Molecular evolution and diversification of the GRF transcription factor family
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/266278 |
Resumo: | Growth Regulating Factors (GRFs) comprise a transcription factor family with important functions in plant growth and development. They are characterized by the presence of QLQ and WRC domains, responsible for interaction with proteins and DNA, respectively. The QLQ domain is named due to the similarity to a protein interaction domain found in the SWI2/SNF2 chromatin remodeling complex. Despite the occurrence of the QLQ domain in both families, the divergence between them had not been further explored. Here, we show evidence for GRF origin and determined its diversification in angiosperm species. Phylogenetic analysis revealed 11 well-supported groups of GRFs in flowering plants. These groups were supported by gene structure, synteny, and protein domain composition. Synteny and phylogenetic analyses allowed us to propose different sets of probable orthologs in the groups. Besides, our results, together with functional data previously published, allowed us to suggest candidate genes for engineering agronomic traits. In addition, we propose that the QLQ domain of GRF genes evolved from the eukaryotic SNF2 QLQ domain, most likely by a duplication event in the common ancestor of the Charophytes and land plants. Altogether, our results are important for advancing the origin and evolution of the GRF family in Streptophyta. |
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Fonini, Leila SpagnoloLazzarotto, FernandaBarros, Pedro Miguel Rodrigues deCagliari, Caroline CabreiraMartins, Marcelo Affonso BegossiSaibo, Nelson José MadeiraZolet, Andreia Carina TurchettoMargis-Pinheiro, Márcia2023-10-26T03:39:23Z20201415-4757http://hdl.handle.net/10183/266278001153294Growth Regulating Factors (GRFs) comprise a transcription factor family with important functions in plant growth and development. They are characterized by the presence of QLQ and WRC domains, responsible for interaction with proteins and DNA, respectively. The QLQ domain is named due to the similarity to a protein interaction domain found in the SWI2/SNF2 chromatin remodeling complex. Despite the occurrence of the QLQ domain in both families, the divergence between them had not been further explored. Here, we show evidence for GRF origin and determined its diversification in angiosperm species. Phylogenetic analysis revealed 11 well-supported groups of GRFs in flowering plants. These groups were supported by gene structure, synteny, and protein domain composition. Synteny and phylogenetic analyses allowed us to propose different sets of probable orthologs in the groups. Besides, our results, together with functional data previously published, allowed us to suggest candidate genes for engineering agronomic traits. In addition, we propose that the QLQ domain of GRF genes evolved from the eukaryotic SNF2 QLQ domain, most likely by a duplication event in the common ancestor of the Charophytes and land plants. Altogether, our results are important for advancing the origin and evolution of the GRF family in Streptophyta.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 43, n. 3 (2020), e20200080, 16 p.Evolução molecularAnálise bayesianaGRFQLQ domainMolecular evolution and diversification of the GRF transcription factor familyinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001153294.pdf.txt001153294.pdf.txtExtracted Texttext/plain65318http://www.lume.ufrgs.br/bitstream/10183/266278/2/001153294.pdf.txt7e9dd950b1df71e391d511287f6205e6MD52ORIGINAL001153294.pdfTexto completo (inglês)application/pdf7457992http://www.lume.ufrgs.br/bitstream/10183/266278/1/001153294.pdfd69b762d9c081cfcd610290e2b11a3dfMD5110183/2662782023-10-27 03:28:59.035213oai:www.lume.ufrgs.br:10183/266278Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-10-27T06:28:59Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Molecular evolution and diversification of the GRF transcription factor family |
title |
Molecular evolution and diversification of the GRF transcription factor family |
spellingShingle |
Molecular evolution and diversification of the GRF transcription factor family Fonini, Leila Spagnolo Evolução molecular Análise bayesiana GRF QLQ domain |
title_short |
Molecular evolution and diversification of the GRF transcription factor family |
title_full |
Molecular evolution and diversification of the GRF transcription factor family |
title_fullStr |
Molecular evolution and diversification of the GRF transcription factor family |
title_full_unstemmed |
Molecular evolution and diversification of the GRF transcription factor family |
title_sort |
Molecular evolution and diversification of the GRF transcription factor family |
author |
Fonini, Leila Spagnolo |
author_facet |
Fonini, Leila Spagnolo Lazzarotto, Fernanda Barros, Pedro Miguel Rodrigues de Cagliari, Caroline Cabreira Martins, Marcelo Affonso Begossi Saibo, Nelson José Madeira Zolet, Andreia Carina Turchetto Margis-Pinheiro, Márcia |
author_role |
author |
author2 |
Lazzarotto, Fernanda Barros, Pedro Miguel Rodrigues de Cagliari, Caroline Cabreira Martins, Marcelo Affonso Begossi Saibo, Nelson José Madeira Zolet, Andreia Carina Turchetto Margis-Pinheiro, Márcia |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Fonini, Leila Spagnolo Lazzarotto, Fernanda Barros, Pedro Miguel Rodrigues de Cagliari, Caroline Cabreira Martins, Marcelo Affonso Begossi Saibo, Nelson José Madeira Zolet, Andreia Carina Turchetto Margis-Pinheiro, Márcia |
dc.subject.por.fl_str_mv |
Evolução molecular Análise bayesiana |
topic |
Evolução molecular Análise bayesiana GRF QLQ domain |
dc.subject.eng.fl_str_mv |
GRF QLQ domain |
description |
Growth Regulating Factors (GRFs) comprise a transcription factor family with important functions in plant growth and development. They are characterized by the presence of QLQ and WRC domains, responsible for interaction with proteins and DNA, respectively. The QLQ domain is named due to the similarity to a protein interaction domain found in the SWI2/SNF2 chromatin remodeling complex. Despite the occurrence of the QLQ domain in both families, the divergence between them had not been further explored. Here, we show evidence for GRF origin and determined its diversification in angiosperm species. Phylogenetic analysis revealed 11 well-supported groups of GRFs in flowering plants. These groups were supported by gene structure, synteny, and protein domain composition. Synteny and phylogenetic analyses allowed us to propose different sets of probable orthologs in the groups. Besides, our results, together with functional data previously published, allowed us to suggest candidate genes for engineering agronomic traits. In addition, we propose that the QLQ domain of GRF genes evolved from the eukaryotic SNF2 QLQ domain, most likely by a duplication event in the common ancestor of the Charophytes and land plants. Altogether, our results are important for advancing the origin and evolution of the GRF family in Streptophyta. |
publishDate |
2020 |
dc.date.issued.fl_str_mv |
2020 |
dc.date.accessioned.fl_str_mv |
2023-10-26T03:39:23Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/other |
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info:eu-repo/semantics/publishedVersion |
format |
article |
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publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/266278 |
dc.identifier.issn.pt_BR.fl_str_mv |
1415-4757 |
dc.identifier.nrb.pt_BR.fl_str_mv |
001153294 |
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1415-4757 001153294 |
url |
http://hdl.handle.net/10183/266278 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Genetics and molecular biology. Ribeirão Preto. Vol. 43, n. 3 (2020), e20200080, 16 p. |
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info:eu-repo/semantics/openAccess |
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openAccess |
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application/pdf |
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