Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
dARK ID: | ark:/38995/0013000002fqs |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/4755 |
Resumo: | Drug discovery and development process requires high investments of both time and money. Strategies for drug design aided by computers, CADD (Computer-Aided Drug Design) have gained prominence over the last decades, in order to minimize the impact of those costs. CADD techniques also allow the exploration of a greater number of biological targets and promising molecules. Malaria is an endemic disease in Africa and in South American caused by the protozoa of the genus Plasmodium. In 2012, 207 million cases and 627,000 deaths were estimated, according to the World Health Organization. The enzyme dihydroorotate dehydrogenase (DHODH) catalyzes the fourth step of the pyrimidine biosynthesis, and consists in a validated target for the design of new antimalarial agents. The aim of this study was to develop structure-activity relationships (SAR) rules and to generate quantitative structure-activity relationships (QSAR) models using a set of triazolopyrimidines described in the literature as inhibitors of DHODH from P. falciparum (PfDHODH). SAR rules were established using methods of clustering, activity cliffs and activity landscapes. In addition, several models of 2D-QSAR and hologram QSAR (HQSAR) were developed and validated. The SAR analyses allowed the understanding of the basic structural requirements for the antimalarial activity of triazolopyrimidines, like alkyl halides substituents on the triazolopimidinic ring, hydrophobic substituents in the para position on the benzene ring, all in agreement with the chemical space inside the active site of the PfDHODH. The HQSAR and 2D-QSAR models showed good statistical parameters and good predictive ability. The HQSAR contour maps were also consistent with the chemical space of the active site of the enzyme. The results of this study could serve as guide for the design of new antimalarials with higher potency. |
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Andrade, Carolina Hortahttp://lattes.cnpq.br/2018317447324228Andrade, Carolina HortaSilva, Vinícius Barreto daBraga, Rodolpho de Camposhttp://lattes.cnpq.br/7801128453075557Macedo, Karlla Gonçalves de2015-10-23T17:16:49Z2014-08-05MACEDO, K. G. Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum. 2014. 100 f. Dissertação (Mestrado em Ciências Farmacêuticas) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/4755ark:/38995/0013000002fqsDrug discovery and development process requires high investments of both time and money. Strategies for drug design aided by computers, CADD (Computer-Aided Drug Design) have gained prominence over the last decades, in order to minimize the impact of those costs. CADD techniques also allow the exploration of a greater number of biological targets and promising molecules. Malaria is an endemic disease in Africa and in South American caused by the protozoa of the genus Plasmodium. In 2012, 207 million cases and 627,000 deaths were estimated, according to the World Health Organization. The enzyme dihydroorotate dehydrogenase (DHODH) catalyzes the fourth step of the pyrimidine biosynthesis, and consists in a validated target for the design of new antimalarial agents. The aim of this study was to develop structure-activity relationships (SAR) rules and to generate quantitative structure-activity relationships (QSAR) models using a set of triazolopyrimidines described in the literature as inhibitors of DHODH from P. falciparum (PfDHODH). SAR rules were established using methods of clustering, activity cliffs and activity landscapes. In addition, several models of 2D-QSAR and hologram QSAR (HQSAR) were developed and validated. The SAR analyses allowed the understanding of the basic structural requirements for the antimalarial activity of triazolopyrimidines, like alkyl halides substituents on the triazolopimidinic ring, hydrophobic substituents in the para position on the benzene ring, all in agreement with the chemical space inside the active site of the PfDHODH. The HQSAR and 2D-QSAR models showed good statistical parameters and good predictive ability. The HQSAR contour maps were also consistent with the chemical space of the active site of the enzyme. The results of this study could serve as guide for the design of new antimalarials with higher potency.O processo de planejamento e desenvolvimento de novos fármacos é um trabalho complexo, que demanda elevados investimentos de tempo e dinheiro. Estratégias