Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D

Detalhes bibliográficos
Autor(a) principal: Swat, Maciej
Data de Publicação: 2015
Outros Autores: Thomas, Gilberto Lima, Shirinifard, Abbas, Clendenon, Sherry G., Glazier, James Alexander
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/131377
Resumo: Tumor cells and structure both evolve due to heritable variation of cell behaviors and selection over periods of weeks to years (somatic evolution). Micro-environmental factors exert selection pressures on tumor-cell behaviors, which influence both the rate and direction of evolution of specific behaviors, especially the development of tumor-cell aggression and resistance to chemotherapies. In this paper, we present, step-by-step, the development of a multi-cell, virtual-tissue model of tumor somatic evolution, simulated using the open-source CompuCell3D modeling environment. Our model includes essential cell behaviors, microenvironmental components and their interactions. Our model provides a platform for exploring selection pressures leading to the evolution of tumor-cell aggression, showing that emergent stratification into regions with different cell survival rates drives the evolution of less cohesive cells with lower levels of cadherins and higher levels of integrins. Such reduced cohesivity is a key hallmark in the progression of many types of solid tumors.
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spelling Swat, MaciejThomas, Gilberto LimaShirinifard, AbbasClendenon, Sherry G.Glazier, James Alexander2015-12-25T02:39:08Z20151932-6203http://hdl.handle.net/10183/131377000969522Tumor cells and structure both evolve due to heritable variation of cell behaviors and selection over periods of weeks to years (somatic evolution). Micro-environmental factors exert selection pressures on tumor-cell behaviors, which influence both the rate and direction of evolution of specific behaviors, especially the development of tumor-cell aggression and resistance to chemotherapies. In this paper, we present, step-by-step, the development of a multi-cell, virtual-tissue model of tumor somatic evolution, simulated using the open-source CompuCell3D modeling environment. Our model includes essential cell behaviors, microenvironmental components and their interactions. Our model provides a platform for exploring selection pressures leading to the evolution of tumor-cell aggression, showing that emergent stratification into regions with different cell survival rates drives the evolution of less cohesive cells with lower levels of cadherins and higher levels of integrins. Such reduced cohesivity is a key hallmark in the progression of many types of solid tumors.application/pdfengPLoS ONE. San Francisco. Vol. 10, no. 6 (June 2015), e0127972, 40 p.Dinamica celularBiofisica celularSimulação computacionalTensão superficialEmergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3DEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL000969522.pdf000969522.pdfTexto completo (inglês)application/pdf12931295http://www.lume.ufrgs.br/bitstream/10183/131377/1/000969522.pdfc12165ee770a19d91f199b6a9630915cMD51TEXT000969522.pdf.txt000969522.pdf.txtExtracted Texttext/plain96056http://www.lume.ufrgs.br/bitstream/10183/131377/2/000969522.pdf.txte638a8257236f2496f7fadc24e682cf9MD52THUMBNAIL000969522.pdf.jpg000969522.pdf.jpgGenerated Thumbnailimage/jpeg2054http://www.lume.ufrgs.br/bitstream/10183/131377/3/000969522.pdf.jpg326f5c12481883ede2afa1a8bca185e0MD5310183/1313772023-08-11 03:54:15.611834oai:www.lume.ufrgs.br:10183/131377Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-08-11T06:54:15Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
title Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
spellingShingle Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
Swat, Maciej
Dinamica celular
Biofisica celular
Simulação computacional
Tensão superficial
title_short Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
title_full Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
title_fullStr Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
title_full_unstemmed Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
title_sort Emergent stratification in solid tumors selects for reduced cohesion of tumor cells : a multi-cell, virtual-tissue model of tumor evolution using CompuCell3D
author Swat, Maciej
author_facet Swat, Maciej
Thomas, Gilberto Lima
Shirinifard, Abbas
Clendenon, Sherry G.
Glazier, James Alexander
author_role author
author2 Thomas, Gilberto Lima
Shirinifard, Abbas
Clendenon, Sherry G.
Glazier, James Alexander
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Swat, Maciej
Thomas, Gilberto Lima
Shirinifard, Abbas
Clendenon, Sherry G.
Glazier, James Alexander
dc.subject.por.fl_str_mv Dinamica celular
Biofisica celular
Simulação computacional
Tensão superficial
topic Dinamica celular
Biofisica celular
Simulação computacional
Tensão superficial
description Tumor cells and structure both evolve due to heritable variation of cell behaviors and selection over periods of weeks to years (somatic evolution). Micro-environmental factors exert selection pressures on tumor-cell behaviors, which influence both the rate and direction of evolution of specific behaviors, especially the development of tumor-cell aggression and resistance to chemotherapies. In this paper, we present, step-by-step, the development of a multi-cell, virtual-tissue model of tumor somatic evolution, simulated using the open-source CompuCell3D modeling environment. Our model includes essential cell behaviors, microenvironmental components and their interactions. Our model provides a platform for exploring selection pressures leading to the evolution of tumor-cell aggression, showing that emergent stratification into regions with different cell survival rates drives the evolution of less cohesive cells with lower levels of cadherins and higher levels of integrins. Such reduced cohesivity is a key hallmark in the progression of many types of solid tumors.
publishDate 2015
dc.date.accessioned.fl_str_mv 2015-12-25T02:39:08Z
dc.date.issued.fl_str_mv 2015
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dc.relation.ispartof.pt_BR.fl_str_mv PLoS ONE. San Francisco. Vol. 10, no. 6 (June 2015), e0127972, 40 p.
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