Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa

Detalhes bibliográficos
Autor(a) principal: Malukiewicz, Joanna
Data de Publicação: 2021
Outros Autores: Cartwright, Reed A., Curi, Nelson H. A., Dergam, Jorge A., Igayara, Claudia S., Moreira, Silvia B., Molina, Camila V., Nicola, Patricia A., Noll, Angela, Passamani, Marcello, Pereira, Luiz C. M., Pissinatti, Alcides, Ruiz-Miranda, Carlos R., Silva, Daniel L., Stone, Anne C., Zinner, Dietmar, Roos, Christian
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/50185
Resumo: Abstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest.
id UFLA_321816c5c71d0552539494a8cb27c293
oai_identifier_str oai:localhost:1/50185
network_acronym_str UFLA
network_name_str Repositório Institucional da UFLA
repository_id_str
spelling Mitogenomic phylogeny of Callithrix with special focus on human transferred taxamtDNAMarmosetDivergenceAtlantic forestBrazilian marmosetsCallitrichidaePrimatemitochondrial DNAAbstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest.BioMed Central (BMC)2022-06-10T15:35:29Z2022-06-10T15:35:29Z2021-04-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfMALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1.http://repositorio.ufla.br/jspui/handle/1/50185BMC Genomicsreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessMalukiewicz, JoannaCartwright, Reed A.Curi, Nelson H. A.Dergam, Jorge A.Igayara, Claudia S.Moreira, Silvia B.Molina, Camila V.Nicola, Patricia A.Noll, AngelaPassamani, MarcelloPereira, Luiz C. M.Pissinatti, AlcidesRuiz-Miranda, Carlos R.Silva, Daniel L.Stone, Anne C.Zinner, DietmarRoos, Christianeng2022-06-10T15:35:30Zoai:localhost:1/50185Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2022-06-10T15:35:30Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
title Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
spellingShingle Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
Malukiewicz, Joanna
mtDNA
Marmoset
Divergence
Atlantic forest
Brazilian marmosets
Callitrichidae
Primate
mitochondrial DNA
title_short Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
title_full Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
title_fullStr Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
title_full_unstemmed Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
title_sort Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
author Malukiewicz, Joanna
author_facet Malukiewicz, Joanna
Cartwright, Reed A.
Curi, Nelson H. A.
Dergam, Jorge A.
Igayara, Claudia S.
Moreira, Silvia B.
Molina, Camila V.
Nicola, Patricia A.
Noll, Angela
Passamani, Marcello
Pereira, Luiz C. M.
Pissinatti, Alcides
Ruiz-Miranda, Carlos R.
Silva, Daniel L.
Stone, Anne C.
Zinner, Dietmar
Roos, Christian
author_role author
author2 Cartwright, Reed A.
Curi, Nelson H. A.
Dergam, Jorge A.
Igayara, Claudia S.
Moreira, Silvia B.
Molina, Camila V.
Nicola, Patricia A.
Noll, Angela
Passamani, Marcello
Pereira, Luiz C. M.
Pissinatti, Alcides
Ruiz-Miranda, Carlos R.
Silva, Daniel L.
Stone, Anne C.
Zinner, Dietmar
Roos, Christian
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Malukiewicz, Joanna
Cartwright, Reed A.
Curi, Nelson H. A.
Dergam, Jorge A.
Igayara, Claudia S.
Moreira, Silvia B.
Molina, Camila V.
Nicola, Patricia A.
Noll, Angela
Passamani, Marcello
Pereira, Luiz C. M.
Pissinatti, Alcides
Ruiz-Miranda, Carlos R.
Silva, Daniel L.
Stone, Anne C.
Zinner, Dietmar
Roos, Christian
dc.subject.por.fl_str_mv mtDNA
Marmoset
Divergence
Atlantic forest
Brazilian marmosets
Callitrichidae
Primate
mitochondrial DNA
topic mtDNA
Marmoset
Divergence
Atlantic forest
Brazilian marmosets
Callitrichidae
Primate
mitochondrial DNA
description Abstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest.
publishDate 2021
dc.date.none.fl_str_mv 2021-04-06
2022-06-10T15:35:29Z
2022-06-10T15:35:29Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv MALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1.
http://repositorio.ufla.br/jspui/handle/1/50185
identifier_str_mv MALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1.
url http://repositorio.ufla.br/jspui/handle/1/50185
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BioMed Central (BMC)
publisher.none.fl_str_mv BioMed Central (BMC)
dc.source.none.fl_str_mv BMC Genomics
reponame:Repositório Institucional da UFLA
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Repositório Institucional da UFLA
collection Repositório Institucional da UFLA
repository.name.fl_str_mv Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv nivaldo@ufla.br || repositorio.biblioteca@ufla.br
_version_ 1815438945479032832