Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax

Detalhes bibliográficos
Autor(a) principal: Tavares, Taizy Leda
Data de Publicação: 2016
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFG
dARK ID: ark:/38995/0013000001pt6
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/6577
Resumo: Malaria is a parasitic disease caused by protozoa of the genus Plasmodium. In 2014 was registered 214 million new cases in worldwide with approximately 480,000 deaths. Brazil is responsible for about half of malaria cases that occur in America, where the main etiological agent is P. vivax. The absence of effective vaccines against malaria parasites is a serious obstacle to controlling the disease. In this context, this study aimed to identify peptides that may be candidates for the development of a vaccine against P. vivax through a immunoinformatics strategy called the Reverse Vaccinology (RV). Primarily, we track the P. falciparum proteome in search of proteins that presented predicted epitopes and were orthologs between species P. vivax and the species of malaria rodents, P. yoelli. The similarity between proteins and epitopes of the three species was quantified for excluding those that exhibited low similarity. Among this proteins, we sought in the literature which had been extensively studied and / or whether they had been vaccine candidates in previous research. For proteins that had been little studied or not evaluated, the prediction of B and T lymphocytes epitopes. Were thus identified 357 proteins of P. falciparum with predicted epitopes, among which 270 have orthologs in P. vivax and P. yoelli. Of these, fifty proteins were found to be highly similar between the three species under study, and 12 had little or no previous study. These 12 proteins were examined to Immunology Epitope Database program (IEDB) in order to implement the prediction of epitopes. Through a combinatorial analysis of the different immunoinformatics prediction methods, 7 proteins were selected as vaccine candidates, based on their function and / or location, such as export protein (EXP1), proteins expressed on the surface of the membrane (SERA) or transmembrane domain (MAEBL), or participate in processes essential for the survival of the parasite (CLAG). These proteins may be evaluated in the future biological assay constituents such as antigens in a vaccine against P. vivax parasite.
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spelling Cravo, Pedro Vitor Lemoshttp://lattes.cnpq.br/1059199347781390Cravo, Pedro Vitor Lemoshttp://lattes.cnpq.br/1059199347781390Silva, Lourival AlmeidaFernandes, Éverton Kort Kamphttp://lattes.cnpq.br/6100262431027365Tavares, Taizy Leda2016-12-13T15:41:25Z2016-05-16TAVARES, T. L. Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax. 2016. 77 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2016.http://repositorio.bc.ufg.br/tede/handle/tede/6577ark:/38995/0013000001pt6Malaria is a parasitic disease caused by protozoa of the genus Plasmodium. In 2014 was registered 214 million new cases in worldwide with approximately 480,000 deaths. Brazil is responsible for about half of malaria cases that occur in America, where the main etiological agent is P. vivax. The absence of effective vaccines against malaria parasites is a serious obstacle to controlling the disease. In this context, this study aimed to identify peptides that may be candidates for the development of a vaccine against P. vivax through a immunoinformatics strategy called the Reverse Vaccinology (RV). Primarily, we track the P. falciparum proteome in search of proteins that presented predicted epitopes and were orthologs between species P. vivax and the species of malaria rodents, P. yoelli. The similarity between proteins and epitopes of the three species was quantified for excluding those that exhibited low similarity. Among this proteins, we sought in the literature which had been extensively studied and / or whether they had been vaccine candidates in previous research. For proteins that had been little studied or not evaluated, the prediction of B and T lymphocytes epitopes. Were thus identified 357 proteins of P. falciparum with predicted epitopes, among which 270 have orthologs in P. vivax and P. yoelli. Of these, fifty proteins were found to be highly similar between the three species under study, and 12 had little or no previous study. These 12 proteins were examined to Immunology Epitope Database program (IEDB) in order to implement the prediction of epitopes. Through a combinatorial analysis of the different immunoinformatics prediction methods, 7 proteins were selected as vaccine candidates, based on their function and / or location, such as export protein (EXP1), proteins expressed on the surface of the membrane (SERA) or transmembrane domain (MAEBL), or participate in processes essential for the survival of the parasite (CLAG). These proteins may be evaluated in the future biological assay constituents such as antigens in a vaccine against P. vivax parasite.A malária é uma doença parasitária causada por protozoários do gênero Plasmodium. Em 2014 foram registrados 214 milhões de novos casos mundiais com aproximadamente 480.000 óbitos. O Brasil é responsável por cerca de metade dos casos de malária que ocorrem nas Américas, onde o principal agente etiológico é P. vivax. A ausência de vacinas eficazes contra parasitos de malária representa um sério obstáculo ao controle da doença. Nesse contexto, o presente trabalho identificou peptídeos que possam ser candidatos ao desenvolvimento de uma vacina contra P. vivax, através de uma estratégia de imunoinformática denominada de Vacinologia Reversa (VR). Primariamente, rastreamos o proteoma de P. falciparum em busca de proteínas que apresentassem epítopos preditos e fossem ortólogas entre as espécies P. vivax e a espécie de malária de roedores P. yoelli. A similaridade entre as proteínas e os epítopos das três espécies foi quantificada, visando excluir aquelas que exibissem baixa similaridade. Entre as proteínas restantes, buscamos na literatura quais já haviam sido extensivamente estudadas e/ou se já haviam sido candidatas vacinais em pesquisas anteriores. Para as