Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares

Detalhes bibliográficos
Autor(a) principal: FÉRES, Valéria Christina de Rezende
Data de Publicação: 2008
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tde/1589
Resumo: Nowadays, dengue constitute the major public health problem, because is relevant cause of illness and death between thousands people that resident in the tropical and subtropical regions in world. The dengue virus is classified as four serotypes (DENV-1, 2, 3 and 4) according to antigenic differences and characterized intra-typical groups called genotypes. The laboratorial surveillance enables the diagnostic confirmation of dengue infection and monitoring serotypes circulating through the routine diagnostic techniques. Recently, the use molecular techniques has contributed to characterize and monitoring of the genotypes potentially virulent during epidemic and knowledge of biology of dengue virus. This thesis was organized in an introduction section, that include a literature review on dengue, and two manuscripts that describing the research conducted with focus on laboratory diagnostic and molecular epidemiology. The first manuscript entitled Laboratorial Surveillance of Dengue Virus in Central-Brazil, 1994-2003, was published at Journal of Clinical Virology, 2006 37 (3): 179-83. In this study we present the results of the virological surveillance for dengue cases conducted in the city of Goiânia (~1,200,000 population) from 1994 to 2003. Suspected cases were from the main public infectious disease reference hospital and outpatient clinics covering the metropolitan area. Serological and virus isolation tests were conduced at the regional reference laboratory. Our objective was to report dengue circulating serotypes from 1994 to 2003 and the role of distinct serotypes on dengue clinical outcomes in Central Brazil and to characterize serotypes and genotypes by reverse transcriptase PCR (RT-PCR) and by restricted site-specific PCR (RSS-PCR) patterns in selected samples. Laboratory surveillance identified mainly DEN-1 serotype from 1994 to 2002 shifting to a high circulation of DEN-3 in 2003. The adults (87,4%) were the most affected group and dengue fever accounted for the majority of the cases. Diagnosis of dengue was confirmed in ~50% of the suspected and enhanced by RT-PCR. RSS-PCR patterns for DEN-1 and DEN-3 corresponded to the circulating subtypes in the country. The infection DENV-3 did not suggest a major role of infecting DEN-3 in increasing disease severity during its first-year spread in Central Brazil. The second manuscript, to be submitted for publication is entitled: Epidemiologia Molecular do Vírus Dengue tipo 3 em Goiânia GO, 2005-2006. The objective of this manuscript was to characterize the DENV-3 genotype circulating isolated from well-characterized clinical and laboratory samples in Goiânia-GO/Brasil. Seven samples had sequences of the prM/M/E region obtained and comparative analysis was performed with the reference strains. The results showed the homology of the genomics sequences with genotype III strains. The nucleotide identity of the all the samples varied from 97.0% to 99.6% and the amino acid sequences from 97.5% to 99.5%. The analysis of the nucleotide sequence revealed silent mutation and 14 amino acid changes in the protein deduced from gene prM/M/E. In conclusion, the study confirms that the strains of DENV-3 in Central Brazil relate to genotype III. The genomic changes along Domain III of the protein E were observed, which could affect the pathogenicity, but were not consistent between samples of DCC and DHF. Samples of patients with dengue fever had mutations related to viral attenuation. More investigation is necessary to evidence of genomic changes found in relationship with clinical forms.
