Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides

Detalhes bibliográficos
Autor(a) principal: Sousa, Mariana Côrtes de
Data de Publicação: 2012
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFG
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/4259
Resumo: Flavonoids are an important class of natural products candidate drugs, and low molecular weight polyphenols, widely distributed throughout the plant kingdom. Investigations on its activities over the past 30 years, demonstrated a potential to prevent several diseases, among them cardiovascular diseases, inflammatory disorders, viral infections, diabetes and neurological disorders, in addition to its known antioxidant. The family of cytochrome P450 (CYP) is composed of monooxygenases, which play a crucial role in the metabolism of endogenous and exogenous substances, and participates in the metabolism of flavonoids. In this paper we describe the application of a methodology for exploring combined in silico prediction of sites of metabolism of quercetin, rutin, naringin and naringenin, found in abundance in nature. A methodology used was ligand based drug design (LBDD) to predict the sites of metabolism (SOM) and the program MetaPrint2D most likely estimate of the metabolites, combined with the method structure based drug design (SBDD) by using molecular docking and energy minimization, to predict the interaction of quercetin, rutin, naringin and naringenin with the isoforms CYP2C9 and CYP1A2. Metabolites were found several Phase I with catalytically active distance (<5 Å) and interaction sites described in the literature, with hydroxylation reactions of aliphatic, aromatic hydroxylation, dealkylation and O-dealkylation. The proposed in silico metabolic hydroxylation at the position corresponding to the C3' were consistent with studies in vitro and in vivo experiments described in the literature for naringin and naringenin. Amino acids of the active site of CYP isoforms have been identified as important in the positioning of the flavonoids quercetin, rutin, naringin and naringenin toward the heme, confirming the involvement of these isoforms in the metabolism of flavonoids.
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spelling Andrade, Carolina Hortahttp://lattes.cnpq.br/2018317447324228Andrade, Carolina HortaSilva, Vinícius Barreto daSabino, José RicardoOliveira, Valéria deCV: http://lattes.cnpq.br/0458976053220883Sousa, Mariana Côrtes de2015-03-06T18:30:44Z2012-02-28SOUSA, M. C. Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides. 2012. 53 f. Dissertação (Mestrado em Ciências Farmacêuticas)–Universidade Federal de Goiás, Goiânia, 2012.http://repositorio.bc.ufg.br/tede/handle/tede/4259Flavonoids are an important class of natural products candidate drugs, and low molecular weight polyphenols, widely distributed throughout the plant kingdom. Investigations on its activities over the past 30 years, demonstrated a potential to prevent several diseases, among them cardiovascular diseases, inflammatory disorders, viral infections, diabetes and neurological disorders, in addition to its known antioxidant. The family of cytochrome P450 (CYP) is composed of monooxygenases, which play a crucial role in the metabolism of endogenous and exogenous substances, and participates in the metabolism of flavonoids. In this paper we describe the application of a methodology for exploring combined in silico prediction of sites of metabolism of quercetin, rutin, naringin and naringenin, found in abundance in nature. A methodology used was ligand based drug design (LBDD) to predict the sites of metabolism (SOM) and the program MetaPrint2D most likely estimate of the metabolites, combined with the method structure based drug design (SBDD) by using molecular docking and energy minimization, to predict the interaction of quercetin, rutin, naringin and naringenin with the isoforms CYP2C9 and CYP1A2. Metabolites were found several Phase I with catalytically active distance (<5 Å) and interaction sites described in the literature, with hydroxylation reactions of aliphatic, aromatic hydroxylation, dealkylation and O-dealkylation. The proposed in silico metabolic hydroxylation at the position corresponding to the C3' were consistent with studies in vitro and in vivo experiments described in the literature for naringin and naringenin. Amino acids of the active site of CYP isoforms have been identified as important in the positioning of the flavonoids quercetin, rutin, naringin and naringenin toward the heme, confirming the involvement of these isoforms in the metabolism of flavonoids.Os flavonóides representam uma importante classe de produtos naturais candidatos à fármacos, sendo polifenóis de baixo peso molecular, amplamente distribuídos no reino vegetal. Investigações sobre suas atividades, nos últimos 30 anos, demonstraram uma prevenção potencial de diversas patologias, dentre elas doenças cardiovasculares, desordens inflamatórias, infecções virais, diabetes e desordens neurológicas, além de sua conhecida ação antioxidante. A família do citocromo P450 (CYP) é composta de monooxigenases, que desempenham um papel crucial no metabolismo de substâncias endógenas e exógenas, e participa do metabolismo de flavonóides. Neste trabalho, descrevemos a aplicação de uma metodologia in silico combinada para explorar a previsão dos sítios de metabolismo dos flavonóides quercetina, rutina, naringenina e naringina, encontrados em abundância na natureza. Utilizou-se uma metodologia baseada nos ligantes (LBDD) para previsão dos sítios de metabolismo (SOM) pelo programa MetaPrint2D e previsão dos metabólitos mais prováveis, combinado à metodologia baseada na estrutura do receptor (SBDD) através da utilização de docking molecular e minimização de energia, para prever a interação de quercetina, rutina, naringenina e naringina com as isoformas CYP2C9 e CYP1A2. Foram encontrados diversos metabólitos de Fase I, com distâncias cataliticamente ativas (< 