proteínas que haviam sido pouco estudadas ou não avaliadas, foi realizada a predição de epítopos de linfócitos B e T. Foram assim identificadas 357 proteínas de P. falciparum com epítopos previstos, entre as quais, 270 possuíam ortólogos em P. vivax e P. yoelli. Destas, cinquenta proteínas revelaram ser altamente similares entre as três espécies em estudo, e 12 tinham poucos ou nenhum estudo anterior. Essas 12 proteínas foram submetidas ao programa Imunology Epitope Database (IEDB) no intuito de realizar a previsão de epítopos. Através de uma análise combinatória entre os diferentes métodos imunoinformáticos de previsão, 7 proteínas foram selecionadas como candidatas vacinais, com base em suas funções e/ou localização, como a proteína exportada (EXP1), proteínas expressas na superfície da membrana (SERA) ou com domínio transmembrana (MAEBL), ou ainda participam de processos essenciais para a sobrevivência do parasito (CLAG). Estas proteínas poderão ser avaliadas no futuro em ensaios biológicos como antígenos constituintes de uma vacina contra o parasito P. vivax.Submitted by JÚLIO HEBER SILVA (julioheber@yahoo.com.br) on 2016-12-07T18:56:59Z No. of bitstreams: 2 Dissertação - Taizy Leda Tavares - 2016.pdf: 1902946 bytes, checksum: dc7d3e16c692d2980b305fcdf07c397f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Jaqueline Silva (jtas29@gmail.com) on 2016-12-13T15:41:24Z (GMT) No. of bitstreams: 2 Dissertação - Taizy Leda Tavares - 2016.pdf: 1902946 bytes, checksum: dc7d3e16c692d2980b305fcdf07c397f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2016-12-13T15:41:25Z (GMT). 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dc.title.por.fl_str_mv Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
dc.title.alternative.eng.fl_str_mv Genomic reverse vaccinology strategy for identification of vaccine antigens Plasmodium vivax
title Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
spellingShingle Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
Tavares, Taizy Leda
Preditores
Malária
Vacina
Plasmodium vivax
Predictors
Malaria
Vaccine
Plasmodium vivax
CIENCIAS BIOLOGICAS
title_short Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
title_full Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
title_fullStr Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
title_full_unstemmed Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
title_sort Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax
author Tavares, Taizy Leda
author_facet Tavares, Taizy Leda
author_role author
dc.contributor.advisor1.fl_str_mv Cravo, Pedro Vitor Lemos
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/1059199347781390
dc.contributor.referee1.fl_str_mv Cravo, Pedro Vitor Lemos
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/1059199347781390
dc.contributor.referee2.fl_str_mv Silva, Lourival Almeida
dc.contributor.referee3.fl_str_mv Fernandes, Éverton Kort Kamp
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/6100262431027365
dc.contributor.author.fl_str_mv Tavares, Taizy Leda
contributor_str_mv Cravo, Pedro Vitor Lemos
Cravo, Pedro Vitor Lemos
Silva, Lourival Almeida
Fernandes, Éverton Kort Kamp
dc.subject.por.fl_str_mv Preditores
Malária
Vacina
Plasmodium vivax
topic Preditores
Malária
Vacina
Plasmodium vivax
Predictors
Malaria
Vaccine
Plasmodium vivax
CIENCIAS BIOLOGICAS
dc.subject.eng.fl_str_mv Predictors
Malaria
Vaccine
Plasmodium vivax
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS
description Malaria is a parasitic disease caused by protozoa of the genus Plasmodium. In 2014 was registered 214 million new cases in worldwide with approximately 480,000 deaths. Brazil is responsible for about half of malaria cases that occur in America, where the main etiological agent is P. vivax. The absence of effective vaccines against malaria parasites is a serious obstacle to controlling the disease. In this context, this study aimed to identify peptides that may be candidates for the development of a vaccine against P. vivax through a immunoinformatics strategy called the Reverse Vaccinology (RV). Primarily, we track the P. falciparum proteome in search of proteins that presented predicted epitopes and were orthologs between species P. vivax and the species of malaria rodents, P. yoelli. The similarity between proteins and epitopes of the three species was quantified for excluding those that exhibited low similarity. Among this proteins, we sought in the literature which had been extensively studied and / or whether they had been vaccine candidates in previous research. For proteins that had been little studied or not evaluated, the prediction of B and T lymphocytes epitopes. Were thus identified 357 proteins of P. falciparum with predicted epitopes, among which 270 have orthologs in P. vivax and P. yoelli. Of these, fifty proteins were found to be highly similar between the three species under study, and 12 had little or no previous study. These 12 proteins were examined to Immunology Epitope Database program (IEDB) in order to implement the prediction of epitopes. Through a combinatorial analysis of the different immunoinformatics prediction methods, 7 proteins were selected as vaccine candidates, based on their function and / or location, such as export protein (EXP1), proteins expressed on the surface of the membrane (SERA) or transmembrane domain (MAEBL), or participate in processes essential for the survival of the parasite (CLAG). These proteins may be evaluated in the future biological assay constituents such as antigens in a vaccine against P. vivax parasite.
publishDate 2016
dc.date.accessioned.fl_str_mv 2016-12-13T15:41:25Z
dc.date.issued.fl_str_mv 2016-05-16
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dc.identifier.citation.fl_str_mv TAVARES, T. L. Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax. 2016. 77 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2016.
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identifier_str_mv TAVARES, T. L. Estratégia genômica de vacinologia reversa para identificação de antígenos vacinais de Plasmodium vivax. 2016. 77 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2016.
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