Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation

Detalhes bibliográficos
Autor(a) principal: Veto, Nicole Moreira
Data de Publicação: 2020
Outros Autores: Guzman, Frank, Kulcheski, Franceli Rodrigues, Segatto, Ana Lúcia Anversa, Lacerda, Maria Eduarda Gonçalves, Margis, Rogerio, Zolet, Andreia Carina Turchetto
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/266302
Resumo: Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explored. Our goal was to provide genomic information for these morphotypes to understand the molecular mechanisms of differences in fruit colour in this species. In this study, we performed a comparative transcriptome analysis of red and yellow morphotypes of P. cattleyanum, considering two stages of fruit ripening. The transcriptomic analysis performed encompassing leaves, unripe and ripe fruits, in triplicate for each morphotype. The transcriptome consensus from each morphotype showed 301,058 and 298,310 contigs from plants with yellow and red fruits, respectively. The differential expression revealed important genes that were involved in anthocyanins biosynthesis, such as the anthocyanidin synthase (ANS) and UDP-glucose:flavonoid-o-glucosyltransferase (UFGT) that were differentially regulated during fruit ripening. This study reveals stimulating data for the understanding of the pathways and mechanisms involved in the maturation and colouring of P. cattleyanum fruits and suggests that the ANS and UFGT genes are key factors involved in the synthase and pigmentation accumulation in red fruits.
id UFRGS-2_0d4b09a5847d616322354945ac41e63c
oai_identifier_str oai:www.lume.ufrgs.br:10183/266302
network_acronym_str UFRGS-2
network_name_str Repositório Institucional da UFRGS
repository_id_str
spelling Veto, Nicole MoreiraGuzman, FrankKulcheski, Franceli RodriguesSegatto, Ana Lúcia AnversaLacerda, Maria Eduarda GonçalvesMargis, RogerioZolet, Andreia Carina Turchetto2023-10-26T03:39:44Z20201415-4757http://hdl.handle.net/10183/266302001153298Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explored. Our goal was to provide genomic information for these morphotypes to understand the molecular mechanisms of differences in fruit colour in this species. In this study, we performed a comparative transcriptome analysis of red and yellow morphotypes of P. cattleyanum, considering two stages of fruit ripening. The transcriptomic analysis performed encompassing leaves, unripe and ripe fruits, in triplicate for each morphotype. The transcriptome consensus from each morphotype showed 301,058 and 298,310 contigs from plants with yellow and red fruits, respectively. The differential expression revealed important genes that were involved in anthocyanins biosynthesis, such as the anthocyanidin synthase (ANS) and UDP-glucose:flavonoid-o-glucosyltransferase (UFGT) that were differentially regulated during fruit ripening. This study reveals stimulating data for the understanding of the pathways and mechanisms involved in the maturation and colouring of P. cattleyanum fruits and suggests that the ANS and UFGT genes are key factors involved in the synthase and pigmentation accumulation in red fruits.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 43, n. 2 (2020), 11 p.AntocianinaCarotenóidesMata AtlânticaFruit ripeningMyrtaceaeTranscriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentationinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001153298.pdf.txt001153298.pdf.txtExtracted Texttext/plain48444http://www.lume.ufrgs.br/bitstream/10183/266302/2/001153298.pdf.txta0aaec0c83545e619de5bcccfcb60c43MD52ORIGINAL001153298.pdfTexto completo (inglês)application/pdf4240891http://www.lume.ufrgs.br/bitstream/10183/266302/1/001153298.pdf3965bab9db05939304e419383e68e50eMD5110183/2663022023-10-27 03:29:52.776879oai:www.lume.ufrgs.br:10183/266302Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-10-27T06:29:52Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
spellingShingle Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
Veto, Nicole Moreira
Antocianina
Carotenóides
Mata Atlântica
Fruit ripening
Myrtaceae
title_short Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_full Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_fullStr Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_full_unstemmed Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_sort Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
author Veto, Nicole Moreira
author_facet Veto, Nicole Moreira
Guzman, Frank
Kulcheski, Franceli Rodrigues
Segatto, Ana Lúcia Anversa
Lacerda, Maria Eduarda Gonçalves
Margis, Rogerio
Zolet, Andreia Carina Turchetto
author_role author
author2 Guzman, Frank
Kulcheski, Franceli Rodrigues
Segatto, Ana Lúcia Anversa
Lacerda, Maria Eduarda Gonçalves
Margis, Rogerio
Zolet, Andreia Carina Turchetto
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Veto, Nicole Moreira
Guzman, Frank
Kulcheski, Franceli Rodrigues
Segatto, Ana Lúcia Anversa
Lacerda, Maria Eduarda Gonçalves
Margis, Rogerio
Zolet, Andreia Carina Turchetto
dc.subject.por.fl_str_mv Antocianina
Carotenóides
Mata Atlântica
topic Antocianina
Carotenóides
Mata Atlântica
Fruit ripening
Myrtaceae
dc.subject.eng.fl_str_mv Fruit ripening
Myrtaceae
description Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explored. Our goal was to provide genomic information for these morphotypes to understand the molecular mechanisms of differences in fruit colour in this species. In this study, we performed a comparative transcriptome analysis of red and yellow morphotypes of P. cattleyanum, considering two stages of fruit ripening. The transcriptomic analysis performed encompassing leaves, unripe and ripe fruits, in triplicate for each morphotype. The transcriptome consensus from each morphotype showed 301,058 and 298,310 contigs from plants with yellow and red fruits, respectively. The differential expression revealed important genes that were involved in anthocyanins biosynthesis, such as the anthocyanidin synthase (ANS) and UDP-glucose:flavonoid-o-glucosyltransferase (UFGT) that were differentially regulated during fruit ripening. This study reveals stimulating data for the understanding of the pathways and mechanisms involved in the maturation and colouring of P. cattleyanum fruits and suggests that the ANS and UFGT genes are key factors involved in the synthase and pigmentation accumulation in red fruits.
publishDate 2020
dc.date.issued.fl_str_mv 2020
dc.date.accessioned.fl_str_mv 2023-10-26T03:39:44Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/other
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/266302
dc.identifier.issn.pt_BR.fl_str_mv 1415-4757
dc.identifier.nrb.pt_BR.fl_str_mv 001153298
identifier_str_mv 1415-4757
001153298
url http://hdl.handle.net/10183/266302
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto. Vol. 43, n. 2 (2020), 11 p.
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRGS
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Repositório Institucional da UFRGS
collection Repositório Institucional da UFRGS
bitstream.url.fl_str_mv http://www.lume.ufrgs.br/bitstream/10183/266302/2/001153298.pdf.txt
http://www.lume.ufrgs.br/bitstream/10183/266302/1/001153298.pdf
bitstream.checksum.fl_str_mv a0aaec0c83545e619de5bcccfcb60c43
3965bab9db05939304e419383e68e50e
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv
_version_ 1815447842235351040