Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil

Detalhes bibliográficos
Autor(a) principal: John, Ana Laura de Wallau
Data de Publicação: 2019
Outros Autores: Mader, Geraldo, Fregonezi, Jeferson Nunes, Freitas, Loreta Brandão de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/248365
Resumo: Calibrachoa is a South-American genus comprising 27 species, several considered endemic or rare; few were subjects in genetic studies. We attempted to generate new data about the phylogenetically related and rare species C. eglandulata, C. sendtneriana, C. serrulata, and C. spathulata concerning their genetic diversity and population structure, which, coupled with their known restricted distribution, could help access their conservation status and contribute to the study of the Brazilian biodiversity. We sequenced 88 individuals for plastid intergenic spacers and genotyped 186 individuals for five microsatellite loci. Compared among each other, C. sendtneriana and C. serrulata presented the highest values of genetic diversity [% (sd) = 0.23 (0.14) and 0.43 (0.25), respectively], followed by C. spathulata [% (sd) = 0.19 (0.12)] and C. eglandulata [% (sd) = 0.02 (0.03)]. Population differentiation was evident for these latter species, whereas it was not significant for C. sendtneriana and C. serrulata. Factors such as habitat specificity and fragmentation, pollination syndrome, and life history could explain the observed patterns. Based on the new genetic data and the species’ biology, a conservation status was assigned for C. sendtneriana and the status of the other three species was reviewed.
id UFRGS-2_4d0a47017337faeda53f008c10e7111d
oai_identifier_str oai:www.lume.ufrgs.br:10183/248365
network_acronym_str UFRGS-2
network_name_str Repositório Institucional da UFRGS
repository_id_str
spelling John, Ana Laura de WallauMader, GeraldoFregonezi, Jeferson NunesFreitas, Loreta Brandão de2022-08-31T04:56:47Z20191415-4757http://hdl.handle.net/10183/248365001105142Calibrachoa is a South-American genus comprising 27 species, several considered endemic or rare; few were subjects in genetic studies. We attempted to generate new data about the phylogenetically related and rare species C. eglandulata, C. sendtneriana, C. serrulata, and C. spathulata concerning their genetic diversity and population structure, which, coupled with their known restricted distribution, could help access their conservation status and contribute to the study of the Brazilian biodiversity. We sequenced 88 individuals for plastid intergenic spacers and genotyped 186 individuals for five microsatellite loci. Compared among each other, C. sendtneriana and C. serrulata presented the highest values of genetic diversity [% (sd) = 0.23 (0.14) and 0.43 (0.25), respectively], followed by C. spathulata [% (sd) = 0.19 (0.12)] and C. eglandulata [% (sd) = 0.02 (0.03)]. Population differentiation was evident for these latter species, whereas it was not significant for C. sendtneriana and C. serrulata. Factors such as habitat specificity and fragmentation, pollination syndrome, and life history could explain the observed patterns. Based on the new genetic data and the species’ biology, a conservation status was assigned for C. sendtneriana and the status of the other three species was reviewed.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 42, n. 1 (Mar. 2019), p. 108-119CalibrachoaGenética vegetalDiversidade genéticaMicrossatélitePlastid DNAmicrosatellitesthreatened speciesgrasslandsherbaceous speciesGenetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazilinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001105142.pdf.txt001105142.pdf.txtExtracted Texttext/plain53266http://www.lume.ufrgs.br/bitstream/10183/248365/2/001105142.pdf.txtc5d2fda311ca4cc36c6444d0fee43656MD52ORIGINAL001105142.pdfTexto completo (inglês)application/pdf1058714http://www.lume.ufrgs.br/bitstream/10183/248365/1/001105142.pdfe7336f8d43bf4c3f6165881a6ac057d1MD5110183/2483652022-09-01 05:01:22.649274oai:www.lume.ufrgs.br:10183/248365Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2022-09-01T08:01:22Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
title Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
spellingShingle Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
John, Ana Laura de Wallau
Calibrachoa
Genética vegetal
Diversidade genética
Microssatélite
Plastid DNA
microsatellites
threatened species
grasslands
herbaceous species
title_short Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
title_full Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
title_fullStr Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
title_full_unstemmed Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
title_sort Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil
author John, Ana Laura de Wallau
author_facet John, Ana Laura de Wallau
Mader, Geraldo
Fregonezi, Jeferson Nunes
Freitas, Loreta Brandão de
author_role author
author2 Mader, Geraldo
Fregonezi, Jeferson Nunes
Freitas, Loreta Brandão de
author2_role author
author
author
dc.contributor.author.fl_str_mv John, Ana Laura de Wallau
Mader, Geraldo
Fregonezi, Jeferson Nunes
Freitas, Loreta Brandão de
dc.subject.por.fl_str_mv Calibrachoa
Genética vegetal
Diversidade genética
Microssatélite
topic Calibrachoa
Genética vegetal
Diversidade genética
Microssatélite
Plastid DNA
microsatellites
threatened species
grasslands
herbaceous species
dc.subject.eng.fl_str_mv Plastid DNA
microsatellites
threatened species
grasslands
herbaceous species
description Calibrachoa is a South-American genus comprising 27 species, several considered endemic or rare; few were subjects in genetic studies. We attempted to generate new data about the phylogenetically related and rare species C. eglandulata, C. sendtneriana, C. serrulata, and C. spathulata concerning their genetic diversity and population structure, which, coupled with their known restricted distribution, could help access their conservation status and contribute to the study of the Brazilian biodiversity. We sequenced 88 individuals for plastid intergenic spacers and genotyped 186 individuals for five microsatellite loci. Compared among each other, C. sendtneriana and C. serrulata presented the highest values of genetic diversity [% (sd) = 0.23 (0.14) and 0.43 (0.25), respectively], followed by C. spathulata [% (sd) = 0.19 (0.12)] and C. eglandulata [% (sd) = 0.02 (0.03)]. Population differentiation was evident for these latter species, whereas it was not significant for C. sendtneriana and C. serrulata. Factors such as habitat specificity and fragmentation, pollination syndrome, and life history could explain the observed patterns. Based on the new genetic data and the species’ biology, a conservation status was assigned for C. sendtneriana and the status of the other three species was reviewed.
publishDate 2019
dc.date.issued.fl_str_mv 2019
dc.date.accessioned.fl_str_mv 2022-08-31T04:56:47Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/other
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/248365
dc.identifier.issn.pt_BR.fl_str_mv 1415-4757
dc.identifier.nrb.pt_BR.fl_str_mv 001105142
identifier_str_mv 1415-4757
001105142
url http://hdl.handle.net/10183/248365
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto. Vol. 42, n. 1 (Mar. 2019), p. 108-119
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRGS
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Repositório Institucional da UFRGS
collection Repositório Institucional da UFRGS
bitstream.url.fl_str_mv http://www.lume.ufrgs.br/bitstream/10183/248365/2/001105142.pdf.txt
http://www.lume.ufrgs.br/bitstream/10183/248365/1/001105142.pdf
bitstream.checksum.fl_str_mv c5d2fda311ca4cc36c6444d0fee43656
e7336f8d43bf4c3f6165881a6ac057d1
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv
_version_ 1801225067934253056