Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí

Detalhes bibliográficos
Autor(a) principal: Moura, Maria Edileuza Soares
Data de Publicação: 2014
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
dARK ID: ark:/38995/0013000004t7n
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/4334
Resumo: In a vast country, like Brazil surveillance of transmitted drug resistance to antiretroviral drugs/TDR should be continuous and extended to different locations and exposure groups. In the last decade significant geographic differences have been reported in the Brazilian AIDS epidemic: reduction in incidence of AIDS cases and related mortality in the southeast region (epicenter of the epidemic) contrasting with significant rise in both parameters in the northeast region. This study describes TDR and HIV-1 subtypes in protease-PR and reverse transcriptase-RT regions among antiretroviral (ARV) naïve patients from Piauí State (n=89) and Maranhão State (n=106), northeast, Brazil recruited between August 2011 and June 2012. HIV-1 pol gene (protease/PR and 2/3 of reverse transcriptase/RT) was sequenced from RNA. TDR was evaluated using the Calibrated Population Resistance (CPR) tool/Stanford HIV-1 Database, HIV-1 subtypes were defined by REGA software and phylogenetic analyses. Among patients from Piauí State (44 females, 45 males, 22 of them were men who have sex with men-MSM), overall TDR rate was 13.5%. TDR rate among MSM was 27.3% while among heterosexual men TDR rate was 10% and 9.1% among females. Single-class mutations to ARV (RT nucleoside and non nucleoside inhibitors NRTI/NNRTI or PR inhibitors/PI) predominated (10/12): M46L/V82F/L90M (PI), M41L/D67N (NRTI); K103NS/E138A (NNRTI). Two patients had dual class mutations: T215L (NRTI) and E138G/Y188L (NNRTI); T215N (NRTI) and F227L (NNRTI). Subtype B predominated (86.6%), non-subtype B isolates were rare: subtype F1 (n=1), subtype C (n=1). B/F1, F1/B and B/C intersubtype recombinants were observed in 11.2%. In Maranhão State females predominated (54.7%), median age was 31 years (range: 18-72); 78.3% reported heterosexual unprotected sex, 17.9% were MSM, two reported intravenous drug use/IDU. SDRM TDR rate was 3.8% (4/106). TDR was identified in adults (21-45 years), mostly males (3/4), 2 MSM, one IDU. Single-class mutations associated with NRTI (M184V; T215S) or NNRTI (K103S/N) were detected. No major PI mutation was identified; four isolates presented accessory mutations to PI (L10I/F, A71T/V). Subtype B represented 81.1% (86/106), subtype F1 1.9% (2/106), subtype C 2.8% (3/106) and 14.2% (15/106) were recombinants. The moderate frequency of BF recombinants in PI and MA where subtype F1 is rare suggests that recombinants generated in southeast/central-western were introduced and are circulating in northeast Brazil. Among patients from PI, high TDR rate observed among MSM ccontrasts with moderate rate among heterosexual patients. This result indicates that genotyping tests to detect drug resistance and TDR, mainly among MSM can contribute to define surveillance policies and to delineate prevention strategies to help control AIDS epidemic in northeast, Brazil.
