Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)

Detalhes bibliográficos
Autor(a) principal: Oliveira, Thayssa Monize Rosa de
Data de Publicação: 2021
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/12678
Resumo: Previously found only on Old World continents, the caterpillar Helicoverpa armigera Hübner (Lepidoptera: Noctuidae) is capable of great economic damage, coming to be considered one of the most destructive agricultural pests. Its identification through morphological analysis is only possible with complex dissection of the adult male genitalia. The morphology of all phases of the life cycle, egg, larva, pupa and adult, is very similar with the morphology of other species of the genus, making the identification difficult. As it is a highly invasive pest and correct identification is the first step to be taken to decide the best management strategy, we realize the need for precise, easy and fast tools for the identification of this species. Thus, the objective of the work was to develop specific primers and to optimize different protocols for use in real-time PCR and digital PCR methodologies in order to identify H. armigera, even if this sample is of poor quality, only a fragment and/or is mixed with other species. For that, design, selection and optimization of primer and probe concentrations, primer annealing temperature gradients, tests and adaptations with different DNA extraction methods were carried out, with or without post-DNA extraction purification, tests with different ratios of H. zea and H. armigera mixed in the same reaction, determination of the maximum sensitivity in both methodologies and interpretation of the obtained data. We present the protocols developed to successfully identify the specie H. armigera, both with real-time PCR and digital PCR methodologies.
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spelling Cunha, Marcos Gomes dahttp://lattes.cnpq.br/2006008625763742Tembrock, Luke RaymondGilligan, Todd MichaelCunha, Marcos Gomes daTimm, Alicia EvaDianese, Érico de CamposCoelho, Regina Melo SartoriGodinho, Karina Cordeiro Albernazhttp://lattes.cnpq.br/2051386045777953Oliveira, Thayssa Monize Rosa de2023-03-20T15:48:58Z2023-03-20T15:48:58Z2021-05-21OLIVEIRA, T. M. R. Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae). 2021. 75 f. Tese (Doutorado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2021.http://repositorio.bc.ufg.br/tede/handle/tede/12678Previously found only on Old World continents, the caterpillar Helicoverpa armigera Hübner (Lepidoptera: Noctuidae) is capable of great economic damage, coming to be considered one of the most destructive agricultural pests. Its identification through morphological analysis is only possible with complex dissection of the adult male genitalia. The morphology of all phases of the life cycle, egg, larva, pupa and adult, is very similar with the morphology of other species of the genus, making the identification difficult. As it is a highly invasive pest and correct identification is the first step to be taken to decide the best management strategy, we realize the need for precise, easy and fast tools for the identification of this species. Thus, the objective of the work was to develop specific primers and to optimize different protocols for use in real-time PCR and digital PCR methodologies in order to identify H. armigera, even if this sample is of poor quality, only a fragment and/or is mixed with other species. For that, design, selection and optimization of primer and probe concentrations, primer annealing temperature gradients, tests and adaptations with different DNA extraction methods were carried out, with or without post-DNA extraction purification, tests with different ratios of H. zea and H. armigera mixed in the same reaction, determination of the maximum sensitivity in both methodologies and interpretation of the obtained data. We present the protocols developed to successfully identify the specie H. armigera, both with real-time PCR and digital PCR methodologies.Encontrada anteriormente apenas em continentes do Velho Mundo, a lagarta Helicoverpa armigera Hübner (Lepidoptera: Noctuidae) é capaz de grandes danos econômicos, chegando a ser considerada uma das mais destrutivas pragas agrícolas. Sua identificação por meio da análise morfológica só é possível com dissecção complexa da genitália masculina adulta. A morfologia de todas as fases do ciclo de vida, ovo, larva, pupa e adulto, é muito semelhante com a morfologia de outras espécies do gênero, dificultando a identificação. Por ser praga altamente invasiva e observando-se que a correta identificação é o primeiro passo a ser tomado para decisão da melhor estratégia de manejo, percebemos a necessidade de ferramentas precisas, fáceis e rápidas para identificação dessa espécie. Assim, o objetivo do trabalho foi desenvolver primers específicos e otimizar diferentes protocolos para utilização nas metodologias de PCR em tempo real e PCR digital de forma a identificar H. armigera, mesmo que essa amostra seja de má qualidade, apenas um fragmento e/ou esteja misturada com outras espécies. Para tanto, foram realizados desenho, seleção e otimização das concentrações dos primers e sonda, gradientes de temperatura de anelamento dos primers, testes e adaptações com diferentes métodos de extração de DNA, com ou sem purificação pós-extração, testes com diferentes taxas de DNA de H. zea e H. armigera misturados em uma mesma reação, determinação da sensibilidade máxima em ambas as metodologias e interpretação dos dados obtidos. Dessa forma, apresentamos os protocolos desenvolvidos para identificar com sucesso a espécie H. armigera, tanto na metodologia de PCR em tempo real quanto na metodologia de PCR digital.Submitted by Marlene Santos (marlene.bc.ufg@gmail.com) on 2023-03-16T17:51:58Z No. of bitstreams: 2 Tese - Thayssa Monize Rosa de Oliveira - 2021.pdf: 3251620 bytes, checksum: 065fdd1eb7dcea341756b5b8b82ce44c (MD5) license_rdf: 805 bytes, checksum: 4460e5956bc1d1639be9ae6146a50347 (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2023-03-20T15:48:57Z (GMT) No. of bitstreams: 2 Tese - Thayssa Monize Rosa de Oliveira - 2021.pdf: 3251620 bytes, checksum: 065fdd1eb7dcea341756b5b8b82ce44c (MD5) license_rdf: 805 bytes, checksum: 4460e5956bc1d1639be9ae6146a50347 (MD5)Made available in DSpace on 2023-03-20T15:48:58Z (GMT). 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dc.title.pt_BR.fl_str_mv Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
