Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors

Detalhes bibliográficos
Autor(a) principal: Oliveira, Stéfanie Cristina de
Data de Publicação: 2017
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
Texto Completo: http://repositorio.ufes.br/handle/10/6950
Resumo: Among the Coffea, there is a natural hybrid denominated “Híbrido de Timor” (HT), found on Timor Island in 1927. HT 'CIFC 4106', which represents the first HT plant, possesses 2n = 3x = 33 chromosomes and 1C DNA value equal 1C = 2.10 pg. Chromosomal number, nuclear 1C DNA content and geographical evidences support a possible allotriploid origin from fusion of a reduced reproductive cell of Coffea arabica (2n = 4x = 44) and Coffea canephora (2n = 2x = 22). C. arabica, another allopolyploid, accumulates studies that seek to unravel its progenitors. Molecular and karyotype data suggests that this true allotetraploid was formed from a reduced reproductive cell of C. canephora (CC) and another C. eugenioides (EE) followed by a polyploidization event. In this way, C. arabica genome is represented as C aC a E a E a . Based on this evidences, we formulate the following hypothesis: HT ‘CIFC 4106’ genome is CCa E a ? The present study aimed to cytogenetically characterize C. eugenioides, C. canephora, C. arabica and HT 'CIFC 4106'. The combination of morphometric data, flow and image cytometries and 5S rDNA fluorescente in situ hybridization (FISH) expanded knowledge about the evolutive origin and genome structure of HT ‘CIFC 4106’. HT 'CIFC 4106' karyogram evidenced chromosomes group delimited according to the class and DNA value similar. Based on these karyotype features was possible show the presence of two identical genomes in HT 'CIFC 4106', possibly of C. canephora (CC) and a distinct genome (C. eugenioides, E). HT 'CIFC 4106' chromosomes presented class, DNA content identical to the chromosomes of C. eugenioides, C. canephora and C. arabica. 5S rDNA sites were detected in two HT ‘CIFC 4106’ chromosomes. Distribution patterns of 5S markings found in C. eugenioides and C. canephora revealed in this study corroborate with HT ‘CIFC 4106’ CCa E a genome hypothesis. The 15 distribution of the 5S rDNA sites found in three Coffea allied to the chromosomal DNA content and class shows chromosomes similar to C. eugenioides and C. canephora in HT ‘CIFC 4106’. In addition, the data reveal possible structural chromosomal rearrangements along the evolution of HT ‘CIFC 4106’
id UFES_825bbc39035c4f3043894bdb0affdbda
oai_identifier_str oai:repositorio.ufes.br:10/6950
network_acronym_str UFES
network_name_str Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
repository_id_str 2108
spelling 60Fontes, Milene Miranda Praçahttps://orcid.org/0000-0001-7738-9518http://lattes.cnpq.br/1372644511398549Soares, Fernanda Aparecida Ferrarihttps://orcid.org/0000-0002-7198-1577http://lattes.cnpq.br/5855273025512026Clarindo, Wellington Ronildohttps://orcid.org/0000-0002-8826-8620http://lattes.cnpq.br/0339970047422716Oliveira, Stéfanie Cristina dehttps://orcid.org/0000-0001-8350-2601http://lattes.cnpq.br/6404885772178652Karsburg, Isane Verahttps://orcid.org/0000-0002-9637-0449http://lattes.cnpq.br/4736928411585458Carvalho, Guilherme Mendes de Almeidahttps://orcid.org/0009-0003-2724-1955http://lattes.cnpq.br/81430111237948682018-03-22T15:59:43Z2018-02-212018-03-22T15:59:43Z2017-12-21Among the Coffea, there is a natural hybrid denominated “Híbrido de Timor” (HT), found on Timor Island in 1927. HT 'CIFC 4106', which represents the first HT plant, possesses 2n = 3x = 33 chromosomes and 1C DNA value equal 1C = 2.10 pg. Chromosomal number, nuclear 1C DNA content and geographical evidences support a possible allotriploid origin from