Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo

Detalhes bibliográficos
Autor(a) principal: Vianna, Larissa Souza
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
Texto Completo: http://repositorio.ufes.br/handle/10/5119
Resumo: Vochysia bifalcata is popularly known as Guaricica, is a tree neotropical species whose survival is threatened due to degradation processes of the natural environment and man operation, considered the threat of state they are in, it is necessary to obtain more detailed information the genetic diversity of natural populations of this species, which is possible from studies with microsatellite markers. In this context, the present study was to evaluate objetvo the genetic diversity of Vochysia bifalcata species and characterize soil fertility in two native populations established in Caparaó National Park, ES. Therefore, leaf samples from 28 adult individuals were collected from two native populations of V. bifalta. For transferability test were tested 8 microsatellite primers developed for Qualea grandiflora and 10 designed to Vochysia ferruginea in the genome of individuals to V. bifalcata. Total genomic DNA was isolated using the Doyle & Doyle protocol (1990) modified. The amplified fragments were separated by electrophoresis on gel polyacrylamide 10% with 1X TBE buffer. Electrophoresis was performed at constant voltage of 100 W for 5 hours. The markers that generate satisfactory amplifications were then used for the studies and genetic diversity of structure in all 28 individuals sampled. We randomly selected six soil sampling points in each population at depths 0-5; 5-10 e 10-20 cm and chemical analyzes were performed using the methodology proposed by EMBRAPA (1997). The heterologous amplification results for V. ferruginea to V. bifalcata were satisfactory, and then used for statistical analysis and Q. grandiflora for V. bifalcata were satisfactory, however proved to be monomorphic. For starters, V. ferruginea the results showed the average occurrence of 4.85 lleles/locus. In both two populations of seven loci analyzed suggested the presence of null alleles, with significant frequency. The allelic richness were similar between the two populations. The average observed heterozygosity for the population I was 0.434 and population II was 0.355, both distinct from the expected to the Hardy-Weinberg equilibrium. The average fixation index for the population I was 0.390 and the population II was 0.328, indicating the presence of inbreeding within populations. The average value of Polymorphic Information Content (PIC) was 0.608 for the population I and 0.566 for the population II and are considered highly informative. The pair of genotypes (9 and 11) and (5 and 9) were identified as the least dissimilar opulations the population I and II, respectively. The amount of GST (0.079) indicated a moderate genetic differentiation among populations. To AMOVA, 92.86% of the variation was within 12 populations and among populations 7.13%. After analyzing the program, STRUCTURE was possible to define the division into two groups of genotypes. The obtained average gene flow was 2.88 being considered high enough to counteract the effects of genetic drift. These data generate important information about the genetic variability, proving the importance of Caparaó National Park for the species conservation. Soil samples analyzed demonstrated that the fertility of both populations are present and a low acidity, the homogeneity of the soil fertility can be explained by the soil and climatic characteristics similar between the two study populations.
