Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania

Detalhes bibliográficos
Autor(a) principal: Sousa, Natália Ferreira de
Data de Publicação: 2020
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFPB
Texto Completo: https://repositorio.ufpb.br/jspui/handle/123456789/18720
Resumo: Neglected tropical diseases are characterized as a group of 17 communicable diseases, caused by parasitic agents that prevail in regions of tropical and subtropical climate and reach estimates of 500 thousand cases per year. Leishmaniasis is an infectious pathology caused by protozoa of the genus Leishmania sp belonging to the Trypanosomatidae family. The drugs available for treatment have many related drawbacks. Possible therapeutic alternatives include organoselenium compounds, since selenium represents an essential trace element in the biological functions and nutrition of living beings, and to date, countless activities and applications of these bioactive agents have been reported. As alternatives for obtaining the results, the Computer Aided Drug Designer (CADD) Development Methods are mentioned, which represent fast, effective and affordable alternatives that guarantee greater targeting and practicality. to the developed study. In this perspective, the present study aimed to perform the virtual screening of synthetic derivatives of selenoethylenolacticamides as potential activities for the protozoa Leishmania infantum and Leishmania amazonensis. To obtain the results, 8 prediction models were elaborated regarding the amstigote and promastigote forms of the organisms under study. The data sets were obtained from the ChEMBL database, the compounds being classified according to the pIC50 values, to generate and validate the model using the Random Forest algorithm, in addition, a consensus analysis was performed between the models analyzed. Molecular docking simulations were performed using the Molegro Virtual Docking software and two proteins obtained from the Protein Data Bank were used and the remaining six were built by homology. In addition, a simple pharmacophoric study with principal component analyzes (PCA) and consensus (CPCA), finally, parameters related to bioavailability such as oral absorption and violations of the Lipinski rule were evaluated, in addition to toxicity assessments, and the most likely molecules were selected for organic synthesis. The consensus models developed, with the exception of the model for the amastigote form of L. amazonensis, allowed the classification of molecules with probabilities above 60%, corresponding respectively to L. infantum in the selection of 22 molecules for the amastigote form, for the form promastigote the number corresponded to 28 compounds, and for L. amazonensis the number corresponded to 26 molecules. The molecular docking analyzes performed were favorable, demonstrating that the selected compounds interacted with the selected enzymes, since all of them presented negative energies, and for L. infantum the molecules 27 and 28 showed multitarget potential, as they obtained lower energies than the ligands. The analyzes of CPCA and PCA identified that the most representative groups of descriptors correspond to OH2 and LOGS, these descriptors are related to water solubility. Regarding absorption, this was higher than 60% indicating that the compounds have high rates of oral absorption, as well as a good availability, since in most compounds only one violation of the rule was registered. In the toxicity assessment, only seven compounds showed signs of toxicity in up to one or two parameters. The methodology used was effective and showed good reproducibility, since it allowed the selection of 16 compounds that were synthesized and are under biological testing.
