Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFLA |
Texto Completo: | http://repositorio.ufla.br/jspui/handle/1/50185 |
Resumo: | Abstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest. |
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Mitogenomic phylogeny of Callithrix with special focus on human transferred taxamtDNAMarmosetDivergenceAtlantic forestBrazilian marmosetsCallitrichidaePrimatemitochondrial DNAAbstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest.BioMed Central (BMC)2022-06-10T15:35:29Z2022-06-10T15:35:29Z2021-04-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfMALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1.http://repositorio.ufla.br/jspui/handle/1/50185BMC Genomicsreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessMalukiewicz, JoannaCartwright, Reed A.Curi, Nelson H. A.Dergam, Jorge A.Igayara, Claudia S.Moreira, Silvia B.Molina, Camila V.Nicola, Patricia A.Noll, AngelaPassamani, MarcelloPereira, Luiz C. M.Pissinatti, AlcidesRuiz-Miranda, Carlos R.Silva, Daniel L.Stone, Anne C.Zinner, DietmarRoos, Christianeng2022-06-10T15:35:30Zoai:localhost:1/50185Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2022-06-10T15:35:30Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false |
dc.title.none.fl_str_mv |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
title |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
spellingShingle |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa Malukiewicz, Joanna mtDNA Marmoset Divergence Atlantic forest Brazilian marmosets Callitrichidae Primate mitochondrial DNA |
title_short |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
title_full |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
title_fullStr |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
title_full_unstemmed |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
title_sort |
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa |
author |
Malukiewicz, Joanna |
author_facet |
Malukiewicz, Joanna Cartwright, Reed A. Curi, Nelson H. A. Dergam, Jorge A. Igayara, Claudia S. Moreira, Silvia B. Molina, Camila V. Nicola, Patricia A. Noll, Angela Passamani, Marcello Pereira, Luiz C. M. Pissinatti, Alcides Ruiz-Miranda, Carlos R. Silva, Daniel L. Stone, Anne C. Zinner, Dietmar Roos, Christian |
author_role |
author |
author2 |
Cartwright, Reed A. Curi, Nelson H. A. Dergam, Jorge A. Igayara, Claudia S. Moreira, Silvia B. Molina, Camila V. Nicola, Patricia A. Noll, Angela Passamani, Marcello Pereira, Luiz C. M. Pissinatti, Alcides Ruiz-Miranda, Carlos R. Silva, Daniel L. Stone, Anne C. Zinner, Dietmar Roos, Christian |
author2_role |
author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Malukiewicz, Joanna Cartwright, Reed A. Curi, Nelson H. A. Dergam, Jorge A. Igayara, Claudia S. Moreira, Silvia B. Molina, Camila V. Nicola, Patricia A. Noll, Angela Passamani, Marcello Pereira, Luiz C. M. Pissinatti, Alcides Ruiz-Miranda, Carlos R. Silva, Daniel L. Stone, Anne C. Zinner, Dietmar Roos, Christian |
dc.subject.por.fl_str_mv |
mtDNA Marmoset Divergence Atlantic forest Brazilian marmosets Callitrichidae Primate mitochondrial DNA |
topic |
mtDNA Marmoset Divergence Atlantic forest Brazilian marmosets Callitrichidae Primate mitochondrial DNA |
description |
Abstract: Callithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total. Results: we report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita. Conclusion: our robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-04-06 2022-06-10T15:35:29Z 2022-06-10T15:35:29Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
MALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1. http://repositorio.ufla.br/jspui/handle/1/50185 |
identifier_str_mv |
MALUKIEWICZ, J. et al. Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa. BMC Genomics, [S.l.], v. 22, p. 1-14, Apr. 2021. DOI: 10.1186/s12864-021-07533-1. |
url |
http://repositorio.ufla.br/jspui/handle/1/50185 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
BioMed Central (BMC) |
publisher.none.fl_str_mv |
BioMed Central (BMC) |
dc.source.none.fl_str_mv |
BMC Genomics reponame:Repositório Institucional da UFLA instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
instname_str |
Universidade Federal de Lavras (UFLA) |
instacron_str |
UFLA |
institution |
UFLA |
reponame_str |
Repositório Institucional da UFLA |
collection |
Repositório Institucional da UFLA |
repository.name.fl_str_mv |
Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA) |
repository.mail.fl_str_mv |
nivaldo@ufla.br || repositorio.biblioteca@ufla.br |
_version_ |
1815438945479032832 |