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spelling Stefani, Mariane Martins de Araújohttp://lattes.cnpq.br/5581414958714905Eulálio, Kelsen DantasStefani, Mariane Martins de AraújoCouto-Fernandez, José CarlosEulálio, Kelsen DantasTeles, Sheila AraújoFonseca, Simone Gonçalves dahttp://lattes.cnpq.br/4445622348544212Moura, Maria Edileuza Soares2015-03-24T14:13:59Z2014-02-11Moura, M. E. S. Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí. 2014. 128 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/4334ark:/38995/0013000004t7nIn a vast country, like Brazil surveillance of transmitted drug resistance to antiretroviral drugs/TDR should be continuous and extended to different locations and exposure groups. In the last decade significant geographic differences have been reported in the Brazilian AIDS epidemic: reduction in incidence of AIDS cases and related mortality in the southeast region (epicenter of the epidemic) contrasting with significant rise in both parameters in the northeast region. This study describes TDR and HIV-1 subtypes in protease-PR and reverse transcriptase-RT regions among antiretroviral (ARV) naïve patients from Piauí State (n=89) and Maranhão State (n=106), northeast, Brazil recruited between August 2011 and June 2012. HIV-1 pol gene (protease/PR and 2/3 of reverse transcriptase/RT) was sequenced from RNA. TDR was evaluated using the Calibrated Population Resistance (CPR) tool/Stanford HIV-1 Database, HIV-1 subtypes were defined by REGA software and phylogenetic analyses. Among patients from Piauí State (44 females, 45 males, 22 of them were men who have sex with men-MSM), overall TDR rate was 13.5%. TDR rate among MSM was 27.3% while among heterosexual men TDR rate was 10% and 9.1% among females. Single-class mutations to ARV (RT nucleoside and non nucleoside inhibitors NRTI/NNRTI or PR inhibitors/PI) predominated (10/12): M46L/V82F/L90M (PI), M41L/D67N (NRTI); K103NS/E138A (NNRTI). Two patients had dual class mutations: T215L (NRTI) and E138G/Y188L (NNRTI); T215N (NRTI) and F227L (NNRTI). Subtype B predominated (86.6%), non-subtype B isolates were rare: subtype F1 (n=1), subtype C (n=1). B/F1, F1/B and B/C intersubtype recombinants were observed in 11.2%. In Maranhão State females predominated (54.7%), median age was 31 years (range: 18-72); 78.3% reported heterosexual unprotected sex, 17.9% were MSM, two reported intravenous drug use/IDU. SDRM TDR rate was 3.8% (4/106). TDR was identified in adults (21-45 years), mostly males (3/4), 2 MSM, one IDU. Single-class mutations associated with NRTI (M184V; T215S) or NNRTI (K103S/N) were detected. No major PI mutation was identified; four isolates presented accessory mutations to PI (L10I/F, A71T/V). Subtype B represented 81.1% (86/106), subtype F1 1.9% (2/106), subtype C 2.8% (3/106) and 14.2% (15/106) were recombinants. The moderate frequency of BF recombinants in PI and MA where subtype F1 is rare suggests that recombinants generated in southeast/central-western were introduced and are circulating in northeast Brazil. Among patients from PI, high TDR rate observed among MSM ccontrasts with moderate rate among heterosexual patients. This result indicates that genotyping tests to detect drug resistance and TDR, mainly among MSM can contribute to define surveillance policies and to delineate prevention strategies to help control AIDS epidemic in northeast, Brazil.Em um país extenso como o Brasil, a vigilância da resistência transmitida a antirretrovirais/TDR deve ser contínua e estendida a diferentes grupos populacionais e regiões geográficas. Na última década, diferenças regionais significativas foram relatadas na epidemia de HIV/aids no Brasil: redução na incidência de casos de aids e mortalidade na região sudeste (epicentro da epidemia) contrastando com aumento significativo de ambos parametros na região nordeste. O objetivo deste estudo foi descrever a prevalência de TDR e subtipos de HIV-1 na protease-PR e parte da transcriptase reversa-TR em isolados de pacientes virgens de tratamento que vivem nos estados do Piauí e do Maranhão, nordeste, Brasil. Pacientes virgens de tratamento antirretroviral/ARV recrutados entre agosto 2011- junho 2012 (Maranhão, n=106; Piauí, n=89) tiveram o gene pol (protease/PR e 2/3 da transcriptasecreversa/TR) sequenciado a partir do RNA. TDR foi avaliada mediante uso da Calibrated Population Resistance (CPR) tool/Stanford HIV-1 Database, subtipos de HIV-1 foram definidos pelo software REGA e por análise filogenética. Entre os pacientes do Piauí (44 mulheres, 45 homens, 22 deles declararam-se