In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides

Detalhes bibliográficos
Autor(a) principal: Licona, Jessica S. F.
Data de Publicação: 2022
Outros Autores: Pereira, Ingrid V., Faria, Adriana C. de, Daré, Joyce K., Cunha, Elaine F. F. da, Freitas, Matheus P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/50749
Resumo: A series of amide derivatives containing the 1,3,4-thiadiazole moiety has been recently synthesized and tested against Meloidogyne incognita (Kofold & White) Chitwood (nematode) and Xanthomonas oryzae pv. oryzae (Ishiyama) Swings, van den Mooter, Vauterin, Hoste, Gillis, Mew & Kersters (rice bacteria). We have now reported the quantitative structure-activity relationship (QSAR) modeling of these biological activities, as well as docking studies to understand the action mechanisms of these compounds. Novel agrochemical candidates were proposed based on an interplay of the substituents which most affect the biological data. The reliable and predictive models obtained from multivariate image analysis applied to QSAR (nematocidal: r2 = 0.750 and r2pred = 0.751; antibacterial: r2 = 0.650 and r2pred = 0.668) were employed to estimate the biological activities of the proposed compounds. At least two chemical candidates for each endpoint exhibited promising agrochemical performance, as the substituents R1 = CF3 or 2,4-diCl, R2 = CH2CH2Cl or CH2CH2Br, and X = SO2 demonstrated a synergistic effect on the nematocidal and antibacterial activities. The promising outcomes were supported by docking studies against the acetylcholinesterase (for M. incognita) and β-ketoacyl-acyl carrier protein synthase (for Xoo) enzymes.
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spelling In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamidesQuantitative structure-activity relationship (QSAR)DockingMolecular modelingNematodeRice bacteriaRelações estrutura-atividade quantitativasModelagem molecularNematódeosXanthomonas oryzae pv. oryzaeA series of amide derivatives containing the 1,3,4-thiadiazole moiety has been recently synthesized and tested against Meloidogyne incognita (Kofold & White) Chitwood (nematode) and Xanthomonas oryzae pv. oryzae (Ishiyama) Swings, van den Mooter, Vauterin, Hoste, Gillis, Mew & Kersters (rice bacteria). We have now reported the quantitative structure-activity relationship (QSAR) modeling of these biological activities, as well as docking studies to understand the action mechanisms of these compounds. Novel agrochemical candidates were proposed based on an interplay of the substituents which most affect the biological data. The reliable and predictive models obtained from multivariate image analysis applied to QSAR (nematocidal: r2 = 0.750 and r2pred = 0.751; antibacterial: r2 = 0.650 and r2pred = 0.668) were employed to estimate the biological activities of the proposed compounds. At least two chemical candidates for each endpoint exhibited promising agrochemical performance, as the substituents R1 = CF3 or 2,4-diCl, R2 = CH2CH2Cl or CH2CH2Br, and X = SO2 demonstrated a synergistic effect on the nematocidal and antibacterial activities. The promising outcomes were supported by docking studies against the acetylcholinesterase (for M. incognita) and β-ketoacyl-acyl carrier protein synthase (for Xoo) enzymes.Elsevier2022-07-28T19:49:06Z2022-07-28T19:49:06Z2022-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfLICONA, J. S. F. et al. In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides. Journal of Natural Pesticide Research, [S.I.], v. 1, 100003, June 2022. DOI: https://doi.org/10.1016/j.napere.2022.100003.http://repositorio.ufla.br/jspui/handle/1/50749Journal of Natural Pesticide Researchreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessLicona, Jessica S. F.Pereira, Ingrid V.Faria, Adriana C. deDaré, Joyce K.Cunha, Elaine F. F. daFreitas, Matheus P.eng2022-07-28T19:49:38Zoai:localhost:1/50749Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2022-07-28T19:49:38Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
title In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
spellingShingle In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
Licona, Jessica S. F.