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spelling Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmaniaLeishmanioseSelenoetilenolacticamidasCADDSíntese orgânicaLeishmaniasisSelenoethylenolacticamidesOrganic synthesisCNPQ::CIENCIAS BIOLOGICAS::FARMACOLOGIANeglected tropical diseases are characterized as a group of 17 communicable diseases, caused by parasitic agents that prevail in regions of tropical and subtropical climate and reach estimates of 500 thousand cases per year. Leishmaniasis is an infectious pathology caused by protozoa of the genus Leishmania sp belonging to the Trypanosomatidae family. The drugs available for treatment have many related drawbacks. Possible therapeutic alternatives include organoselenium compounds, since selenium represents an essential trace element in the biological functions and nutrition of living beings, and to date, countless activities and applications of these bioactive agents have been reported. As alternatives for obtaining the results, the Computer Aided Drug Designer (CADD) Development Methods are mentioned, which represent fast, effective and affordable alternatives that guarantee greater targeting and practicality. to the developed study. In this perspective, the present study aimed to perform the virtual screening of synthetic derivatives of selenoethylenolacticamides as potential activities for the protozoa Leishmania infantum and Leishmania amazonensis. To obtain the results, 8 prediction models were elaborated regarding the amstigote and promastigote forms of the organisms under study. The data sets were obtained from the ChEMBL database, the compounds being classified according to the pIC50 values, to generate and validate the model using the Random Forest algorithm, in addition, a consensus analysis was performed between the models analyzed. Molecular docking simulations were performed using the Molegro Virtual Docking software and two proteins obtained from the Protein Data Bank were used and the remaining six were built by homology. In addition, a simple pharmacophoric study with principal component analyzes (PCA) and consensus (CPCA), finally, parameters related to bioavailability such as oral absorption and violations of the Lipinski rule were evaluated, in addition to toxicity assessments, and the most likely molecules were selected for organic synthesis. The consensus models developed, with the exception of the model for the amastigote form of L. amazonensis, allowed the classification of molecules with probabilities above 60%, corresponding respectively to L. infantum in the selection of 22 molecules for the amastigote form, for the form promastigote the number corresponded to 28 compounds, and for L. amazonensis the number corresponded to 26 molecules. The molecular docking analyzes performed were favorable, demonstrating that the selected compounds interacted with the selected enzymes, since all of them presented negative energies, and for L. infantum the molecules 27 and 28 showed multitarget potential, as they obtained lower energies than the ligands. The analyzes of CPCA and PCA identified that the most representative groups of descriptors correspond to OH2 and LOGS, these descriptors are related to water solubility. Regarding absorption, this was higher than 60% indicating that the compounds have high rates of oral absorption, as well as a good availability, since in most compounds only one violation of the rule was registered. In the toxicity assessment, only seven compounds showed signs of toxicity in up to one or two parameters. The methodology used was effective and showed good reproducibility, since it allowed the selection of 16 compounds that were synthesized and are under biological testing.Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqAs doenças tropicais negligenciadas caracterizam-se como um grupo de 17 enfermidades transmissíveis, causadas por agentes parasitários que prevalecem em regiões de clima tropical e subtropical e alcançam estimativas de 500 mil casos por ano. A Leishmaniose, é uma patologia infecciosa causada por protozoários do gênero Leishmania sp. pertencentes a família Trypanosomatidae. Os medicamentos disponíveis para tratamento apresentam muitos inconvenientes relacionados. Como possíveis alternativas terapêuticas figuram os compostos de organosselênio, visto que o selênio representa um elemento traço essencial as funções biológicas e nutrição dos seres vivos, e até o presente momento são relatados inúmeras atividades e aplicações destes bioativos. Como alternativas para a obtenção dos resultados, menciona-se os métodos de Desenvolvimento de Drogas Assistidos por Computador (do inglês, Computer Aided Drug Designer - CADD), os