Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands

Detalhes bibliográficos
Autor(a) principal: Barboza, Anthony Diego Muller
Data de Publicação: 2018
Outros Autores: Pylro, Victor Satler, Jacques, Rodrigo Josemar Seminot, Gubiani, Paulo Ivonir, Quadros, Fernando Luiz Ferreira de, Trindade, Júlio Kuhn da, Triplett, Eric W., Roesch, Luiz
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/34641
Resumo: Soil microbial communities’ assembly is strongly tied to changes in temperature and moisture. Although microbial functional redundancy seems to overcome taxonomical composition changes, the sensitivity and resilience of soil microbial communities from subtropical regions in response to seasonal variations are still poorly understood. Thus, the development of new strategies for biodiversity conservation and sustainable management require a complete understanding of the soil abiotic process involved in the selection of microbial taxa and functions. In this work, we used state of the art molecular methodologies (Next Generation Sequencing) to compare the taxonomic (metataxonomics) and functional (metatranscriptomics) profiles among soil samples from two subtropical natural grasslands located in the Pampa biome, Brazil, in response to short-term seasonal variations. Our data suggest that grasslands maintained a stable microbial community membership along the year with oscillation in abundance. Apparently soil microbial taxa are more susceptible to natural climatic disturbances while functions are more stable and change with less intensity along the year. Finally, our data allow us to conclude that the most abundant microbial groups and functions were shared between seasons and locations reflecting the existence of a stable taxonomical and functional core microbiota.
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spelling Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslandsMetatranscriptomics16S rRNA geneAbiotic factorsMetataxonomicsSeasonsSoil microbial coreIon Torrent PGMNext-generation Sequencing (NGS)Subtropical ecosystemsMetataxonomicsSoil microbial communities’ assembly is strongly tied to changes in temperature and moisture. Although microbial functional redundancy seems to overcome taxonomical composition changes, the sensitivity and resilience of soil microbial communities from subtropical regions in response to seasonal variations are still poorly understood. Thus, the development of new strategies for biodiversity conservation and sustainable management require a complete understanding of the soil abiotic process involved in the selection of microbial taxa and functions. In this work, we used state of the art molecular methodologies (Next Generation Sequencing) to compare the taxonomic (metataxonomics) and functional (metatranscriptomics) profiles among soil samples from two subtropical natural grasslands located in the Pampa biome, Brazil, in response to short-term seasonal variations. Our data suggest that grasslands maintained a stable microbial community membership along the year with oscillation in abundance. Apparently soil microbial taxa are more susceptible to natural climatic disturbances while functions are more stable and change with less intensity along the year. Finally, our data allow us to conclude that the most abundant microbial groups and functions were shared between seasons and locations reflecting the existence of a stable taxonomical and functional core microbiota.PeerJ2019-06-05T20:09:07Z2019-06-05T20:09:07Z2018-06-13info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfBARBOZA, A. D. M. et al. Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands. PeerJ, [S.l.], v. 6, 2018. DOI: 10.7717/peerj.4991.http://repositorio.ufla.br/jspui/handle/1/34641PeerJreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessBarboza, Anthony Diego MullerPylro, Victor SatlerJacques, Rodrigo Josemar SeminotGubiani, Paulo IvonirQuadros, Fernando Luiz Ferreira deTrindade, Júlio Kuhn daTriplett, Eric W.Roesch, Luizeng2019-06-05T20:09:08Zoai:localhost:1/34641Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2019-06-05T20:09:08Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
title Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
spellingShingle Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
Barboza, Anthony Diego Muller
Metatranscriptomics
16S rRNA gene
Abiotic factors
Metataxonomics
Seasons
Soil microbial core
Ion Torrent PGM
Next-generation Sequencing (NGS)
Subtropical ecosystems
Metataxonomics
title_short Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
title_full Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
title_fullStr Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
title_full_unstemmed Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
title_sort Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
author Barboza, Anthony Diego Muller
author_facet Barboza, Anthony Diego Muller
Pylro, Victor Satler
Jacques, Rodrigo Josemar Seminot
Gubiani, Paulo Ivonir
Quadros, Fernando Luiz Ferreira de
Trindade, Júlio Kuhn da
Triplett, Eric W.
Roesch, Luiz
author_role author
author2 Pylro, Victor Satler
Jacques, Rodrigo Josemar Seminot
Gubiani, Paulo Ivonir
Quadros, Fernando Luiz Ferreira de
Trindade, Júlio Kuhn da
Triplett, Eric W.
Roesch, Luiz
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Barboza, Anthony Diego Muller
Pylro, Victor Satler
Jacques, Rodrigo Josemar Seminot
Gubiani, Paulo Ivonir
Quadros, Fernando Luiz Ferreira de
Trindade, Júlio Kuhn da
Triplett, Eric W.
Roesch, Luiz
dc.subject.por.fl_str_mv Metatranscriptomics
16S rRNA gene
Abiotic factors
Metataxonomics
Seasons
Soil microbial core
Ion Torrent PGM
Next-generation Sequencing (NGS)
Subtropical ecosystems
Metataxonomics
topic Metatranscriptomics
16S rRNA gene
Abiotic factors
Metataxonomics
Seasons
Soil microbial core
Ion Torrent PGM
Next-generation Sequencing (NGS)
Subtropical ecosystems
Metataxonomics
description Soil microbial communities’ assembly is strongly tied to changes in temperature and moisture. Although microbial functional redundancy seems to overcome taxonomical composition changes, the sensitivity and resilience of soil microbial communities from subtropical regions in response to seasonal variations are still poorly understood. Thus, the development of new strategies for biodiversity conservation and sustainable management require a complete understanding of the soil abiotic process involved in the selection of microbial taxa and functions. In this work, we used state of the art molecular methodologies (Next Generation Sequencing) to compare the taxonomic (metataxonomics) and functional (metatranscriptomics) profiles among soil samples from two subtropical natural grasslands located in the Pampa biome, Brazil, in response to short-term seasonal variations. Our data suggest that grasslands maintained a stable microbial community membership along the year with oscillation in abundance. Apparently soil microbial taxa are more susceptible to natural climatic disturbances while functions are more stable and change with less intensity along the year. Finally, our data allow us to conclude that the most abundant microbial groups and functions were shared between seasons and locations reflecting the existence of a stable taxonomical and functional core microbiota.
publishDate 2018
dc.date.none.fl_str_mv 2018-06-13
2019-06-05T20:09:07Z
2019-06-05T20:09:07Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv BARBOZA, A. D. M. et al. Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands. PeerJ, [S.l.], v. 6, 2018. DOI: 10.7717/peerj.4991.
http://repositorio.ufla.br/jspui/handle/1/34641
identifier_str_mv BARBOZA, A. D. M. et al. Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands. PeerJ, [S.l.], v. 6, 2018. DOI: 10.7717/peerj.4991.
url http://repositorio.ufla.br/jspui/handle/1/34641
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv PeerJ
publisher.none.fl_str_mv PeerJ
dc.source.none.fl_str_mv PeerJ
reponame:Repositório Institucional da UFLA
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Repositório Institucional da UFLA
collection Repositório Institucional da UFLA
repository.name.fl_str_mv Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv nivaldo@ufla.br || repositorio.biblioteca@ufla.br
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