A computational probe for molecular environments

Detalhes bibliográficos
Autor(a) principal: Paulo Fernando Gomes Velloso
Data de Publicação: 2020
Tipo de documento: Tese
Idioma: eng
Título da fonte: Repositório Institucional da UFMG
Texto Completo: http://hdl.handle.net/1843/57903
Resumo: In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions.
id UFMG_1fbae6d9ba16bf88786ae04215178181
oai_identifier_str oai:repositorio.ufmg.br:1843/57903
network_acronym_str UFMG
network_name_str Repositório Institucional da UFMG
repository_id_str
spelling José Rachid Mohallemhttp://lattes.cnpq.br/6757643514545952Ricardo Wagner NunesJadson Cláudio BelchiorAndré Farias de MouraGinette Jalbert de Castro Fariahttp://lattes.cnpq.br/0354119376347263Paulo Fernando Gomes Velloso2023-08-17T19:33:10Z2023-08-17T19:33:10Z2020-03-20http://hdl.handle.net/1843/57903In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions.Nessa tese reportamos o uso de uma molécula virtual do tipo HD como sonda para o estudo de ambientes moleculares. A sonda tem momento de dipolo que pode ser ajustado pela modificação das massas nucleares com o uso da FNMC. Ela pode ser usada para fazer análise de ambientes moleculares, em particular, para sondar regiões polarizaveis e para calcular campos eletrostáticos moleculares, os quais são propostos como uma nova métrica para intensidade de ligações intermoleculares. Para testar a sonda, usamos sis- temas simples (hidrogênio, água, benzeno e clorobenzeno). Uma vez que a performance da sonda foi comprovada, aplicamos o método para analisar a cavidade de um par de Lewis frustrado, e contribuir para a discussão do mecanismo de ativação da molécula de hidrogênio. Nossos resultados estão de acordo com o modelo de ativação por transferên- cia de elétrons. Além disso, aplicamos o método ao estudo de dois tipos de interações intermoleculares, ligações contendo π- e σ-hole. Essas interações são criadas por regiões de potencial eletrostático positivo em moléculas, e são capazes de produzir interações não covalentes com regiões negativas, por exemplo, com pares de elétrons de moléculas contendo nitrogênio ou oxigênio. Baseado no teorema de Hellmann-Feynman, que afirma que ligações intermoleculares são completamente descritas por interações Coulombianas (eletrostática mais polarização), usamos a sonda para calcular os campos elétricos das ligações e usar como um quantificador para as interações.CNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoCAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorengUniversidade Federal de Minas GeraisPrograma de Pós-Graduação em FísicaUFMGBrasilICX - DEPARTAMENTO DE FÍSICAhttp://creativecommons.org/licenses/by-nc-nd/3.0/pt/info:eu-repo/semantics/openAccessFísica molecularCampo eletrostáticoFísico-químicaQuímica quânticaIsotopic probeMolecular interactionsMolecular physicsQuantum chemistryMolecular electrostatic fieldsMolecular electrostatic potentialPost Born-OppenheimerMolecular environmentsA computational probe for molecular environmentsUma sonda computacional para ambientes molecularesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMGORIGINALtese-2.pdftese-2.pdfapplication/pdf5943218https://repositorio.ufmg.br/bitstream/1843/57903/4/tese-2.pdf9d365bc5970a766560c1f834dc6a5cbfMD54CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8811https://repositorio.ufmg.br/bitstream/1843/57903/5/license_rdfcfd6801dba008cb6adbd9838b81582abMD55LICENSElicense.txtlicense.txttext/plain; charset=utf-82118https://repositorio.ufmg.br/bitstream/1843/57903/6/license.txtcda590c95a0b51b4d15f60c9642ca272MD561843/579032023-08-17 16:33:10.549oai:repositorio.ufmg.br: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ório de PublicaçõesPUBhttps://repositorio.ufmg.br/oaiopendoar:2023-08-17T19:33:10Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false
dc.title.pt_BR.fl_str_mv A computational probe for molecular environments
dc.title.alternative.pt_BR.fl_str_mv Uma sonda computacional para ambientes moleculares
title A computational probe for molecular environments
spellingShingle A computational probe for molecular environments
Paulo Fernando Gomes Velloso
Isotopic probe
Molecular interactions
Molecular physics
Quantum chemistry
Molecular electrostatic fields
Molecular electrostatic potential
Post Born-Oppenheimer
Molecular environments
Física molecular
Campo eletrostático
Físico-química
Química quântica
title_short A computational probe for molecular environments
title_full A computational probe for molecular environments
title_fullStr A computational probe for molecular environments
title_full_unstemmed A computational probe for molecular environments
title_sort A computational probe for molecular environments
author Paulo Fernando Gomes Velloso
author_facet Paulo Fernando Gomes Velloso
author_role author
dc.contributor.advisor1.fl_str_mv José Rachid Mohallem
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/6757643514545952
dc.contributor.referee1.fl_str_mv Ricardo Wagner Nunes
dc.contributor.referee2.fl_str_mv Jadson Cláudio Belchior
dc.contributor.referee3.fl_str_mv André Farias de Moura
dc.contributor.referee4.fl_str_mv Ginette Jalbert de Castro Faria
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/0354119376347263
dc.contributor.author.fl_str_mv Paulo Fernando Gomes Velloso
contributor_str_mv José Rachid Mohallem
Ricardo Wagner Nunes
Jadson Cláudio Belchior
André Farias de Moura
Ginette Jalbert de Castro Faria
dc.subject.por.fl_str_mv Isotopic probe
Molecular interactions
Molecular physics
Quantum chemistry
Molecular electrostatic fields
Molecular electrostatic potential
Post Born-Oppenheimer
Molecular environments
topic Isotopic probe
Molecular interactions
Molecular physics
Quantum chemistry
Molecular electrostatic fields
Molecular electrostatic potential
Post Born-Oppenheimer
Molecular environments
Física molecular
Campo eletrostático
Físico-química
Química quântica
dc.subject.other.pt_BR.fl_str_mv Física molecular
Campo eletrostático
Físico-química
Química quântica
description In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions.
publishDate 2020
dc.date.issued.fl_str_mv 2020-03-20
dc.date.accessioned.fl_str_mv 2023-08-17T19:33:10Z
dc.date.available.fl_str_mv 2023-08-17T19:33:10Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1843/57903
url http://hdl.handle.net/1843/57903
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/3.0/pt/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/3.0/pt/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Minas Gerais
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Física
dc.publisher.initials.fl_str_mv UFMG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv ICX - DEPARTAMENTO DE FÍSICA
publisher.none.fl_str_mv Universidade Federal de Minas Gerais
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFMG
instname:Universidade Federal de Minas Gerais (UFMG)
instacron:UFMG
instname_str Universidade Federal de Minas Gerais (UFMG)
instacron_str UFMG
institution UFMG
reponame_str Repositório Institucional da UFMG
collection Repositório Institucional da UFMG
bitstream.url.fl_str_mv https://repositorio.ufmg.br/bitstream/1843/57903/4/tese-2.pdf
https://repositorio.ufmg.br/bitstream/1843/57903/5/license_rdf
https://repositorio.ufmg.br/bitstream/1843/57903/6/license.txt
bitstream.checksum.fl_str_mv 9d365bc5970a766560c1f834dc6a5cbf
cfd6801dba008cb6adbd9838b81582ab
cda590c95a0b51b4d15f60c9642ca272
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)
repository.mail.fl_str_mv
_version_ 1803589491072434176