quais representam alternativas rápidas, eficazes e de custo acessível que garantem um maior direcionamento e praticidade ao estudo desenvolvido. Nessa perspectiva, o presente estudo objetivou realizar a triagem virtual de derivados sintéticos de selenoetilenolacticamidas como potenciais atividades para os protozoários Leishmania infantum e Leishmania amazonensis. Para obtenção dos resultados foram elaborados 8 modelos de predições referentes as formas amastigota e promastigota dos organismos em estudo. Os conjuntos de dados foram obtidos na base de dados ChEMBL, sendo os compostos classificados de acordo com os valores de pIC50, para gerar e validar o modelo utilizando o algoritmo Random Forest, além disso, foi realizado análise de consenso entre os modelos analisados. As simulações de docking molecular foram realizadas no software Molegro Virtual Docker e foram utilizadas duas proteínas obtidas no Protein Data Bank e as seis restantes foram construídas por homologia, além disso, realizou-se um estudo farmacofórico simples com análises de componentes principais (PCA) e consenso (CPCA), por fim foram avaliados parâmetros relacionados a biodisponibilidade como absorção por via oral e violações a regra de Lipinski, além de avaliações da toxicidade, e as moléculas de maior probabilidade foram selecionas para a síntese orgânica. Os modelos de consenso elaborados, com exceção do modelo para a forma amastigota da L. amazonensis, permitiram a classificação de moléculas com probabilidades acima de 60%, correspondendo respectivamente para a L. infantum na seleção de 22 moléculas para a forma amastigota, para a forma promastigota o númeo correspondeu a 28 compostos, e para a L. amazonensis o número correspondeu a 26 moléculas. As análises de docking molecular realizadas foram favoráveis demonstrando que os compostos selecionados interagiram com as enzimas selecionadas, visto que todos apresentaram energias negativas, sendo que para a L. infantum as moléculas 27 e 28 apresentaram potencial multitarget, pois obtiveram energias menores que os ligantes. As análises de CPCA e PCA identificaram que os grupos de descritores mais representativos correspondem ao OH2 e LOGS, sendo estes descritores relacionados a hidrossolubilidade. Em relação a absorção, esta foi superior a 60% indicando que os compostos apresentam altas taxas de absorção por via oral, como também uma boa disponibilidade, visto que, na maioria dos compostos foi registrada a ocorrência de apenas 1 violação a regra. Na avaliação de toxicidade apenas sete compostos apresentaram indícios de toxicidade em até um ou dois parâmetros. A metodologia utilizada foi eficaz e apresentou uma boa reprodutibilidade, visto que permitiu a seleção de 16 compostos que foram sintetizados e encontram-se sob teste biológicos.Universidade Federal da ParaíbaBrasilFarmacologiaPrograma de Pós-Graduação em Produtos Naturais e Sintéticos BioativosUFPBScotti, Marcus Tulliushttp://lattes.cnpq.br/9312500923026323Sousa, Natália Ferreira de2020-12-13T19:57:34Z2021-02-272020-12-13T19:57:34Z2020-02-27info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesishttps://repositorio.ufpb.br/jspui/handle/123456789/18720porhttp://creativecommons.org/licenses/by-nd/3.0/br/info:eu-repo/semantics/embargoedAccessreponame:Biblioteca Digital de Teses e Dissertações da UFPBinstname:Universidade Federal da Paraíba (UFPB)instacron:UFPB2021-09-02T23:33:09Zoai:repositorio.ufpb.br:123456789/18720Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufpb.br/PUBhttp://tede.biblioteca.ufpb.br:8080/oai/requestdiretoria@ufpb.br|| diretoria@ufpb.bropendoar:2021-09-02T23:33:09Biblioteca Digital de Teses e Dissertações da UFPB - Universidade Federal da Paraíba (UFPB)false
dc.title.none.fl_str_mv Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
title Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
spellingShingle Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
Sousa, Natália Ferreira de
Leishmaniose
Selenoetilenolacticamidas
CADD
Síntese orgânica
Leishmaniasis
Selenoethylenolacticamides
Organic synthesis
CNPQ::CIENCIAS BIOLOGICAS::FARMACOLOGIA
title_short Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
title_full Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
title_fullStr Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
title_full_unstemmed Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
title_sort Triagem virtual de selenoetilenolacticamidas e narilpropanamidas com potencial atividade antileishmania
author Sousa, Natália Ferreira de
author_facet Sousa, Natália Ferreira de
author_role author
dc.contributor.none.fl_str_mv Scotti, Marcus Tullius
http://lattes.cnpq.br/9312500923026323
dc.contributor.author.fl_str_mv Sousa, Natália Ferreira de