5 Å) e sítios de interação descritos na literatura, apresentando reações de hidroxilação alifática, hidroxilação aromática, desalquilação e O-desalquilação. Os metabólitos propostos in silico correspondentes à hidroxilação na posição C3’ foram com coerentes com estudos in vitro e in vivo descritos na literatura para naringenina e naringina. Aminoácidos do sítio ativo das isoformas de CYP foram identificados como importantes no posicionamento dos flavonóides quercetina, rutina, naringenina e naringina em direção ao heme, confirmando a participação dessas isoformas no metabolismo de flavonóides.Submitted by Luanna Matias (lua_matias@yahoo.com.br) on 2015-03-06T18:25:28Z No. of bitstreams: 2 Dissertação - Mariana Côrtes de Sousa - 2012.pdf: 1542160 bytes, checksum: 797a42ca723c95277c56015ce09b4be1 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Luanna Matias (lua_matias@yahoo.com.br) on 2015-03-06T18:30:44Z (GMT) No. of bitstreams: 2 Dissertação - Mariana Côrtes de Sousa - 2012.pdf: 1542160 bytes, checksum: 797a42ca723c95277c56015ce09b4be1 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2015-03-06T18:30:44Z (GMT). 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dc.title.eng.fl_str_mv Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
dc.title.alternative.eng.fl_str_mv Studies of molecular modeling to in silico prediction of probalby phase 1 metabolites of flavonoids
title Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
spellingShingle Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
Sousa, Mariana Côrtes de
Metabolismo
Flavonóides
Citocromo P450
Estudos de docking
Metabolism
Flavonoids
Cytochrome P450
Docking studies
CIENCIAS DA SAUDE::FARMACIA
title_short Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
title_full Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
title_fullStr Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
title_full_unstemmed Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
title_sort Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides
author Sousa, Mariana Côrtes de
author_facet Sousa, Mariana Côrtes de
author_role author
dc.contributor.advisor1.fl_str_mv Andrade, Carolina Horta
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/2018317447324228
dc.contributor.referee1.fl_str_mv Andrade, Carolina Horta
dc.contributor.referee2.fl_str_mv Silva, Vinícius Barreto da
dc.contributor.referee3.fl_str_mv Sabino, José Ricardo
dc.contributor.referee4.fl_str_mv Oliveira, Valéria de
dc.contributor.authorLattes.fl_str_mv CV: http://lattes.cnpq.br/0458976053220883
dc.contributor.author.fl_str_mv Sousa, Mariana Côrtes de
contributor_str_mv Andrade, Carolina Horta
Andrade, Carolina Horta
Silva, Vinícius Barreto da
Sabino, José Ricardo
Oliveira, Valéria de
dc.subject.por.fl_str_mv Metabolismo
Flavonóides
Citocromo P450
Estudos de docking
topic Metabolismo
Flavonóides
Citocromo P450
Estudos de docking
Metabolism
Flavonoids
Cytochrome P450
Docking studies
CIENCIAS DA SAUDE::FARMACIA
dc.subject.eng.fl_str_mv Metabolism
Flavonoids
Cytochrome P450
Docking studies
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE::FARMACIA
description Flavonoids are an important class of natural products candidate drugs, and low molecular weight polyphenols, widely distributed throughout the plant kingdom. Investigations on its activities over the past 30 years, demonstrated a potential to prevent several diseases, among them cardiovascular diseases, inflammatory disorders, viral infections, diabetes and neurological disorders, in addition to its known antioxidant. The family of cytochrome P450 (CYP) is composed of monooxygenases, which play a crucial role in the metabolism of endogenous and exogenous substances, and participates in the metabolism of flavonoids. In this paper we describe the application of a methodology for exploring combined in silico prediction of sites of metabolism of quercetin, rutin, naringin and naringenin, found in abundance in nature. A methodology used was ligand based drug design (LBDD) to predict the sites of metabolism (SOM) and the program MetaPrint2D most likely estimate of the metabolites, combined with the method structure based drug design (SBDD) by using molecular docking and energy minimization, to predict the interaction of quercetin, rutin, naringin and naringenin with the isoforms CYP2C9 and CYP1A2. Metabolites were found several Phase I with catalytically active distance (<5 Å) and interaction sites described in the literature, with hydroxylation reactions of aliphatic, aromatic hydroxylation, dealkylation and O-dealkylation. The proposed in silico metabolic hydroxylation at the position corresponding to the C3' were consistent with studies in vitro and in vivo experiments described in the literature for naringin and naringenin. Amino acids of the active site of CYP isoforms have been identified as important in the positioning of the flavonoids quercetin, rutin, naringin and naringenin toward the heme, confirming the involvement of these isoforms in the metabolism of flavonoids.
publishDate 2012
dc.date.issued.fl_str_mv 2012-02-28
dc.date.accessioned.fl_str_mv 2015-03-06T18:30:44Z
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dc.identifier.citation.fl_str_mv SOUSA, M. C. Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides. 2012. 53 f. Dissertação (Mestrado em Ciências Farmacêuticas)–Universidade Federal de Goiás, Goiânia, 2012.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/4259
identifier_str_mv SOUSA, M. C. Estudos de modelagem molecular para previsão In Silico dos prováveis metabólitos de fase I de flavonóides. 2012. 53 f. Dissertação (Mestrado em Ciências Farmacêuticas)–Universidade Federal de Goiás, Goiânia, 2012.
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dc.publisher.none.fl_str_mv Universidade Federal de Goiás
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dc.publisher.department.fl_str_mv Faculdade Farmácia - FF (RG)
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