Feasibility of computational vision in the genetic improvement of sweet potato root production

Detalhes bibliográficos
Autor(a) principal: Ana Clara Gonçalves Fernandes
Data de Publicação: 2022
Outros Autores: Nermy Ribeiro Valadares, Clóvis Henrique Oliveira Rodrigues, Rayane Aguiar Alves, Lis Lorena Melúcio Guedes, Jailson Ramos Magalhães, Rafael Bolina da Silva, Luan Souza de Paula Gomes, Alcinei Místico Azevedo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFMG
Texto Completo: https://doi.org/10.1590/s0102-0536-20220405
http://hdl.handle.net/1843/59821
https://orcid.org/0000-0002-8161-8130
https://orcid.org/0000-0001-7854-8111
https://orcid.org/0000-0001-6756-7835
https://orcid.org/0000-0002-1614-3239
https://orcid.org/0000-0002-2592-0677
https://orcid.org/0000-0002-0367-5607
https://orcid.org/0000-0001-8958-9808
https://orcid.org/0000-0003-2029-562X
https://orcid.org/0000-0001-5196-0851
Resumo: The improvement of sweet potato is a costly job due to the large number of characteristics to be analyzed for the selection of the best genotypes, making it necessary to adopt new technologies, such as the use of images, associated with the phenotyping process. The objective of this research was to develop a methodology for the phenotyping of the root production aiming genetic improvement of half-sib sweet potato progenies through computational analysis of images and to compare its performance to the traditional methodology of evaluation. Sixteen half-sib sweet potato families in a randomized block design with 4 replications were evaluated. At plant level, the weight per root and the total number of roots were evaluated. The images were acquired in a “studio” made of mdf with a digital camera model Canon PowerShotSX400 IS, under artificial lighting. The evaluations were carried out using the R software, where a second-degree polynomial regression model was fitted to predict the root weight (in grams) and the genetic values and expected gains were obtained. It was possible to predict the root weight at plant and plot level, obtaining high coefficients of determination between the predicted and observed weight. Computer vision allowed the prediction of root weight, maintaining the genotype ranking and consequently the similarity between the expected gains with the selection. Thus, the use of images is an efficient tool for sweet potato genetic improvement programs, assisting in the crop phenotyping process.
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spelling 2023-10-20T20:03:50Z2023-10-20T20:03:50Z2022404378383https://doi.org/10.1590/s0102-0536-202204051806-9991http://hdl.handle.net/1843/59821https://orcid.org/0000-0002-8161-8130https://orcid.org/0000-0001-7854-8111https://orcid.org/0000-0001-6756-7835https://orcid.org/0000-0002-1614-3239https://orcid.org/0000-0002-2592-0677https://orcid.org/0000-0002-0367-5607https://orcid.org/0000-0001-8958-9808https://orcid.org/0000-0003-2029-562Xhttps://orcid.org/0000-0001-5196-0851The improvement of sweet potato is a costly job due to the large number of characteristics to be analyzed for the selection of the best genotypes, making it necessary to adopt new technologies, such as the use of images, associated with the phenotyping process. The objective of this research was to develop a methodology for the phenotyping of the root production aiming genetic improvement of half-sib sweet potato progenies through computational analysis of images and to compare its performance to the traditional methodology of evaluation. Sixteen half-sib sweet potato families in a randomized block design with 4 replications were evaluated. At plant level, the weight per root and the total number of roots were evaluated. The images were acquired in a “studio” made of mdf with a digital camera model Canon PowerShotSX400 IS, under artificial lighting. The evaluations were carried out using the R software, where a second-degree polynomial regression model was fitted to predict the root weight (in grams) and the genetic values and expected gains were obtained. It was possible to predict the root weight at plant and plot level, obtaining high coefficients of determination between the predicted and observed weight. Computer vision allowed the prediction of root weight, maintaining the genotype ranking and consequently the similarity between the expected gains with the selection. Thus, the use of images is an efficient tool for sweet potato genetic