openAccess |
dc.format.none.fl_str_mv |
Text |
dc.publisher.none.fl_str_mv |
Universidade Federal do Espírito Santo Doutorado em Biotecnologia |
dc.publisher.program.fl_str_mv |
Programa de Pós-Graduação em Biotecnologia |
dc.publisher.initials.fl_str_mv |
UFES |
dc.publisher.country.fl_str_mv |
BR |
dc.publisher.department.fl_str_mv |
Centro de Ciências da Saúde |
publisher.none.fl_str_mv |
Universidade Federal do Espírito Santo Doutorado em Biotecnologia |
dc.source.none.fl_str_mv |
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