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spelling MARTELLI, Celina Maria Turchihttp://lattes.cnpq.br/5867052489026059http://lattes.cnpq.br/8089054699896454FÉRES, Valéria Christina de Rezende2014-07-29T15:26:24Z2009-10-222008-08-06FÉRES, Valéria Christina de Rezende. Molecular epidemiology of dengue virus in Goiânia, 1994-2006: laboratorial surveillance and characterization of circulate serotypes. 2008. 149 f. Tese (Doutorado em Ciências da Saúde) - Universidade Federal de Goiás, Goiânia, 2008.http://repositorio.bc.ufg.br/tede/handle/tde/1589Nowadays, dengue constitute the major public health problem, because is relevant cause of illness and death between thousands people that resident in the tropical and subtropical regions in world. The dengue virus is classified as four serotypes (DENV-1, 2, 3 and 4) according to antigenic differences and characterized intra-typical groups called genotypes. The laboratorial surveillance enables the diagnostic confirmation of dengue infection and monitoring serotypes circulating through the routine diagnostic techniques. Recently, the use molecular techniques has contributed to characterize and monitoring of the genotypes potentially virulent during epidemic and knowledge of biology of dengue virus. This thesis was organized in an introduction section, that include a literature review on dengue, and two manuscripts that describing the research conducted with focus on laboratory diagnostic and molecular epidemiology. The first manuscript entitled Laboratorial Surveillance of Dengue Virus in Central-Brazil, 1994-2003, was published at Journal of Clinical Virology, 2006 37 (3): 179-83. In this study we present the results of the virological surveillance for dengue cases conducted in the city of Goiânia (~1,200,000 population) from 1994 to 2003. Suspected cases were from the main public infectious disease reference hospital and outpatient clinics covering the metropolitan area. Serological and virus isolation tests were conduced at the regional reference laboratory. Our objective was to report dengue circulating serotypes from 1994 to 2003 and the role of distinct serotypes on dengue clinical outcomes in Central Brazil and to characterize serotypes and genotypes by reverse transcriptase PCR (RT-PCR) and by restricted site-specific PCR (RSS-PCR) patterns in selected samples. Laboratory surveillance identified mainly DEN-1 serotype from 1994 to 2002 shifting to a high circulation of DEN-3 in 2003. The adults (87,4%) were the most affected group and dengue fever accounted for the majority of the cases. Diagnosis of dengue was confirmed in ~50% of the suspected and enhanced by RT-PCR. RSS-PCR patterns for DEN-1 and DEN-3 corresponded to the circulating subtypes in the country. The infection DENV-3 did not suggest a major role of infecting DEN-3 in increasing disease severity during its first-year spread in Central Brazil. The second manuscript, to be submitted for publication is entitled: Epidemiologia Molecular do Vírus Dengue tipo 3 em Goiânia GO, 2005-2006. The objective of this manuscript was to characterize the DENV-3 genotype circulating isolated from well-characterized clinical and laboratory samples in Goiânia-GO/Brasil. Seven samples had sequences of the prM/M/E region obtained and comparative analysis was performed with the reference strains. The results showed the homology of the genomics sequences with genotype III strains. The nucleotide identity of the all the samples varied from 97.0% to 99.6% and the amino acid sequences from 97.5% to 99.5%. The analysis of the nucleotide sequence revealed silent mutation and 14 amino acid changes in the protein deduced from gene prM/M/E. In conclusion, the study confirms that the strains of DENV-3 in Central Brazil relate to genotype III. The genomic changes along Domain III of the protein E were observed, which could affect the pathogenicity, but were not consistent between samples of DCC and DHF. Samples of patients with dengue fever had mutations related to viral attenuation. More investigation is necessary to evidence of genomic changes found in relationship with clinical forms.Atualmente, a