A computational probe for molecular environments
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Tipo de documento: | Tese |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFMG |
Texto Completo: | http://hdl.handle.net/1843/57903 |
Resumo: | In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions. |
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José Rachid Mohallemhttp://lattes.cnpq.br/6757643514545952Ricardo Wagner NunesJadson Cláudio BelchiorAndré Farias de MouraGinette Jalbert de Castro Fariahttp://lattes.cnpq.br/0354119376347263Paulo Fernando Gomes Velloso2023-08-17T19:33:10Z2023-08-17T19:33:10Z2020-03-20http://hdl.handle.net/1843/57903In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions.Nessa tese reportamos o uso de uma molécula virtual do tipo HD como sonda para o estudo de ambientes moleculares. A sonda tem momento de dipolo que pode ser ajustado pela modificação das massas nucleares com o uso da FNMC. Ela pode ser usada para fazer análise de ambientes moleculares, em particular, para sondar regiões polarizaveis e para calcular campos eletrostáticos moleculares, os quais são propostos como uma nova métrica para intensidade de ligações intermoleculares. Para testar a sonda, usamos sis- temas simples (hidrogênio, água, benzeno e clorobenzeno). Uma vez que a performance da sonda foi comprovada, aplicamos o método para analisar a cavidade de um par de Lewis frustrado, e contribuir para a discussão do mecanismo de ativação da molécula de hidrogênio. Nossos resultados estão de acordo com o modelo de ativação por transferên- cia de elétrons. Além disso, aplicamos o método ao estudo de dois tipos de interações intermoleculares, ligações contendo π- e σ-hole. Essas interações são criadas por regiões de potencial eletrostático positivo em moléculas, e são capazes de produzir interações não covalentes com regiões negativas, por exemplo, com pares de elétrons de moléculas contendo nitrogênio ou oxigênio. Baseado no teorema de Hellmann-Feynman, que afirma que ligações intermoleculares são completamente descritas por interações Coulombianas (eletrostática mais polarização), usamos a sonda para calcular os campos elétricos das ligações e usar como um quantificador para as interações.CNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoCAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorengUniversidade Federal de Minas GeraisPrograma de Pós-Graduação em FísicaUFMGBrasilICX - DEPARTAMENTO DE FÍSICAhttp://creativecommons.org/licenses/by-nc-nd/3.0/pt/info:eu-repo/semantics/openAccessFísica molecularCampo eletrostáticoFísico-químicaQuímica quânticaIsotopic probeMolecular interactionsMolecular physicsQuantum chemistryMolecular electrostatic fieldsMolecular electrostatic potentialPost Born-OppenheimerMolecular environmentsA computational probe for molecular environmentsUma sonda computacional para ambientes molecularesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMGORIGINALtese-2.pdftese-2.pdfapplication/pdf5943218https://repositorio.ufmg.br/bitstream/1843/57903/4/tese-2.pdf9d365bc5970a766560c1f834dc6a5cbfMD54CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8811https://repositorio.ufmg.br/bitstream/1843/57903/5/license_rdfcfd6801dba008cb6adbd9838b81582abMD55LICENSElicense.txtlicense.txttext/plain; charset=utf-82118https://repositorio.ufmg.br/bitstream/1843/57903/6/license.txtcda590c95a0b51b4d15f60c9642ca272MD561843/579032023-08-17 16:33:10.549oai:repositorio.ufmg.br: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ório de PublicaçõesPUBhttps://repositorio.ufmg.br/oaiopendoar:2023-08-17T19:33:10Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false |
dc.title.pt_BR.fl_str_mv |
A computational probe for molecular environments |
dc.title.alternative.pt_BR.fl_str_mv |
Uma sonda computacional para ambientes moleculares |
title |
A computational probe for molecular environments |
spellingShingle |
A computational probe for molecular environments Paulo Fernando Gomes Velloso Isotopic probe Molecular interactions Molecular physics Quantum chemistry Molecular electrostatic fields Molecular electrostatic potential Post Born-Oppenheimer Molecular environments Física molecular Campo eletrostático Físico-química Química quântica |
title_short |
A computational probe for molecular environments |
title_full |
A computational probe for molecular environments |