Quantitative structure-activity relationship (QSAR)
Docking
Molecular modeling
Nematode
Rice bacteria
Relações estrutura-atividade quantitativas
Modelagem molecular
Nematódeos
Xanthomonas oryzae pv. oryzae
title_short In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
title_full In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
title_fullStr In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
title_full_unstemmed In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
title_sort In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides
author Licona, Jessica S. F.
author_facet Licona, Jessica S. F.
Pereira, Ingrid V.
Faria, Adriana C. de
Daré, Joyce K.
Cunha, Elaine F. F. da
Freitas, Matheus P.
author_role author
author2 Pereira, Ingrid V.
Faria, Adriana C. de
Daré, Joyce K.
Cunha, Elaine F. F. da
Freitas, Matheus P.
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Licona, Jessica S. F.
Pereira, Ingrid V.
Faria, Adriana C. de
Daré, Joyce K.
Cunha, Elaine F. F. da
Freitas, Matheus P.
dc.subject.por.fl_str_mv Quantitative structure-activity relationship (QSAR)
Docking
Molecular modeling
Nematode
Rice bacteria
Relações estrutura-atividade quantitativas
Modelagem molecular
Nematódeos
Xanthomonas oryzae pv. oryzae
topic Quantitative structure-activity relationship (QSAR)
Docking
Molecular modeling
Nematode
Rice bacteria
Relações estrutura-atividade quantitativas
Modelagem molecular
Nematódeos
Xanthomonas oryzae pv. oryzae
description A series of amide derivatives containing the 1,3,4-thiadiazole moiety has been recently synthesized and tested against Meloidogyne incognita (Kofold & White) Chitwood (nematode) and Xanthomonas oryzae pv. oryzae (Ishiyama) Swings, van den Mooter, Vauterin, Hoste, Gillis, Mew & Kersters (rice bacteria). We have now reported the quantitative structure-activity relationship (QSAR) modeling of these biological activities, as well as docking studies to understand the action mechanisms of these compounds. Novel agrochemical candidates were proposed based on an interplay of the substituents which most affect the biological data. The reliable and predictive models obtained from multivariate image analysis applied to QSAR (nematocidal: r2 = 0.750 and r2pred = 0.751; antibacterial: r2 = 0.650 and r2pred = 0.668) were employed to estimate the biological activities of the proposed compounds. At least two chemical candidates for each endpoint exhibited promising agrochemical performance, as the substituents R1 = CF3 or 2,4-diCl, R2 = CH2CH2Cl or CH2CH2Br, and X = SO2 demonstrated a synergistic effect on the nematocidal and antibacterial activities. The promising outcomes were supported by docking studies against the acetylcholinesterase (for M. incognita) and β-ketoacyl-acyl carrier protein synthase (for Xoo) enzymes.
publishDate 2022
dc.date.none.fl_str_mv 2022-07-28T19:49:06Z
2022-07-28T19:49:06Z
2022-06
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv LICONA, J. S. F. et al. In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides. Journal of Natural Pesticide Research, [S.I.], v. 1, 100003, June 2022. DOI: https://doi.org/10.1016/j.napere.2022.100003.
http://repositorio.ufla.br/jspui/handle/1/50749
identifier_str_mv LICONA, J. S. F. et al. In silico-guided proposition of potential nematocidal and antibacterial N-(1,3,4-thiadiazol-2-yl)benzamides. Journal of Natural Pesticide Research, [S.I.], v. 1, 100003, June 2022. DOI: https://doi.org/10.1016/j.napere.2022.100003.
url http://repositorio.ufla.br/jspui/handle/1/50749
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv Journal of Natural Pesticide Research
reponame:Repositório Institucional da UFLA
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
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reponame_str Repositório Institucional da UFLA
collection Repositório Institucional da UFLA
repository.name.fl_str_mv Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv nivaldo@ufla.br || repositorio.biblioteca@ufla.br
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