fusion of a reduced reproductive cell of Coffea arabica (2n = 4x = 44) and Coffea canephora (2n = 2x = 22). C. arabica, another allopolyploid, accumulates studies that seek to unravel its progenitors. Molecular and karyotype data suggests that this true allotetraploid was formed from a reduced reproductive cell of C. canephora (CC) and another C. eugenioides (EE) followed by a polyploidization event. In this way, C. arabica genome is represented as C aC a E a E a . Based on this evidences, we formulate the following hypothesis: HT ‘CIFC 4106’ genome is CCa E a ? The present study aimed to cytogenetically characterize C. eugenioides, C. canephora, C. arabica and HT 'CIFC 4106'. The combination of morphometric data, flow and image cytometries and 5S rDNA fluorescente in situ hybridization (FISH) expanded knowledge about the evolutive origin and genome structure of HT ‘CIFC 4106’. HT 'CIFC 4106' karyogram evidenced chromosomes group delimited according to the class and DNA value similar. Based on these karyotype features was possible show the presence of two identical genomes in HT 'CIFC 4106', possibly of C. canephora (CC) and a distinct genome (C. eugenioides, E). HT 'CIFC 4106' chromosomes presented class, DNA content identical to the chromosomes of C. eugenioides, C. canephora and C. arabica. 5S rDNA sites were detected in two HT ‘CIFC 4106’ chromosomes. Distribution patterns of 5S markings found in C. eugenioides and C. canephora revealed in this study corroborate with HT ‘CIFC 4106’ CCa E a genome hypothesis. The 15 distribution of the 5S rDNA sites found in three Coffea allied to the chromosomal DNA content and class shows chromosomes similar to C. eugenioides and C. canephora in HT ‘CIFC 4106’. In addition, the data reveal possible structural chromosomal rearrangements along the evolution of HT ‘CIFC 4106’Entre as espécies Coffea, existe um híbrido natural denominado "Híbrido de Timor" (HT), encontrado na Ilha de Timor em 1927. HT 'CIFC 4106', o qual representa a primeira planta, possui 2n = 3x = 33 cromossomos e valor 1C DNA igual a 1C = 2.10 pg. O número cromossômico, o conteúdo de DNA e evidências geográficas, suportam uma possível origem alotriploide a partir da fusão de uma célula reprodutiva reduzida de Coffea arabica (2n = 4x = 44) com outra célula, também reduzida, de Coffea canephora (2n = 2x = 22). C. arabica, outro alopoliploide pertencente ao gênero, acumula estudos que buscam desvendar seus progenitores. Dados moleculares e cariotípicos sugerem que este alotetraploide verdadeiro seja formado a partir de uma célula reprodutiva reduzida de C. canephora (CC) e C. eugenioides (EE), seguido por um evento de poliploidização. Neste sentido, acredita-se que o genoma de C. arabica seja representado como CaCaEaEa. Com base nas evidências mencionadas, formulamos a seguinte hipótese: o genoma de HT 'CIFC 4106' é CCaEa? O presente estudo caracterizou citogenicamente C. eugenioides, C. canephora, C. arabica e HT 'CIFC 4106'. A combinação de dados morfométricos, conteúdo de DNA nuclear e cromossômico e hibridização in situ fluorescente (FISH) com rDNA 5S, expandiu o conhecimento sobre a origem evolutiva e a estrutura do genoma de HT 'CIFC 4106'. O cariograma de HT 'CIFC 4106' evidenciou pares e grupos cromossômicos delimitados de acordo com o tamanho total, classes e conteúdos de DNA cromossômicos. Com base nessas características cariotípicas, foi possível inferir a presença de dois genomas idênticos em HT 'CIFC 4106', possivelmente de C. canephora (CC) e um genoma distinto (C. eugenioides, E). Os cromossomos de HT 'CIFC 4106' apresentaram classe, conteúdo de DNA idênticos aos cromossomos de C. eugenioides, C. canephora e C.arabica. Padrões de distribuição de sinais 