dengue representa um dos maiores problemas em saúde pública, pois é causa de doença e morte entre milhares de pessoas que residem nas regiões tropicais e subtropicais do mundo. Os vírus dengue existem como quatro sorotipos virais (DENV-1 a DENV-4) de acordo com diferenças antigênicas, sendo caracterizados grupos intra-típicos denominados genótipos. A vigilância laboratorial possibilita a confirmação diagnóstica de infecção por dengue e o monitoramento de sorotipos circulantes, através de técnicas diagnósticas de rotina. Recentemente, o uso de técnicas moleculares tem contribuído para a caracterização e monitoramento de genótipos potencialmente virulentos na vigência de epidemias e melhor entendimento da biologia do vírus. Esta tese de doutorado compreende uma introdução que contempla uma revisão da literatura sobre dengue e dois manuscritos que descrevem as pesquisas realizadas com enfoque no diagnóstico laboratorial e epidemiologia molecular. O primeiro manuscrito intitulado Laboratorial Surveillance of Dengue Virus in Central-Brazil, 1994-2003, foi publicado no Journal of Clinical Virology, 2006 37 (3): 179-83. Neste estudo, apresentamos os resultados de uma vigilância laboratorial conduzida na cidade de Goiânia na região Centro-Oeste do Brasil, desde a introdução dos vírus dengue em 1994 até 2003. Casos com suspeita clínica de dengue foram atendidos em unidades de saúde e hospitais de referência da região metropolitana e os testes sorológicos e/ou isolamento viral realizados no laboratório de referência estadual LACEN-GO. Nosso objetivo foi descrever sobre os sorotipos virais circulantes de dengue nos anos de 1994 a 2003 e o seu papel nos desfechos clínicos de dengue na região Centro-Oeste do Brasil e caracterizar sorotipos e genótipos ou subtipos genômicos pela RT-PCR e RSS-PCR em amostras selecionadas. O sorotipo DENV-1 foi identificado como prevalente nos anos 1994 a 2002, sendo substituído por DENV-3 em 2003. Os adultos (87,4%) foram mais atingidos e a dengue clássica a mais diagnosticada. A dengue foi confirmada em 50% dos casos suspeitos de dengue incrementado pela RT-PCR. Os genótipos ou subtipos genômicos do DENV-1 e DENV-3 corresponderam circulantes no país. A infecção pelo DENV-3 não sugere um papel relevante no aumento da gravidade da doença durante seu primeiro ano de dispersão no Centro-Oeste do Brasil. O segundo manuscrito, a ser submetido à publicação, foi intitulado Epidemiologia Molecular do Vírus Dengue tipo 3 em Goiânia GO, 2005-2006. O objetivo desse trabalho foi caracterizar o genótipo circulante do DENV-3 isolado de amostras bem caracterizadas clínica e laboratorialmente em Goiânia-GO/Brasil e analisar as alterações genômicas encontradas. Sete seqüências regiões prM/M/E, foram obtidas e analisadas em comparação com cepas protótipo do DENV-3. As seqüências do estudo apresentaram maior homologia com a cepas do genótipo III. O percentual de identidade nucleotídica das amostras do DENV-3 seqüenciadas variou de 97,0% a 99,6% e de aminoácidos 97,5% a 99,5%, mostrando-se conservadas. A análise da seqüência nucleotídica das amostras do estudo revelou mutações silenciosas e 14 substituições de aminoácidos na seqüência da proteína deduzida do gene prM/M/E. Em conclusão, o estudo confirma que as cepas de DENV-3 da região centrooeste pertencem ao genótipo III. Alterações genômicas significativas foram observadas ao longo do domínio III da proteína E, as quais poderiam afetar a patogenicidade, entretanto não foram consistentes entre as amostras de DCC e FHD. As amostras de pacientes com dengue clássica apresentaram alterações em resíduos de aminoácidos no domínio III relatados como pontos de atenuação viral. Maiores investigações serão necessárias para confirmar as alterações encontradas e sua relação com as formas clínicas.Made available in DSpace on 2014-07-29T15:26:24Z (GMT). No. of bitstreams: 1 tese valeria.pdf: 2053227 bytes, checksum: 9897e5628e288900b234c5acbe0fb42b (MD5) Previous issue date: 2008-08-06application/pdfhttp://repositorio.bc.ufg.br/TEDE/retrieve/4423/tese%20valeria.pdf.jpgporUniversidade Federal de GoiásDoutorado em Medicina TropicalUFGBRCiências