title_fullStr |
A computational probe for molecular environments |
title_full_unstemmed |
A computational probe for molecular environments |
title_sort |
A computational probe for molecular environments |
author |
Paulo Fernando Gomes Velloso |
author_facet |
Paulo Fernando Gomes Velloso |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
José Rachid Mohallem |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/6757643514545952 |
dc.contributor.referee1.fl_str_mv |
Ricardo Wagner Nunes |
dc.contributor.referee2.fl_str_mv |
Jadson Cláudio Belchior |
dc.contributor.referee3.fl_str_mv |
André Farias de Moura |
dc.contributor.referee4.fl_str_mv |
Ginette Jalbert de Castro Faria |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/0354119376347263 |
dc.contributor.author.fl_str_mv |
Paulo Fernando Gomes Velloso |
contributor_str_mv |
José Rachid Mohallem Ricardo Wagner Nunes Jadson Cláudio Belchior André Farias de Moura Ginette Jalbert de Castro Faria |
dc.subject.por.fl_str_mv |
Isotopic probe Molecular interactions Molecular physics Quantum chemistry Molecular electrostatic fields Molecular electrostatic potential Post Born-Oppenheimer Molecular environments |
topic |
Isotopic probe Molecular interactions Molecular physics Quantum chemistry Molecular electrostatic fields Molecular electrostatic potential Post Born-Oppenheimer Molecular environments Física molecular Campo eletrostático Físico-química Química quântica |
dc.subject.other.pt_BR.fl_str_mv |
Física molecular Campo eletrostático Físico-química Química quântica |
description |
In this thesis we report the use of an HD-like virtual molecule used as a probe to study molecular environments. The probe has a dipole moment which is tuned by modifying its nuclear masses using FNMC. It can be used to analyse molecular environments, in particular to probe polarisable molecular regions and to calculate molecular electrostatic fields, which we propose to be used as a new metric of intermolecular bond intensity. To test the probe we used simple systems (hydrogen, water, benzene and chlorobenzene). Once the performance of the probe was assessed, we applied it to analyse the cavity inside a frustrated Lewis pair and contribute to the discussion of the mechanism for hydrogen activation. Our results are in concordance with the electron transfer activation mecha- nism. We later applied the method to study two types of inter molecular interactions, π- and σ-hole bonds. These interactions are created by regions of positive electrostatic potential in molecules, capable of producing non-covalent interactions with negative re- gions, for example, lone pairs of molecules containing nitrogen or oxygen. Based on the Hellmann-Feynman theorem, which states that intermolecular bonds are fully described by Coulombian interactions (electrostatic plus polarisation), we used the probe to calcu- late the electric fields of the bonds and use it as a quantifier for the interactions. |
publishDate |
2020 |
dc.date.issued.fl_str_mv |
2020-03-20 |
dc.date.accessioned.fl_str_mv |
2023-08-17T19:33:10Z |
dc.date.available.fl_str_mv |
2023-08-17T19:33:10Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
format |
doctoralThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1843/57903 |
url |
http://hdl.handle.net/1843/57903 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/3.0/pt/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/3.0/pt/ |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Universidade Federal de Minas Gerais |
dc.publisher.program.fl_str_mv |
Programa de Pós-Graduação em Física |
dc.publisher.initials.fl_str_mv |
UFMG |
dc.publisher.country.fl_str_mv |
Brasil |
dc.publisher.department.fl_str_mv |
ICX - DEPARTAMENTO DE FÍSICA |
publisher.none.fl_str_mv |
Universidade Federal de Minas Gerais |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFMG instname:Universidade Federal de Minas Gerais (UFMG) instacron:UFMG |
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Universidade Federal de Minas Gerais (UFMG) |
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UFMG |
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UFMG |
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Repositório Institucional da UFMG |
collection |
Repositório Institucional da UFMG |
bitstream.url.fl_str_mv |
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