Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers

Detalhes bibliográficos
Autor(a) principal: Mursyidin, Dindin Hidayatul
Data de Publicação: 2023
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Pesquisa Agropecuária Tropical (Online)
Texto Completo: https://revistas.ufg.br/pat/article/view/75339
Resumo: Mango and its wild relatives (Mangifera spp.) are essential for future mango breeding, including preservation programs, because they provide many beneficial genes (agronomic traits), particularly those related to resistance to biotic and abiotic stressors. However, there is a limited understanding of the genetic diversity and relationships of this germplasm. This study aimed to determine the diversity and relationship between endemic mango and its wild relatives (Mangifera spp.) from Borneo Island, Indonesia, using leaf morphology and the internal transcribed spacer (ITS) region. Fifteen samples of Mangifera, covering 12 species, were used. Morphologically, the endemic Mangifera had a low diversity of only 0.22. Based on the ITS sequence, Mangifera endemic to Borneo had a high level of genetic diversity (0.069). In addition, this sequence had a total variable number of 215 bp, of which 110 bp were singleton sites, 89 informative parsimony and 41 indels. Phylogenetic analysis showed that Mangifera was grouped into three clusters for leaf morphological traits and four clades for the ITS region. In this case, the furthest relationship was pointed out by ‘Hampalam’ (M. laurina) and ‘Tambusui’ (M. macrocarpa), as well as by ‘Rawa-Rawa’ (M. similis) and ‘Samputar’ (M. torquenda). In contrast, the closest relationship was shown by ‘Hambawang Damar’ (M. foetida) and ‘Hambawang Puntara’ (M. foetida), including ‘Samputar’ (M. torquenda) and ‘Pauh’ (M. quadrifida). In particular, the common mango (M. indica) was closely related to ‘Asam Buluh’ and ‘Hampalam’ (M. laurina) and distantly related to ‘Pauh’ (M. quadrifida) and ‘Rawa-Rawa’ (M. similis). KEYWORDS: Edible fruits, nuclear DNA, phylogenetic relationship.
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spelling Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markersDiversidade genética e relação entre a manga e seus parentes silvestres (Mangifera spp.) com base em marcadores morfológicos e molecularesMango and its wild relatives (Mangifera spp.) are essential for future mango breeding, including preservation programs, because they provide many beneficial genes (agronomic traits), particularly those related to resistance to biotic and abiotic stressors. However, there is a limited understanding of the genetic diversity and relationships of this germplasm. This study aimed to determine the diversity and relationship between endemic mango and its wild relatives (Mangifera spp.) from Borneo Island, Indonesia, using leaf morphology and the internal transcribed spacer (ITS) region. Fifteen samples of Mangifera, covering 12 species, were used. Morphologically, the endemic Mangifera had a low diversity of only 0.22. Based on the ITS sequence, Mangifera endemic to Borneo had a high level of genetic diversity (0.069). In addition, this sequence had a total variable number of 215 bp, of which 110 bp were singleton sites, 89 informative parsimony and 41 indels. Phylogenetic analysis showed that Mangifera was grouped into three clusters for leaf morphological traits and four clades for the ITS region. In this case, the furthest relationship was pointed out by ‘Hampalam’ (M. laurina) and ‘Tambusui’ (M. macrocarpa), as well as by ‘Rawa-Rawa’ (M. similis) and ‘Samputar’ (M. torquenda). In contrast, the closest relationship was shown by ‘Hambawang Damar’ (M. foetida) and ‘Hambawang Puntara’ (M. foetida), including ‘Samputar’ (M. torquenda) and ‘Pauh’ (M. quadrifida). In particular, the common mango (M. indica) was closely related to ‘Asam Buluh’ and ‘Hampalam’ (M. laurina) and distantly related to ‘Pauh’ (M. quadrifida) and ‘Rawa-Rawa’ (M. similis). KEYWORDS: Edible fruits, nuclear DNA, phylogenetic relationship.A manga e seus parentes silvestres (Mangifera spp.) são essenciais para o futuro melhoramento da fruta, incluindo programas de preservação, pois fornecem muitos genes benéficos (características agronômicas), particularmente aqueles relacionados à resistência a estressores bióticos e abióticos. No entanto, há uma compreensão limitada da diversidade genética e das relações desse germoplasma. Objetivou-se determinar a diversidade e a relação entre a manga endêmica e seus parentes silvestres (Mangifera spp.) da Ilha de Bornéu, Indonésia, utilizando-se morfologia foliar e a região do espaçador interno transcrito (ITS). Quinze amostras de Mangifera, abrangendo 12 espécies, foram utilizadas. Morfologicamente, a Mangifera endêmica apresentou uma baixa diversidade de apenas 0,22. Com base na sequência ITS, a Mangifera endêmica de Bornéu apresentou um alto nível de diversidade genética (0,069). Além disso, essa sequência tinha um número variável total de 215 pb, dos quais 110 pb eram sítios singleton, 89 informativos para parcimônia e 41 indels. A análise filogenética mostrou que a Mangifera foi aglomerada em três grupos para características morfológicas foliares e quatro clados para a região ITS. Neste caso, a relação mais distante foi apontada por ‘Hampalam’ (M. laurina) e ‘Tambusui’ (M. macrocarpa), bem como por ‘Rawa-Rawa’ (M. similis) e ‘Samputar’ (M. torquenda). Em contraste, a relação mais próxima foi mostrada