homens que fazem sexo com homens/HSH), a taxa de TDR foi 13,5%. TDR entre HSH foi 27,3%. Entre os homens heterossexuais, a taxa de TDR foi de 10% e entre as mulheres 9,1%. Mutações de resistência a uma classe de ARV (inibidores nucleosidicos ou não-nucleosidicos da TR/ITRN/ITRNN ou inibidores da PR/IP) predominaram (10/12): M46L/V82F/L90M (IP); M41L/D67N (ITRN); K103NS/E138A (ITRNN). Dois pacientes tiveram mutações de resistência a duas classes de ARV: T215L (ITRN) e E138G/Y188L (ITRNN); T215N (ITRN) e F227L (ITRNN). O subtipo B representou 86,6%, subtipos não B foram raros: subtipo F1 (n=1) e o subtipo C (n=1). Recombinantes intersubtipos B/F1, F1/B e B/C foram observados em 11,2 % dos isolados. No Maranhão predominou mulheres (54,7%), com mediana de idade de 31 anos (variação: 18-72); 78,3% relatou relação heterossexual desprotegida, 17,9% dos homens declararam-se HSH, dois referiram uso de drogas injetáveis. Entre os pacientes do MA 3,8% apresentou TDR (4/106). TDR foi identificada em adultos (21-45 anos), a maioria do sexo masculino (3/4), 2 HSH, um usuário de droga injetável. Mutações associadas a resistência aos ITRN (M184V; T215S) e aos ITRNN (K103S/N) foram detectadas. Mutações principais aos IP não foram identificadas, quatro isolados apresentaram mutações acessórias aos IP (L10I/F, A71T/V). O subtipo B representou 81,1% (86/106) dos isolados, o subtipo F1 1,9% (2/106), o subtipo C 2,8% (3/106) e 14,2% (15/106) eram recombinantes. A moderada prevalência de recombinantes BF detectada no PI e MA onde a frequência de subtipo F1 é rara, sugere que recombinantes gerados no sudeste/centro-oeste tenham sido introduzidos e estão circulando no nordeste. Nos pacientes do PI, alta taxa de TDR observada entre HSH contrastou com taxa moderada entre heterossexuais. Este resultado indica que a realização de testes de genotipagem para resistência para avaliar TDR, principalmente entre HSH pode contribuir para definir diretrizes de vigilância e delinear estratégias de prevenção para auxiliar o controle da epidemia de aids na região nordeste, Brasil.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2015-03-24T12:49:00Z No. of bitstreams: 2 Tese - Maria Edileuza Soares Moura - 2014.pdf: 2617829 bytes, checksum: 8fe2eea4d03e82310f1d867e6bfbcf37 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2015-03-24T14:13:59Z (GMT) No. of bitstreams: 2 Tese - Maria Edileuza Soares Moura - 2014.pdf: 2617829 bytes, checksum: 8fe2eea4d03e82310f1d867e6bfbcf37 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2015-03-24T14:13:59Z (GMT). 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dc.title.por.fl_str_mv Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
dc.title.alternative.eng.fl_str_mv HIV-1 transmitted drug resistance and genetic diversity among patients from Maranhão and Piauí States
title Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
spellingShingle Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
Moura, Maria Edileuza Soares
Epidemiologia molecular
HIV-1
Genotipagem
Molecular epidemiology
HIV-1
Genotyping
CIENCIAS DA SAUDE::MEDICINA
title_short Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
title_full Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
title_fullStr Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
title_full_unstemmed Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
title_sort Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí
author Moura, Maria Edileuza Soares
author_facet Moura, Maria Edileuza Soares
author_role author
dc.contributor.advisor1.fl_str_mv Stefani, Mariane Martins de Araújo
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5581414958714905
dc.contributor.advisor-co1.fl_str_mv Eulálio, Kelsen Dantas
dc.contributor.referee1.fl_str_mv Stefani, Mariane Martins de Araújo
dc.contributor.referee2.fl_str_mv Couto-Fernandez, José Carlos
dc.contributor.referee3.fl_str_mv Eulálio, Kelsen Dantas
dc.contributor.referee4.fl_str_mv Teles, Sheila Araújo
dc.contributor.referee5.fl_str_mv Fonseca, Simone Gonçalves da
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4445622348544212
dc.contributor.author.fl_str_mv Moura, Maria Edileuza Soares
contributor_str_mv Stefani, Mariane Martins de Araújo
Eulálio, Kelsen Dantas
Stefani, Mariane Martins de Araújo
Couto-Fernandez, José Carlos
Eulálio, Kelsen Dantas
Teles, Sheila Araújo
Fonseca, Simone Gonçalves da
dc.subject.por.fl_str_mv Epidemiologia molecular
HIV-1
Genotipagem
topic Epidemiologia molecular
HIV-1
Genotipagem
Molecular epidemiology
HIV-1
Genotyping
CIENCIAS DA SAUDE::MEDICINA
dc.subject.eng.fl_str_mv Molecular epidemiology