improvement programs, assisting in the crop phenotyping process.O melhoramento da batata-doce é um trabalho oneroso em decorrência do grande número de características analisadas para a seleção dos melhores genótipos, fazendo-se necessária a adoção de novas tecnologias, como o uso de imagens, associadas ao processo de fenotipagem. Objetivou-se desenvolver uma metodologia para a fenotipagem da produção de raízes para o melhoramento genético de progênies de meios irmãos de batata-doce por meio da análise computacional de imagens e comparar seu desempenho com a metodologia tradicional de avaliação. Foram avaliadas 16 famílias de meios irmãos de batata-doce em delineamento de blocos casualizados com 4 repetições. Avaliou-se a nível de plantas o peso por raiz. As imagens foram adquiridas em um “estúdio” feito com mdf com uma câmera digital modelo Canon PowerShotSX400 IS, sob iluminação artificial. As avaliações foram realizadas no software R, onde para a predição do peso das raízes (em gramas) foi ajustado um modelo de regressão polinomial de segundo grau e foram obtidos os valores genéticos e ganhos esperados. Foi possível predizer o peso das raízes a nível de plantas e de parcelas, obtendo altos coeficientes de determinação entre o peso predito e observado. A visão computacional permitiu a predição do peso das raízes, mantendo o ranqueamento dos genótipos e consequentemente a similaridade entre os ganhos esperados com a seleção. Assim, o uso de imagens é uma ferramenta eficiente para programas de melhoramento genético da batata-doce, auxiliando no processo de fenotipagem da cultura.CNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoFAPEMIG - Fundação de Amparo à Pesquisa do Estado de Minas GeraisCAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorengUniversidade Federal de Minas GeraisUFMGBrasilICA - INSTITUTO DE CIÊNCIAS AGRÁRIASHorticultura BrasileiraBatata-doceGenética vegetalMelhoramento genéticoAnálise de imagemFeasibility of computational vision in the genetic improvement of sweet potato root productionViabilidade da visão computacional no melhoramento genético na produção de raízes de batata-doceinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://www.scielo.br/j/hb/a/Gj6QyQkqQtyfnXKDXK3MVRv/?format=pdf&lang=enAna Clara Gonçalves FernandesNermy Ribeiro ValadaresClóvis Henrique Oliveira RodriguesRayane Aguiar AlvesLis Lorena Melúcio GuedesJailson Ramos MagalhãesRafael Bolina da SilvaLuan Souza de Paula GomesAlcinei Místico Azevedoinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMGLICENSELicense.txtLicense.txttext/plain; charset=utf-82042https://repositorio.ufmg.br/bitstream/1843/59821/1/License.txtfa505098d172de0bc8864fc1287ffe22MD51ORIGINALFeasibility of computational vision in the genetic improvement of sweet potato root production.pdfFeasibility of computational vision in the genetic improvement of sweet potato root production.pdfapplication/pdf957757https://repositorio.ufmg.br/bitstream/1843/59821/2/Feasibility%20of%20computational%20vision%20in%20the%20genetic%20improvement%20of%20sweet%20potato%20root%20production.pdff5e2c42074a15d81e5a8bdfb5568f37cMD521843/598212023-10-23 16:51:59.565oai:repositorio.ufmg.br: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Repositório de PublicaçõesPUBhttps://repositorio.ufmg.br/oaiopendoar:2023-10-23T19:51:59Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false
dc.title.pt_BR.fl_str_mv Feasibility of computational vision in the genetic improvement of sweet potato root production
dc.title.alternative.pt_BR.fl_str_mv Viabilidade da visão computacional no melhoramento genético na produção de raízes de batata-doce
title Feasibility of computational vision in the genetic improvement of sweet potato root production
spellingShingle Feasibility of computational vision in the genetic improvement of sweet potato root production
Ana Clara Gonçalves Fernandes
Batata-doce
Genética vegetal
Melhoramento genético
Análise de imagem
title_short Feasibility of computational vision in the genetic improvement of sweet potato root production
title_full Feasibility of computational vision in the genetic improvement of sweet potato root production
title_fullStr Feasibility of computational vision in the genetic improvement of sweet potato root production
title_full_unstemmed Feasibility of computational vision in the genetic improvement of sweet potato root production