por ‘Hambawang Damar’ (M. foetida) e ‘Hambawang Puntara’ (M. foetida), incluindo ‘Samputar’ (M. torquenda) e ‘Pauh’ (M. quadrifida). Particularmente, a manga comum (M. indica) estava intimamente relacionada com ‘Asam Buluh’ e ‘Hampalam’ (M. laurina) e distantemente relacionada com ‘Pauh’ (M. quadrifida) e ‘Rawa-Rawa’ (M. similis). PALAVRAS-CHAVE: Frutas comestíveis, DNA nuclear, relação filogenética.Escola de Agronomia - Universidade Federal de Goiás2023-06-16info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAvaliado por paresapplication/pdfhttps://revistas.ufg.br/pat/article/view/75339Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 53 (2023); e75339Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 53 (2023); e75339Pesquisa Agropecuária Tropical; v. 53 (2023); e753391983-4063reponame:Pesquisa Agropecuária Tropical (Online)instname:Universidade Federal de Goiás (UFG)instacron:UFGenghttps://revistas.ufg.br/pat/article/view/75339/39892Copyright (c) 2023 Pesquisa Agropecuária Tropicalinfo:eu-repo/semantics/openAccessMursyidin, Dindin Hidayatul2023-06-16T12:51:08Zoai:ojs.revistas.ufg.br:article/75339Revistahttps://revistas.ufg.br/patPUBhttps://revistas.ufg.br/pat/oaiaseleguini.pat@gmail.com||mgoes@agro.ufg.br1983-40631517-6398opendoar:2024-05-21T19:56:38.700888Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG)true
dc.title.none.fl_str_mv Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
Diversidade genética e relação entre a manga e seus parentes silvestres (Mangifera spp.) com base em marcadores morfológicos e moleculares
title Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
spellingShingle Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
Mursyidin, Dindin Hidayatul
title_short Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
title_full Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
title_fullStr Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
title_full_unstemmed Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
title_sort Genetic diversity and relationship of mango and its wild relatives (Mangifera spp.) based on morphological and molecular markers
author Mursyidin, Dindin Hidayatul
author_facet Mursyidin, Dindin Hidayatul
author_role author
dc.contributor.author.fl_str_mv Mursyidin, Dindin Hidayatul
description Mango and its wild relatives (Mangifera spp.) are essential for future mango breeding, including preservation programs, because they provide many beneficial genes (agronomic traits), particularly those related to resistance to biotic and abiotic stressors. However, there is a limited understanding of the genetic diversity and relationships of this germplasm. This study aimed to determine the diversity and relationship between endemic mango and its wild relatives (Mangifera spp.) from Borneo Island, Indonesia, using leaf morphology and the internal transcribed spacer (ITS) region. Fifteen samples of Mangifera, covering 12 species, were used. Morphologically, the endemic Mangifera had a low diversity of only 0.22. Based on the ITS sequence, Mangifera endemic to Borneo had a high level of genetic diversity (0.069). In addition, this sequence had a total variable number of 215 bp, of which 110 bp were singleton sites, 89 informative parsimony and 41 indels. Phylogenetic analysis showed that Mangifera was grouped into three clusters for leaf morphological traits and four clades for the ITS region. In this case, the furthest relationship was pointed out by ‘Hampalam’ (M. laurina) and ‘Tambusui’ (M. macrocarpa), as well as by ‘Rawa-Rawa’ (M. similis) and ‘Samputar’ (M. torquenda). In contrast, the closest relationship was shown by ‘Hambawang Damar’ (M. foetida) and ‘Hambawang Puntara’ (M. foetida), including ‘Samputar’ (M. torquenda) and ‘Pauh’ (M. quadrifida). In particular, the common mango (M. indica) was closely related to ‘Asam Buluh’ and ‘Hampalam’ (M. laurina) and distantly related to ‘Pauh’ (M. quadrifida) and ‘Rawa-Rawa’ (M. similis). KEYWORDS: Edible fruits, nuclear DNA, phylogenetic relationship.
publishDate 2023
dc.date.none.fl_str_mv 2023-06-16
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Avaliado por pares
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://revistas.ufg.br/pat/article/view/75339
url https://revistas.ufg.br/pat/article/view/75339
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistas.ufg.br/pat/article/view/75339/39892
dc.rights.driver.fl_str_mv Copyright (c) 2023 Pesquisa Agropecuária Tropical
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2023 Pesquisa Agropecuária Tropical
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Escola de Agronomia - Universidade Federal de Goiás
publisher.none.fl_str_mv Escola de Agronomia - Universidade Federal de Goiás
dc.source.none.fl_str_mv Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 53 (2023); e75339
Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 53 (2023); e75339
Pesquisa Agropecuária Tropical; v. 53 (2023); e75339
1983-4063
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instname:Universidade Federal de Goiás (UFG)
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instname_str Universidade Federal de Goiás (UFG)
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reponame_str Pesquisa Agropecuária Tropical (Online)
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repository.name.fl_str_mv Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG)
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