da SaúdeVírus denguegenótipo, epidemiologia molecular, seqüenciamento genômico1. Vírus (Dengue) 1994-2006 Goiânia (GO) 2. Genótipos 3. Epidemiologia molecular 4. Seqüenciamento genomicoDengue virusgenotype, molecular epidemiology, genomic sequecingCNPQ::CIENCIAS DA SAUDE::SAUDE COLETIVA::EPIDEMIOLOGIAEpidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circularesMolecular epidemiology of dengue virus in Goiânia, 1994-2006: laboratorial surveillance and characterization of circulate serotypesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGORIGINALtese valeria.pdfapplication/pdf2053227http://repositorio.bc.ufg.br/tede/bitstreams/b30c33fb-ca31-4729-b6d7-86f016b61bf6/download9897e5628e288900b234c5acbe0fb42bMD51THUMBNAILtese valeria.pdf.jpgtese valeria.pdf.jpgGenerated Thumbnailimage/jpeg3538http://repositorio.bc.ufg.br/tede/bitstreams/cafd3390-d14c-4679-ad01-6ec7cfa5a383/download03d4da2ed1730a9b5d1e02ed0b92b880MD52tde/15892014-07-30 03:14:00.615open.accessoai:repositorio.bc.ufg.br:tde/1589http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttp://repositorio.bc.ufg.br/oai/requesttasesdissertacoes.bc@ufg.bropendoar:2014-07-30T06:14Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)false
dc.title.por.fl_str_mv Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
dc.title.alternative.eng.fl_str_mv Molecular epidemiology of dengue virus in Goiânia, 1994-2006: laboratorial surveillance and characterization of circulate serotypes
title Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
spellingShingle Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
FÉRES, Valéria Christina de Rezende
Vírus dengue
genótipo, epidemiologia molecular, seqüenciamento genômico
1. Vírus (Dengue) 1994-2006 Goiânia (GO) 2. Genótipos 3. Epidemiologia molecular 4. Seqüenciamento genomico
Dengue virus
genotype, molecular epidemiology, genomic sequecing
CNPQ::CIENCIAS DA SAUDE::SAUDE COLETIVA::EPIDEMIOLOGIA
title_short Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
title_full Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
title_fullStr Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
title_full_unstemmed Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
title_sort Epidemiologia molecular dos vírus dengue em Goiânia-GO, 1994 - 2006: vigilância laboratorial e caracterização dos sorotipos circulares
author FÉRES, Valéria Christina de Rezende
author_facet FÉRES, Valéria Christina de Rezende
author_role author
dc.contributor.advisor1.fl_str_mv MARTELLI, Celina Maria Turchi
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5867052489026059
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/8089054699896454
dc.contributor.author.fl_str_mv FÉRES, Valéria Christina de Rezende
contributor_str_mv MARTELLI, Celina Maria Turchi
dc.subject.por.fl_str_mv Vírus dengue
genótipo, epidemiologia molecular, seqüenciamento genômico
1. Vírus (Dengue) 1994-2006 Goiânia (GO) 2. Genótipos 3. Epidemiologia molecular 4. Seqüenciamento genomico
topic Vírus dengue
genótipo, epidemiologia molecular, seqüenciamento genômico
1. Vírus (Dengue) 1994-2006 Goiânia (GO) 2. Genótipos 3. Epidemiologia molecular 4. Seqüenciamento genomico
Dengue virus
genotype, molecular epidemiology, genomic sequecing
CNPQ::CIENCIAS DA SAUDE::SAUDE COLETIVA::EPIDEMIOLOGIA
dc.subject.eng.fl_str_mv Dengue virus
genotype, molecular epidemiology, genomic sequecing
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS DA SAUDE::SAUDE COLETIVA::EPIDEMIOLOGIA
description Nowadays, dengue constitute the major public health problem, because is relevant cause of illness and death between thousands people that resident in the tropical and subtropical regions in world. The dengue virus is classified as four serotypes (DENV-1, 2, 3 and 4) according to antigenic differences and characterized intra-typical groups called genotypes. The laboratorial surveillance enables the diagnostic confirmation of dengue infection and monitoring serotypes circulating through the routine diagnostic techniques. Recently, the use molecular techniques has contributed to characterize and monitoring of the genotypes potentially virulent during epidemic