dc.subject.por.fl_str_mv Leishmaniose
Selenoetilenolacticamidas
CADD
Síntese orgânica
Leishmaniasis
Selenoethylenolacticamides
Organic synthesis
CNPQ::CIENCIAS BIOLOGICAS::FARMACOLOGIA
topic Leishmaniose
Selenoetilenolacticamidas
CADD
Síntese orgânica
Leishmaniasis
Selenoethylenolacticamides
Organic synthesis
CNPQ::CIENCIAS BIOLOGICAS::FARMACOLOGIA
description Neglected tropical diseases are characterized as a group of 17 communicable diseases, caused by parasitic agents that prevail in regions of tropical and subtropical climate and reach estimates of 500 thousand cases per year. Leishmaniasis is an infectious pathology caused by protozoa of the genus Leishmania sp belonging to the Trypanosomatidae family. The drugs available for treatment have many related drawbacks. Possible therapeutic alternatives include organoselenium compounds, since selenium represents an essential trace element in the biological functions and nutrition of living beings, and to date, countless activities and applications of these bioactive agents have been reported. As alternatives for obtaining the results, the Computer Aided Drug Designer (CADD) Development Methods are mentioned, which represent fast, effective and affordable alternatives that guarantee greater targeting and practicality. to the developed study. In this perspective, the present study aimed to perform the virtual screening of synthetic derivatives of selenoethylenolacticamides as potential activities for the protozoa Leishmania infantum and Leishmania amazonensis. To obtain the results, 8 prediction models were elaborated regarding the amstigote and promastigote forms of the organisms under study. The data sets were obtained from the ChEMBL database, the compounds being classified according to the pIC50 values, to generate and validate the model using the Random Forest algorithm, in addition, a consensus analysis was performed between the models analyzed. Molecular docking simulations were performed using the Molegro Virtual Docking software and two proteins obtained from the Protein Data Bank were used and the remaining six were built by homology. In addition, a simple pharmacophoric study with principal component analyzes (PCA) and consensus (CPCA), finally, parameters related to bioavailability such as oral absorption and violations of the Lipinski rule were evaluated, in addition to toxicity assessments, and the most likely molecules were selected for organic synthesis. The consensus models developed, with the exception of the model for the amastigote form of L. amazonensis, allowed the classification of molecules with probabilities above 60%, corresponding respectively to L. infantum in the selection of 22 molecules for the amastigote form, for the form promastigote the number corresponded to 28 compounds, and for L. amazonensis the number corresponded to 26 molecules. The molecular docking analyzes performed were favorable, demonstrating that the selected compounds interacted with the selected enzymes, since all of them presented negative energies, and for L. infantum the molecules 27 and 28 showed multitarget potential, as they obtained lower energies than the ligands. The analyzes of CPCA and PCA identified that the most representative groups of descriptors correspond to OH2 and LOGS, these descriptors are related to water solubility. Regarding absorption, this was higher than 60% indicating that the compounds have high rates of oral absorption, as well as a good availability, since in most compounds only one violation of the rule was registered. In the toxicity assessment, only seven compounds showed signs of toxicity in up to one or two parameters. The methodology used was effective and showed good reproducibility, since it allowed the selection of 16 compounds that were synthesized and are under biological testing.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-13T19:57:34Z
2020-12-13T19:57:34Z
2020-02-27
2021-02-27
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.ufpb.br/jspui/handle/123456789/18720
url https://repositorio.ufpb.br/jspui/handle/123456789/18720
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language por
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info:eu-repo/semantics/embargoedAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nd/3.0/br/
eu_rights_str_mv embargoedAccess
dc.publisher.none.fl_str_mv Universidade Federal da Paraíba
Brasil
Farmacologia
Programa de Pós-Graduação em Produtos Naturais e Sintéticos Bioativos
UFPB
publisher.none.fl_str_mv Universidade Federal da Paraíba
Brasil
Farmacologia
Programa de Pós-Graduação em Produtos Naturais e Sintéticos Bioativos
UFPB
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