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spelling Miranda, Fábio Demolinari deCaldeira, Marcos Vinicius WincklerVianna, Larissa SouzaKunz, Sustanis Horn2016-08-29T15:37:34Z2016-07-112016-08-29T15:37:34Z2015-02-26Vochysia bifalcata is popularly known as Guaricica, is a tree neotropical species whose survival is threatened due to degradation processes of the natural environment and man operation, considered the threat of state they are in, it is necessary to obtain more detailed information the genetic diversity of natural populations of this species, which is possible from studies with microsatellite markers. In this context, the present study was to evaluate objetvo the genetic diversity of Vochysia bifalcata species and characterize soil fertility in two native populations established in Caparaó National Park, ES. Therefore, leaf samples from 28 adult individuals were collected from two native populations of V. bifalta. For transferability test were tested 8 microsatellite primers developed for Qualea grandiflora and 10 designed to Vochysia ferruginea in the genome of individuals to V. bifalcata. Total genomic DNA was isolated using the Doyle & Doyle protocol (1990) modified. The amplified fragments were separated by electrophoresis on gel polyacrylamide 10% with 1X TBE buffer. Electrophoresis was performed at constant voltage of 100 W for 5 hours. The markers that generate satisfactory amplifications were then used for the studies and genetic diversity of structure in all 28 individuals sampled. We randomly selected six soil sampling points in each population at depths 0-5; 5-10 e 10-20 cm and chemical analyzes were performed using the methodology proposed by EMBRAPA (1997). The heterologous amplification results for V. ferruginea to V. bifalcata were satisfactory, and then used for statistical analysis and Q. grandiflora for V. bifalcata were satisfactory, however proved to be monomorphic. For starters, V. ferruginea the results showed the average occurrence of 4.85 lleles/locus. In both two populations of seven loci analyzed suggested the presence of null alleles, with significant frequency. The allelic richness were similar between the two populations. The average observed heterozygosity for the population I was 0.434 and population II was 0.355, both distinct from the expected to the Hardy-Weinberg equilibrium. The average fixation index for the population I was 0.390 and the population II was 0.328, indicating the presence of inbreeding within populations. The average value of Polymorphic Information Content (PIC) was 0.608 for the population I and 0.566 for the population II and are considered highly informative. The pair of genotypes (9 and 11) and (5 and 9) were identified as the least dissimilar opulations the population I and II, respectively. The amount of GST (0.079) indicated a moderate genetic differentiation among populations. To AMOVA, 92.86% of the variation was within 12 populations and among populations 7.13%. After analyzing the program, STRUCTURE was possible to define the division into two groups of genotypes. The obtained average gene flow was 2.88 being considered high enough to counteract the effects of genetic drift. These data generate important information about the genetic variability, proving the importance of Caparaó National Park for the species conservation. Soil samples analyzed demonstrated that the fertility of both populations are present and a low acidity, the homogeneity of the soil fertility can be explained by the soil and climatic characteristics similar between the two study populations.Vochysia bifalcata é conhecida popularmente como Guaricica, é uma espécie arbórea neotropical cuja sobrevivência encontra-se ameaçada devido aos processos de degradação de seus ambientes naturais e exploração antrópica, considerado o estado de ameaça em que se encontram, faz-se necessário obter informações mais detalhadas sobre a diversidade genética de populações naturais desta espécie, o que é possível a partir de estudos com marcadores microssatélites. Neste contexto, o objetvo do presente estudo foi avaliar a diversidade genética da espécie Vochysia bifalcata em duas populações nativas estabelecidas no Parque Nacional do Caparaó, ES, bem como, caracterizar a fertilidade do solo. Para tanto, foram coletadas amostras foliares de 28 individuos adultos em ambas populações, os testes de transferifilidades foram realizados utilizando 8 primers microssatélites desenvolvidos para Qualea grandiflora e 10 desenvolvidos para Vochysia ferrugínea no genoma dos indivíduos de Vochysia bifalcata. Os marcadores que geraram amplificações satisfatórias foram utilizados para os estudos de diversidade e estrutura genética em todos os 28 indivíduos