and knowledge of biology of dengue virus. This thesis was organized in an introduction section, that include a literature review on dengue, and two manuscripts that describing the research conducted with focus on laboratory diagnostic and molecular epidemiology. The first manuscript entitled Laboratorial Surveillance of Dengue Virus in Central-Brazil, 1994-2003, was published at Journal of Clinical Virology, 2006 37 (3): 179-83. In this study we present the results of the virological surveillance for dengue cases conducted in the city of Goiânia (~1,200,000 population) from 1994 to 2003. Suspected cases were from the main public infectious disease reference hospital and outpatient clinics covering the metropolitan area. Serological and virus isolation tests were conduced at the regional reference laboratory. Our objective was to report dengue circulating serotypes from 1994 to 2003 and the role of distinct serotypes on dengue clinical outcomes in Central Brazil and to characterize serotypes and genotypes by reverse transcriptase PCR (RT-PCR) and by restricted site-specific PCR (RSS-PCR) patterns in selected samples. Laboratory surveillance identified mainly DEN-1 serotype from 1994 to 2002 shifting to a high circulation of DEN-3 in 2003. The adults (87,4%) were the most affected group and dengue fever accounted for the majority of the cases. Diagnosis of dengue was confirmed in ~50% of the suspected and enhanced by RT-PCR. RSS-PCR patterns for DEN-1 and DEN-3 corresponded to the circulating subtypes in the country. The infection DENV-3 did not suggest a major role of infecting DEN-3 in increasing disease severity during its first-year spread in Central Brazil. The second manuscript, to be submitted for publication is entitled: Epidemiologia Molecular do Vírus Dengue tipo 3 em Goiânia GO, 2005-2006. The objective of this manuscript was to characterize the DENV-3 genotype circulating isolated from well-characterized clinical and laboratory samples in Goiânia-GO/Brasil. Seven samples had sequences of the prM/M/E region obtained and comparative analysis was performed with the reference strains. The results showed the homology of the genomics sequences with genotype III strains. The nucleotide identity of the all the samples varied from 97.0% to 99.6% and the amino acid sequences from 97.5% to 99.5%. The analysis of the nucleotide sequence revealed silent mutation and 14 amino acid changes in the protein deduced from gene prM/M/E. In conclusion, the study confirms that the strains of DENV-3 in Central Brazil relate to genotype III. The genomic changes along Domain III of the protein E were observed, which could affect the pathogenicity, but were not consistent between samples of DCC and DHF. Samples of patients with dengue fever had mutations related to viral attenuation. More investigation is necessary to evidence of genomic changes found in relationship with clinical forms.
publishDate 2008
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dc.date.available.fl_str_mv 2009-10-22
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dc.identifier.citation.fl_str_mv FÉRES, Valéria Christina de Rezende. Molecular epidemiology of dengue virus in Goiânia, 1994-2006: laboratorial surveillance and characterization of circulate serotypes. 2008. 149 f. Tese (Doutorado em Ciências da Saúde) - Universidade Federal de Goiás, Goiânia, 2008.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tde/1589
identifier_str_mv FÉRES, Valéria Christina de Rezende. Molecular epidemiology of dengue virus in Goiânia, 1994-2006: laboratorial surveillance and characterization of circulate serotypes. 2008. 149 f. Tese (Doutorado em Ciências da Saúde) - Universidade Federal de Goiás, Goiânia, 2008.
url http://repositorio.bc.ufg.br/tede/handle/tde/1589
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dc.publisher.program.fl_str_mv Doutorado em Medicina Tropical
dc.publisher.initials.fl_str_mv UFG
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dc.publisher.department.fl_str_mv Ciências da Saúde
publisher.none.fl_str_mv Universidade Federal de Goiás
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