title_sort Feasibility of computational vision in the genetic improvement of sweet potato root production
author Ana Clara Gonçalves Fernandes
author_facet Ana Clara Gonçalves Fernandes
Nermy Ribeiro Valadares
Clóvis Henrique Oliveira Rodrigues
Rayane Aguiar Alves
Lis Lorena Melúcio Guedes
Jailson Ramos Magalhães
Rafael Bolina da Silva
Luan Souza de Paula Gomes
Alcinei Místico Azevedo
author_role author
author2 Nermy Ribeiro Valadares
Clóvis Henrique Oliveira Rodrigues
Rayane Aguiar Alves
Lis Lorena Melúcio Guedes
Jailson Ramos Magalhães
Rafael Bolina da Silva
Luan Souza de Paula Gomes
Alcinei Místico Azevedo
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ana Clara Gonçalves Fernandes
Nermy Ribeiro Valadares
Clóvis Henrique Oliveira Rodrigues
Rayane Aguiar Alves
Lis Lorena Melúcio Guedes
Jailson Ramos Magalhães
Rafael Bolina da Silva
Luan Souza de Paula Gomes
Alcinei Místico Azevedo
dc.subject.other.pt_BR.fl_str_mv Batata-doce
Genética vegetal
Melhoramento genético
Análise de imagem
topic Batata-doce
Genética vegetal
Melhoramento genético
Análise de imagem
description The improvement of sweet potato is a costly job due to the large number of characteristics to be analyzed for the selection of the best genotypes, making it necessary to adopt new technologies, such as the use of images, associated with the phenotyping process. The objective of this research was to develop a methodology for the phenotyping of the root production aiming genetic improvement of half-sib sweet potato progenies through computational analysis of images and to compare its performance to the traditional methodology of evaluation. Sixteen half-sib sweet potato families in a randomized block design with 4 replications were evaluated. At plant level, the weight per root and the total number of roots were evaluated. The images were acquired in a “studio” made of mdf with a digital camera model Canon PowerShotSX400 IS, under artificial lighting. The evaluations were carried out using the R software, where a second-degree polynomial regression model was fitted to predict the root weight (in grams) and the genetic values and expected gains were obtained. It was possible to predict the root weight at plant and plot level, obtaining high coefficients of determination between the predicted and observed weight. Computer vision allowed the prediction of root weight, maintaining the genotype ranking and consequently the similarity between the expected gains with the selection. Thus, the use of images is an efficient tool for sweet potato genetic improvement programs, assisting in the crop phenotyping process.
publishDate 2022
dc.date.issued.fl_str_mv 2022
dc.date.accessioned.fl_str_mv 2023-10-20T20:03:50Z
dc.date.available.fl_str_mv 2023-10-20T20:03:50Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1843/59821
dc.identifier.doi.pt_BR.fl_str_mv https://doi.org/10.1590/s0102-0536-20220405
dc.identifier.issn.pt_BR.fl_str_mv 1806-9991
dc.identifier.orcid.pt_BR.fl_str_mv https://orcid.org/0000-0002-8161-8130
https://orcid.org/0000-0001-7854-8111
https://orcid.org/0000-0001-6756-7835
https://orcid.org/0000-0002-1614-3239
https://orcid.org/0000-0002-2592-0677
https://orcid.org/0000-0002-0367-5607
https://orcid.org/0000-0001-8958-9808
https://orcid.org/0000-0003-2029-562X
https://orcid.org/0000-0001-5196-0851
url https://doi.org/10.1590/s0102-0536-20220405
http://hdl.handle.net/1843/59821
https://orcid.org/0000-0002-8161-8130
https://orcid.org/0000-0001-7854-8111
https://orcid.org/0000-0001-6756-7835
https://orcid.org/0000-0002-1614-3239
https://orcid.org/0000-0002-2592-0677
https://orcid.org/0000-0002-0367-5607
https://orcid.org/0000-0001-8958-9808
https://orcid.org/0000-0003-2029-562X
https://orcid.org/0000-0001-5196-0851
identifier_str_mv 1806-9991
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.none.fl_str_mv Horticultura Brasileira
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Minas Gerais
dc.publisher.initials.fl_str_mv UFMG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv ICA - INSTITUTO DE CIÊNCIAS AGRÁRIAS
publisher.none.fl_str_mv Universidade Federal de Minas Gerais
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFMG
instname:Universidade Federal de Minas Gerais (UFMG)
instacron:UFMG
instname_str Universidade Federal de Minas Gerais (UFMG)
instacron_str UFMG
institution UFMG
reponame_str Repositório Institucional da UFMG
collection Repositório Institucional da UFMG
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