de planejamento de fármacos auxiliadas por computador, CADD (Computer-Aided Drug Design) vêm se destacando, pois minimizam gastos e tempo, além de poder explorar um número maior de alvos biológicos e moléculas promissoras. A malária é uma doença endêmica grave na África e América do Sul, causada por protozoários do gênero Plasmodium. Em 2012 foram estimados 207 milhões de casos e 627.000 mortes, de acordo com a Organização Mundial da Saúde. A enzima diidroorotato desidrogenase (DHODH) atua na quarta etapa da biossíntese de pirimidinas, é um alvo validado para o planejamento de novos agentes antimaláricos. O objetivo geral deste trabalho foi desenvolver regras de relação entre estrutura e atividade (SAR) e modelos robustos e preditivos de relações quantitativas entre estrutura e atividade bidimensionais (QSAR-2D), utilizando um conjunto de triazolopirimidinas descritas na literatura como inibidores da DHODH de P. falciparum (PfDHODH). Foram desenvolvidas regras de SAR utilizando os métodos de análise de agrupamentos, cliffs de atividade e landscapes de atividade. Além disso, desenvolveu-se e validou-se vários modelos de QSAR–2D e de holograma QSAR (HQSAR). As análises de SAR, permitiram estabelecer requisitos estruturais essenciais para a atividade antimalárica das triazolopirimidinas, como substituintes haletos de alquila no anel triazolopimidínico, substituintes hidrofóbicos na posição para no anel benzênico, todos de acordo com o espaço químico da cavidade de interação da PfDHODH. Os modelos de HQSAR e QSAR-2D apresentaram bons parâmetros estatísticos e boa capacidade preditiva. Os mapas de contribuição de HQSAR também estão de acordo com o espaço químico da cavidade de interação da PfDHODH. Os dados obtidos servem como guia para o planejamento de novos antimaláricos com maior potência.Submitted by Erika Demachki (erikademachki@gmail.com) on 2015-10-23T17:15:13Z No. of bitstreams: 2 Dissertação - Karlla Gonçalves Macedo - 2014.pdf: 3559333 bytes, checksum: be77b4325f787c0048a0c9a15e8c800b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Erika Demachki (erikademachki@gmail.com) on 2015-10-23T17:16:49Z (GMT) No. of bitstreams: 2 Dissertação - Karlla Gonçalves Macedo - 2014.pdf: 3559333 bytes, checksum: be77b4325f787c0048a0c9a15e8c800b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2015-10-23T17:16:49Z (GMT). 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dc.title.por.fl_str_mv |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
title |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
spellingShingle |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum Macedo, Karlla Gonçalves de Malária Plasmodium falciparum Planejamento de fármacos Diidroorotato desidrogenase SAR QSAR Malaria Plasmodium falciparum Drug design Dihydroorotate dehydrogenase FARMACIA::ANALISE E CONTROLE E MEDICAMENTOS |
title_short |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
title_full |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
title_fullStr |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
title_full_unstemmed |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
title_sort |
Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum |
author |
Macedo, Karlla Gonçalves de |
author_facet |
Macedo, Karlla Gonçalves de |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Andrade, Carolina Horta |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/2018317447324228 |
dc.contributor.referee1.fl_str_mv |
Andrade, Carolina Horta |
dc.contributor.referee2.fl_str_mv |
Silva, Vinícius Barreto da |
dc.contributor.referee3.fl_str_mv |
Braga, Rodolpho de Campos |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/7801128453075557 |
dc.contributor.author.fl_str_mv |
Macedo, Karlla Gonçalves de |
contributor_str_mv |
Andrade, Carolina Horta Andrade, Carolina Horta Silva, Vinícius Barreto da Braga, Rodolpho de Campos |
dc.subject.por.fl_str_mv |
Malária Plasmodium falciparum Planejamento de fármacos Diidroorotato desidrogenase SAR QSAR |
topic |
Malária Plasmodium falciparum Planejamento de fármacos Diidroorotato desidrogenase SAR QSAR Malaria Plasmodium falciparum Drug design Dihydroorotate dehydrogenase FARMACIA::ANALISE E CONTROLE E MEDICAMENTOS |
dc.subject.eng.fl_str_mv |
Malaria Plasmodium falciparum Drug design Dihydroorotate dehydrogenase |
dc.subject.cnpq.fl_str_mv |
FARMACIA::ANALISE E CONTROLE E MEDICAMENTOS |
description |