HIV-1
Genotyping
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE::MEDICINA
description In a vast country, like Brazil surveillance of transmitted drug resistance to antiretroviral drugs/TDR should be continuous and extended to different locations and exposure groups. In the last decade significant geographic differences have been reported in the Brazilian AIDS epidemic: reduction in incidence of AIDS cases and related mortality in the southeast region (epicenter of the epidemic) contrasting with significant rise in both parameters in the northeast region. This study describes TDR and HIV-1 subtypes in protease-PR and reverse transcriptase-RT regions among antiretroviral (ARV) naïve patients from Piauí State (n=89) and Maranhão State (n=106), northeast, Brazil recruited between August 2011 and June 2012. HIV-1 pol gene (protease/PR and 2/3 of reverse transcriptase/RT) was sequenced from RNA. TDR was evaluated using the Calibrated Population Resistance (CPR) tool/Stanford HIV-1 Database, HIV-1 subtypes were defined by REGA software and phylogenetic analyses. Among patients from Piauí State (44 females, 45 males, 22 of them were men who have sex with men-MSM), overall TDR rate was 13.5%. TDR rate among MSM was 27.3% while among heterosexual men TDR rate was 10% and 9.1% among females. Single-class mutations to ARV (RT nucleoside and non nucleoside inhibitors NRTI/NNRTI or PR inhibitors/PI) predominated (10/12): M46L/V82F/L90M (PI), M41L/D67N (NRTI); K103NS/E138A (NNRTI). Two patients had dual class mutations: T215L (NRTI) and E138G/Y188L (NNRTI); T215N (NRTI) and F227L (NNRTI). Subtype B predominated (86.6%), non-subtype B isolates were rare: subtype F1 (n=1), subtype C (n=1). B/F1, F1/B and B/C intersubtype recombinants were observed in 11.2%. In Maranhão State females predominated (54.7%), median age was 31 years (range: 18-72); 78.3% reported heterosexual unprotected sex, 17.9% were MSM, two reported intravenous drug use/IDU. SDRM TDR rate was 3.8% (4/106). TDR was identified in adults (21-45 years), mostly males (3/4), 2 MSM, one IDU. Single-class mutations associated with NRTI (M184V; T215S) or NNRTI (K103S/N) were detected. No major PI mutation was identified; four isolates presented accessory mutations to PI (L10I/F, A71T/V). Subtype B represented 81.1% (86/106), subtype F1 1.9% (2/106), subtype C 2.8% (3/106) and 14.2% (15/106) were recombinants. The moderate frequency of BF recombinants in PI and MA where subtype F1 is rare suggests that recombinants generated in southeast/central-western were introduced and are circulating in northeast Brazil. Among patients from PI, high TDR rate observed among MSM ccontrasts with moderate rate among heterosexual patients. This result indicates that genotyping tests to detect drug resistance and TDR, mainly among MSM can contribute to define surveillance policies and to delineate prevention strategies to help control AIDS epidemic in northeast, Brazil.
publishDate 2014
dc.date.issued.fl_str_mv 2014-02-11
dc.date.accessioned.fl_str_mv 2015-03-24T14:13:59Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
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dc.identifier.citation.fl_str_mv Moura, M. E. S. Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí. 2014. 128 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2014.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/4334
dc.identifier.dark.fl_str_mv ark:/38995/0013000004t7n
identifier_str_mv Moura, M. E. S. Resistência transmitida a antirretrovirais e diversidade genética do HIV-1 em pacientes dos estados do Maranhão e do Piauí. 2014. 128 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2014.
ark:/38995/0013000004t7n
url http://repositorio.bc.ufg.br/tede/handle/tede/4334
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 6085308344741430434
dc.relation.confidence.fl_str_mv 600
600
600
600
dc.relation.department.fl_str_mv -7769011444564556288
dc.relation.cnpq.fl_str_mv -969369452308786627
dc.relation.sponsorship.fl_str_mv 2075167498588264571
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
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rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Medicina Tropical e Saúde Publica (IPTSP)
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Instituto de Patologia Tropical e Saúde Pública - IPTSP (RG)
publisher.none.fl_str_mv Universidade Federal de Goiás
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repository.mail.fl_str_mv tasesdissertacoes.bc@ufg.br
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