5S em HT 'CIFC 4106' foram similares aos encontrados nos possíveis progenitores C. eugenioides e C. canephora. Os dados revelados neste estudo corroboram com a hipótese CCaEa do genoma de HT 'CIFC 4106'.Texthttp://repositorio.ufes.br/handle/10/6950porUniversidade Federal do Espírito SantoDoutorado em Genética e MelhoramentoPrograma de Pós-Graduação em Genética e MelhoramentoUFESBRCoffeeAllopolyploidCytogeneticImage cytometryCaféAlopoliploidiaCitometria de imagemFISHCafé - TorrefaçãoCitogenéticaEvoluçãoMelhoramento Vegetal631.523Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestorsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESORIGINALStefanieCristinadeOliveira-2017-tese.pdfapplication/pdf1556297http://repositorio.ufes.br/bitstreams/ea0c5007-1f94-41a4-aa12-179bd2223954/downloade9a76ba058e80aec74bb5fddd6159037MD5110/69502024-08-20 11:33:14.676oai:repositorio.ufes.br:10/6950http://repositorio.ufes.brRepositório InstitucionalPUBhttp://repositorio.ufes.br/oai/requestopendoar:21082024-10-15T17:53:43.846339Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)false
dc.title.none.fl_str_mv Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
title Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
spellingShingle Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
Oliveira, Stéfanie Cristina de
Coffee
Allopolyploid
Cytogenetic
Image cytometry
Café
Alopoliploidia
Citometria de imagem
FISH
Melhoramento Vegetal
Café - Torrefação
Citogenética
Evolução
631.523
title_short Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
title_full Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
title_fullStr Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
title_full_unstemmed Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
title_sort Origin of the allotriploid "híbrido de timor" through a karyotype comparison with its coffea ancestors
author Oliveira, Stéfanie Cristina de
author_facet Oliveira, Stéfanie Cristina de
author_role author
dc.contributor.authorID.none.fl_str_mv https://orcid.org/0000-0001-8350-2601
dc.contributor.authorLattes.none.fl_str_mv http://lattes.cnpq.br/6404885772178652
dc.contributor.advisor-co1.fl_str_mv Fontes, Milene Miranda Praça
dc.contributor.advisor-co1ID.fl_str_mv https://orcid.org/0000-0001-7738-9518
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/1372644511398549
dc.contributor.advisor-co2.fl_str_mv Soares, Fernanda Aparecida Ferrari
dc.contributor.advisor-co2ID.fl_str_mv https://orcid.org/0000-0002-7198-1577
dc.contributor.advisor-co2Lattes.fl_str_mv http://lattes.cnpq.br/5855273025512026
dc.contributor.advisor1.fl_str_mv Clarindo, Wellington Ronildo
dc.contributor.advisor1ID.fl_str_mv https://orcid.org/0000-0002-8826-8620
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/0339970047422716
dc.contributor.author.fl_str_mv Oliveira, Stéfanie Cristina de
dc.contributor.referee1.fl_str_mv Karsburg, Isane Vera
dc.contributor.referee1ID.fl_str_mv https://orcid.org/0000-0002-9637-0449
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/4736928411585458
dc.contributor.referee2.fl_str_mv Carvalho, Guilherme Mendes de Almeida
dc.contributor.referee2ID.fl_str_mv https://orcid.org/0009-0003-2724-1955
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/8143011123794868
contributor_str_mv Fontes, Milene Miranda Praça
Soares, Fernanda Aparecida Ferrari
Clarindo, Wellington Ronildo
Karsburg, Isane Vera
Carvalho, Guilherme Mendes de Almeida
dc.subject.eng.fl_str_mv Coffee
Allopolyploid
Cytogenetic
Image cytometry
topic Coffee
Allopolyploid
Cytogenetic
Image cytometry
Café
Alopoliploidia
Citometria de imagem
FISH
Melhoramento Vegetal
Café - Torrefação
Citogenética
Evolução
631.523
dc.subject.por.fl_str_mv Café
Alopoliploidia