Drug discovery and development process requires high investments of both time and money. Strategies for drug design aided by computers, CADD (Computer-Aided Drug Design) have gained prominence over the last decades, in order to minimize the impact of those costs. CADD techniques also allow the exploration of a greater number of biological targets and promising molecules. Malaria is an endemic disease in Africa and in South American caused by the protozoa of the genus Plasmodium. In 2012, 207 million cases and 627,000 deaths were estimated, according to the World Health Organization. The enzyme dihydroorotate dehydrogenase (DHODH) catalyzes the fourth step of the pyrimidine biosynthesis, and consists in a validated target for the design of new antimalarial agents. The aim of this study was to develop structure-activity relationships (SAR) rules and to generate quantitative structure-activity relationships (QSAR) models using a set of triazolopyrimidines described in the literature as inhibitors of DHODH from P. falciparum (PfDHODH). SAR rules were established using methods of clustering, activity cliffs and activity landscapes. In addition, several models of 2D-QSAR and hologram QSAR (HQSAR) were developed and validated. The SAR analyses allowed the understanding of the basic structural requirements for the antimalarial activity of triazolopyrimidines, like alkyl halides substituents on the triazolopimidinic ring, hydrophobic substituents in the para position on the benzene ring, all in agreement with the chemical space inside the active site of the PfDHODH. The HQSAR and 2D-QSAR models showed good statistical parameters and good predictive ability. The HQSAR contour maps were also consistent with the chemical space of the active site of the enzyme. The results of this study could serve as guide for the design of new antimalarials with higher potency. |
publishDate |
2014 |
dc.date.issued.fl_str_mv |
2014-08-05 |
dc.date.accessioned.fl_str_mv |
2015-10-23T17:16:49Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
MACEDO, K. G. Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum. 2014. 100 f. Dissertação (Mestrado em Ciências Farmacêuticas) - Universidade Federal de Goiás, Goiânia, 2014. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/4755 |
dc.identifier.dark.fl_str_mv |
ark:/38995/0013000002fqs |
identifier_str_mv |
MACEDO, K. G. Estudos de SAR e QSAR para um conjunto de triazolopirimidinas inibidores da enzima diidroorotato desidrogenase de Plasmodium falciparum. 2014. 100 f. Dissertação (Mestrado em Ciências Farmacêuticas) - Universidade Federal de Goiás, Goiânia, 2014. ark:/38995/0013000002fqs |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/4755 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.program.fl_str_mv |
824936988196152412 |
dc.relation.confidence.fl_str_mv |
600 600 600 |
dc.relation.department.fl_str_mv |
6010281161524209375 |
dc.relation.cnpq.fl_str_mv |
6216025074656932336 |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.publisher.program.fl_str_mv |
Programa de Pós-graduação em Ciências Farmacêuticas (FF) |
dc.publisher.initials.fl_str_mv |
UFG |
dc.publisher.country.fl_str_mv |
Brasil |
dc.publisher.department.fl_str_mv |
Faculdade Farmácia - FF (RG) |
publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFG instname:Universidade Federal de Goiás (UFG) instacron:UFG |
instname_str |
Universidade Federal de Goiás (UFG) |
instacron_str |
UFG |
institution |
UFG |
reponame_str |
Repositório Institucional da UFG |
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Repositório Institucional da UFG |
bitstream.url.fl_str_mv |
http://repositorio.bc.ufg.br/tede/bitstreams/15c7f8c3-28dc-4f92-9393-df14af709b9f/download http://repositorio.bc.ufg.br/tede/bitstreams/80397c18-a5fc-45db-a523-aba9a6ce6e96/download http://repositorio.bc.ufg.br/tede/bitstreams/fcc4fbe9-4400-4f51-9b47-45b335fa4950/download http://repositorio.bc.ufg.br/tede/bitstreams/3f20ec4d-e459-4252-bdd8-489e00668396/download http://repositorio.bc.ufg.br/tede/bitstreams/311b154f-ef39-4e5d-afdb-ad8a4646d273/download http://repositorio.bc.ufg.br/tede/bitstreams/d61fdeb1-3c4f-4987-a69f-e27a932ff409/download http://repositorio.bc.ufg.br/tede/bitstreams/97918edc-d4c8-41d9-85fc-cf1c687d310f/download |
bitstream.checksum.fl_str_mv |
bd3efa91386c1718a7f26a329fdcb468 4afdbb8c545fd630ea7db775da747b2f 683d9883b2ad62ac3b8bafc566b2e600 9da0b6dfac957114c6a7714714b86306 be77b4325f787c0048a0c9a15e8c800b 693e90efdcbf72ed4ffa008d5b634d5b 8eca7965e8111fd5ca2e0aafbdfe94bd |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFG - Universidade Federal de Goiás (UFG) |
repository.mail.fl_str_mv |
tasesdissertacoes.bc@ufg.br |
_version_ |
1815172534778200064 |