dc.title.alternative.eng.fl_str_mv Molecular identification of helicoverpa armigera (Lepidoptera: Noctuidae)
title Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
spellingShingle Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
Oliveira, Thayssa Monize Rosa de
Lagarta do velho mundo
PCR
Primers específicos
Old world bollworm
Specie-specific primers
CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE
title_short Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
title_full Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
title_fullStr Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
title_full_unstemmed Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
title_sort Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae)
author Oliveira, Thayssa Monize Rosa de
author_facet Oliveira, Thayssa Monize Rosa de
author_role author
dc.contributor.advisor1.fl_str_mv Cunha, Marcos Gomes da
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/2006008625763742
dc.contributor.advisor-co1.fl_str_mv Tembrock, Luke Raymond
dc.contributor.advisor-co2.fl_str_mv Gilligan, Todd Michael
dc.contributor.referee1.fl_str_mv Cunha, Marcos Gomes da
dc.contributor.referee2.fl_str_mv Timm, Alicia Eva
dc.contributor.referee3.fl_str_mv Dianese, Érico de Campos
dc.contributor.referee4.fl_str_mv Coelho, Regina Melo Sartori
dc.contributor.referee5.fl_str_mv Godinho, Karina Cordeiro Albernaz
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2051386045777953
dc.contributor.author.fl_str_mv Oliveira, Thayssa Monize Rosa de
contributor_str_mv Cunha, Marcos Gomes da
Tembrock, Luke Raymond
Gilligan, Todd Michael
Cunha, Marcos Gomes da
Timm, Alicia Eva
Dianese, Érico de Campos
Coelho, Regina Melo Sartori
Godinho, Karina Cordeiro Albernaz
dc.subject.por.fl_str_mv Lagarta do velho mundo
PCR
Primers específicos
topic Lagarta do velho mundo
PCR
Primers específicos
Old world bollworm
Specie-specific primers
CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE
dc.subject.eng.fl_str_mv Old world bollworm
Specie-specific primers
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE
description Previously found only on Old World continents, the caterpillar Helicoverpa armigera Hübner (Lepidoptera: Noctuidae) is capable of great economic damage, coming to be considered one of the most destructive agricultural pests. Its identification through morphological analysis is only possible with complex dissection of the adult male genitalia. The morphology of all phases of the life cycle, egg, larva, pupa and adult, is very similar with the morphology of other species of the genus, making the identification difficult. As it is a highly invasive pest and correct identification is the first step to be taken to decide the best management strategy, we realize the need for precise, easy and fast tools for the identification of this species. Thus, the objective of the work was to develop specific primers and to optimize different protocols for use in real-time PCR and digital PCR methodologies in order to identify H. armigera, even if this sample is of poor quality, only a fragment and/or is mixed with other species. For that, design, selection and optimization of primer and probe concentrations, primer annealing temperature gradients, tests and adaptations with different DNA extraction methods were carried out, with or without post-DNA extraction purification, tests with different ratios of H. zea and H. armigera mixed in the same reaction, determination of the maximum sensitivity in both methodologies and interpretation of the obtained data. We present the protocols developed to successfully identify the specie H. armigera, both with real-time PCR and digital PCR methodologies.
publishDate 2021
dc.date.issued.fl_str_mv 2021-05-21
dc.date.accessioned.fl_str_mv 2023-03-20T15:48:58Z
dc.date.available.fl_str_mv 2023-03-20T15:48:58Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv OLIVEIRA, T. M. R. Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae). 2021. 75 f. Tese (Doutorado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2021.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/12678
identifier_str_mv OLIVEIRA, T. M. R. Identificação molecular de helicoverpa armigera (Lepidoptera: Noctuidae). 2021. 75 f. Tese (Doutorado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2021.
url http://repositorio.bc.ufg.br/tede/handle/tede/12678
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http://creativecommons.org/licenses/by-nc-nd/4.0/
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rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
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dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Agronomia (EA)
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Escola de Agronomia - EA (RMG)
publisher.none.fl_str_mv Universidade Federal de Goiás
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