Citometria de imagem
FISH
dc.subject.cnpq.fl_str_mv Melhoramento Vegetal
dc.subject.br-rjbn.none.fl_str_mv Café - Torrefação
Citogenética
Evolução
dc.subject.udc.none.fl_str_mv 631.523
description Among the Coffea, there is a natural hybrid denominated “Híbrido de Timor” (HT), found on Timor Island in 1927. HT 'CIFC 4106', which represents the first HT plant, possesses 2n = 3x = 33 chromosomes and 1C DNA value equal 1C = 2.10 pg. Chromosomal number, nuclear 1C DNA content and geographical evidences support a possible allotriploid origin from fusion of a reduced reproductive cell of Coffea arabica (2n = 4x = 44) and Coffea canephora (2n = 2x = 22). C. arabica, another allopolyploid, accumulates studies that seek to unravel its progenitors. Molecular and karyotype data suggests that this true allotetraploid was formed from a reduced reproductive cell of C. canephora (CC) and another C. eugenioides (EE) followed by a polyploidization event. In this way, C. arabica genome is represented as C aC a E a E a . Based on this evidences, we formulate the following hypothesis: HT ‘CIFC 4106’ genome is CCa E a ? The present study aimed to cytogenetically characterize C. eugenioides, C. canephora, C. arabica and HT 'CIFC 4106'. The combination of morphometric data, flow and image cytometries and 5S rDNA fluorescente in situ hybridization (FISH) expanded knowledge about the evolutive origin and genome structure of HT ‘CIFC 4106’. HT 'CIFC 4106' karyogram evidenced chromosomes group delimited according to the class and DNA value similar. Based on these karyotype features was possible show the presence of two identical genomes in HT 'CIFC 4106', possibly of C. canephora (CC) and a distinct genome (C. eugenioides, E). HT 'CIFC 4106' chromosomes presented class, DNA content identical to the chromosomes of C. eugenioides, C. canephora and C. arabica. 5S rDNA sites were detected in two HT ‘CIFC 4106’ chromosomes. Distribution patterns of 5S markings found in C. eugenioides and C. canephora revealed in this study corroborate with HT ‘CIFC 4106’ CCa E a genome hypothesis. The 15 distribution of the 5S rDNA sites found in three Coffea allied to the chromosomal DNA content and class shows chromosomes similar to C. eugenioides and C. canephora in HT ‘CIFC 4106’. In addition, the data reveal possible structural chromosomal rearrangements along the evolution of HT ‘CIFC 4106’
publishDate 2017
dc.date.issued.fl_str_mv 2017-12-21
dc.date.accessioned.fl_str_mv 2018-03-22T15:59:43Z
dc.date.available.fl_str_mv 2018-02-21
2018-03-22T15:59:43Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufes.br/handle/10/6950
url http://repositorio.ufes.br/handle/10/6950
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv Text
dc.publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Genética e Melhoramento
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Genética e Melhoramento
dc.publisher.initials.fl_str_mv UFES
dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Genética e Melhoramento
dc.source.none.fl_str_mv reponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
instname:Universidade Federal do Espírito Santo (UFES)
instacron:UFES
instname_str Universidade Federal do Espírito Santo (UFES)
instacron_str UFES
institution UFES
reponame_str Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
collection Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
bitstream.url.fl_str_mv http://repositorio.ufes.br/bitstreams/ea0c5007-1f94-41a4-aa12-179bd2223954/download
bitstream.checksum.fl_str_mv e9a76ba058e80aec74bb5fddd6159037
bitstream.checksumAlgorithm.fl_str_mv MD5
repository.name.fl_str_mv Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)
repository.mail.fl_str_mv
_version_ 1813022515927187456