amostrados. Para a caracterização dos atributos químicos do solo, foram selecionados aleatoriamente seis pontos de amostragem de solos em cada população, nas camadas de 0 – 5; 5 – 10 e 10 – 20 cm. Os resultados de amplificação heteróloga de Vochysia ferruginea para V.bifalcata foram satisfatórios, sendo utilizados para as análises estatísticas e de Qualea grandiflora para V. bifalcata foram satisfatórios, entretanto se mostraram monomórficos. Para os iniciadores de V. ferruginea os resultados mostraram a ocorrência média de 4,85 alelos/loco. Dois dos sete locos analisados evidenciaram a presença de alelos nulos, com frequência significativa. Os valores de riqueza alélica foram similares entre as duas populações. O valor médio de heterozigosidade observada para a população I foi 0,434 e para população II foi 0,355, ambos distintos do esperado para o equilíbrio de Hardy-Weinberg. O índice de fixação médio para a população I foi de 0,390 e para a população II de 0,328, indicando presença de endogamia nas populações. O valor médio do Conteúdo de Informação Polimórfica (PIC) foi de 0,608 para a população I e 0,566 para a população II, sendo considerados altamente informativos. O par de genótipos (9 e 11) e (5 e 9) foram identificados como os menos dissimilares na população I e população II, respectivamente. O valor de GST (0,079), indicou uma diferenciação genética moderada entre as populações. Para AMOVA, 92,86% da variação foram dentro de populações e 7,13% entre populações. Com a análise bayesiana foi possível definir a divisão dos genótipos em dois grupos. O fluxo gênico médio obtido foi de 2,88 sendo considerado alto o suficiente para contrapor os efeitos da deriva genética. Os parâmetros genéticos obtidos geraram informações sobre a variabilidade genética existente, comprovando a importância do Parque Nacional do Caparaó para fins conservacionistas. As amostras de solos analisadas evidenciaram que a fertilidade de ambas populações apresenta-se baixas e com uma acidez elevadaTextVIANNA, Larissa Souza. Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo. 2015. 91 f. Dissertação (Mestrado em Genética e Melhoramento) - Programa de Pós-Graduação em Genética e Melhoramento, Universidade Federal do Espírito Santo, Alegre, 2015.http://repositorio.ufes.br/handle/10/5119porUniversidade Federal do Espírito SantoMestrado em Genética e MelhoramentoPrograma de Pós-Graduação em Genética e MelhoramentoUFESBRGenetic diversityMolecular markers.Rain Forest MontanaSoil fertilityDiversidade genéticaFloresta ombrófila densa montanaMarcadores molecularesGenética vegetalMoléculasSolos - FertilidadeMelhoramento Vegetal63Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESORIGINALtese_8344_Dissertação Final Larissa Vianna.pdfapplication/pdf1816030http://repositorio.ufes.br/bitstreams/d6863659-32aa-4f98-ad2b-ddc603195bc0/downloaddb630057efda6e596abefc0d380531faMD51TEXTtese_8344_Dissertação Final Larissa Vianna.pdf.txttese_8344_Dissertação Final Larissa Vianna.pdf.txtExtracted texttext/plain174202http://repositorio.ufes.br/bitstreams/c8e9d120-8513-46fb-b194-8666598465ec/download592803c60d3499b95ebf0ef17a13a969MD5210/51192024-06-24 10:17:35.092oai:repositorio.ufes.br:10/5119http://repositorio.ufes.brRepositório InstitucionalPUBhttp://repositorio.ufes.br/oai/requestopendoar:21082024-07-11T14:33:16.400913Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)false
dc.title.none.fl_str_mv Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
title Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
spellingShingle Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
Vianna, Larissa Souza
Genetic diversity
Molecular markers.
Rain Forest Montana
Soil fertility
Diversidade genética
Floresta ombrófila densa montana
Marcadores moleculares
Melhoramento Vegetal
Genética vegetal
Moléculas
Solos - Fertilidade
63
title_short Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
title_full Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
title_fullStr Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
title_full_unstemmed Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
title_sort Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo
author Vianna, Larissa Souza
author_facet Vianna, Larissa Souza
author_role author
dc.contributor.advisor-co1.fl_str_mv Miranda, Fábio Demolinari de
dc.contributor.advisor1.fl_str_mv Caldeira, Marcos Vinicius Winckler
dc.contributor.author.fl_str_mv Vianna, Larissa Souza
dc.contributor.referee1.fl_str_mv Kunz, Sustanis Horn
contributor_str_mv Miranda, Fábio Demolinari de
Caldeira, Marcos Vinicius Winckler
Kunz, Sustanis Horn
dc.subject.eng.fl_str_mv Genetic diversity
Molecular markers.
Rain Forest Montana
Soil fertility
topic Genetic diversity
Molecular markers.
Rain Forest Montana
Soil fertility
Diversidade genética
Floresta ombrófila densa montana
Marcadores moleculares
Melhoramento Vegetal
Genética vegetal
Moléculas
Solos - Fertilidade
63
dc.subject.por.fl_str_mv Diversidade genética
Floresta ombrófila densa montana
Marcadores moleculares
dc.subject.cnpq.fl_str_mv Melhoramento Vegetal
dc.subject.br-rjbn.none.fl_str_mv Genética vegetal
Moléculas
Solos - Fertilidade
dc.subject.udc.none.fl_str_mv 63
description Vochysia bifalcata is popularly known as Guaricica, is a tree neotropical species whose survival is threatened due to degradation processes of the natural environment and man operation, considered the threat of state they are in, it is necessary to obtain more detailed information the genetic diversity of natural populations of this species, which is possible from studies with microsatellite markers. In this context, the present study was to evaluate objetvo the genetic diversity of Vochysia bifalcata species and characterize soil fertility in two native populations established in Caparaó National Park, ES. Therefore, leaf samples from 28 adult individuals were collected from two native populations of V. bifalta. For transferability test were tested 8 microsatellite primers developed for Qualea grandiflora and 10 designed to Vochysia ferruginea in the genome of individuals to V. bifalcata. Total genomic DNA was isolated using the Doyle & Doyle protocol (1990) modified. The amplified fragments were separated by electrophoresis on gel polyacrylamide 10% with 1X TBE buffer. Electrophoresis was performed at constant voltage of 100 W for 5 hours. The markers that generate satisfactory amplifications were then used for the studies and genetic diversity of structure in all 28 individuals sampled. We randomly selected six soil sampling points in each population at depths 0-5; 5-10 e 10-20 cm and chemical analyzes were performed using the methodology proposed by EMBRAPA (1997). The heterologous amplification results for V. ferruginea to V. bifalcata were satisfactory, and then used for statistical analysis and Q. grandiflora for V. bifalcata were satisfactory, however proved to be monomorphic. For starters, V. ferruginea the results showed the average occurrence of 4.85 lleles/locus. In both two populations of seven loci analyzed suggested the presence of null alleles, with significant frequency. The allelic richness were similar between the two populations. The average observed heterozygosity for the population I was 0.434 and population II was 0.355, both distinct from the expected to the Hardy-Weinberg equilibrium. The average fixation index for the population I was 0.390 and the population II was 0.328, indicating the presence of inbreeding within populations. The average value of Polymorphic Information Content (PIC) was 0.608 for the population I and 0.566 for the population II and are considered highly informative. The pair of genotypes (9 and 11) and (5 and 9) were identified as the least dissimilar opulations the population I and II, respectively. The amount of GST (0.079) indicated a moderate genetic differentiation among populations. To AMOVA, 92.86% of the variation was within 12 populations and among populations 7.13%. After analyzing the program, STRUCTURE was possible to define the division into two groups of genotypes. The obtained average gene flow was 2.88 being considered high enough to counteract the effects of genetic drift. These data generate important information about the genetic variability, proving the importance of Caparaó National Park for the species conservation. Soil samples analyzed demonstrated that the fertility of both populations are present and a low acidity, the homogeneity of the soil fertility can be explained by the soil and climatic characteristics similar between the two study populations.
publishDate 2015
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dc.identifier.citation.fl_str_mv VIANNA, Larissa Souza. Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo. 2015. 91 f. Dissertação (Mestrado em Genética e Melhoramento) - Programa de Pós-Graduação em Genética e Melhoramento, Universidade Federal do Espírito Santo, Alegre, 2015.
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identifier_str_mv VIANNA, Larissa Souza. Caracterização genética e do solo em populações nativas de Vochysia bifalcata warm. no Espírito Santo. 2015. 91 f. Dissertação (Mestrado em Genética e Melhoramento) - Programa de Pós-Graduação em Genética e Melhoramento, Universidade Federal do Espírito Santo, Alegre, 2015.
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