Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy

Detalhes bibliográficos
Autor(a) principal: Firmino Filho, José Macedo
Data de Publicação: 2016
Outros Autores: Angelo, Giovani, Morais, Higor, Dantas, Marcel R., Valentim, Ricardo Alexsandro de Medeiros
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRN
Texto Completo: https://repositorio.ufrn.br/jspui/handle/123456789/29348
Resumo: Background: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancer
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spelling Firmino Filho, José MacedoAngelo, GiovaniMorais, HigorDantas, Marcel R.Valentim, Ricardo Alexsandro de Medeiros2020-06-24T18:32:05Z2020-06-24T18:32:05Z2016FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-71475-925Xhttps://repositorio.ufrn.br/jspui/handle/123456789/2934810.1186/s12938-015-0120-7Biomedical Engineering OnlineAttribution 3.0 Brazilhttp://creativecommons.org/licenses/by/3.0/br/info:eu-repo/semantics/openAccessComputer-aided detection systemLung cancer diagnosisMedical image analysisDetection of pulmonary nodulesLikelihood of malignancyCADe and CADxComputer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBackground: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancerengreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNORIGINALComputer‑aidedDetection-CADe_Valentim_2016.pdfComputer‑aidedDetection-CADe_Valentim_2016.pdfapplication/pdf1640754https://repositorio.ufrn.br/bitstream/123456789/29348/1/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdfc9b279266cf86bb88d3efaf37f2b6bbeMD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.ufrn.br/bitstream/123456789/29348/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81484https://repositorio.ufrn.br/bitstream/123456789/29348/3/license.txte9597aa2854d128fd968be5edc8a28d9MD53TEXTComputer‑aidedDetection-CADe_Valentim_2016.pdf.txtComputer‑aidedDetection-CADe_Valentim_2016.pdf.txtExtracted texttext/plain52735https://repositorio.ufrn.br/bitstream/123456789/29348/4/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.txt547dced7083f5e83e7a2c842cb0c24d6MD54THUMBNAILComputer‑aidedDetection-CADe_Valentim_2016.pdf.jpgComputer‑aidedDetection-CADe_Valentim_2016.pdf.jpgGenerated Thumbnailimage/jpeg1640https://repositorio.ufrn.br/bitstream/123456789/29348/5/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.jpg3173e3334382f4b6233ef912b08070abMD55123456789/293482020-06-28 04:41:06.069oai:https://repositorio.ufrn.br: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Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2020-06-28T07:41:06Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false
dc.title.pt_BR.fl_str_mv Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
title Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
spellingShingle Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
Firmino Filho, José Macedo
Computer-aided detection system
Lung cancer diagnosis
Medical image analysis
Detection of pulmonary nodules
Likelihood of malignancy
CADe and CADx
title_short Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
title_full Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
title_fullStr Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
title_full_unstemmed Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
title_sort Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
author Firmino Filho, José Macedo
author_facet Firmino Filho, José Macedo
Angelo, Giovani
Morais, Higor
Dantas, Marcel R.
Valentim, Ricardo Alexsandro de Medeiros
author_role author
author2 Angelo, Giovani
Morais, Higor
Dantas, Marcel R.
Valentim, Ricardo Alexsandro de Medeiros
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Firmino Filho, José Macedo
Angelo, Giovani
Morais, Higor
Dantas, Marcel R.
Valentim, Ricardo Alexsandro de Medeiros
dc.subject.por.fl_str_mv Computer-aided detection system
Lung cancer diagnosis
Medical image analysis
Detection of pulmonary nodules
Likelihood of malignancy
CADe and CADx
topic Computer-aided detection system
Lung cancer diagnosis
Medical image analysis
Detection of pulmonary nodules
Likelihood of malignancy
CADe and CADx
description Background: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancer
publishDate 2016
dc.date.issued.fl_str_mv 2016
dc.date.accessioned.fl_str_mv 2020-06-24T18:32:05Z
dc.date.available.fl_str_mv 2020-06-24T18:32:05Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-7
dc.identifier.uri.fl_str_mv https://repositorio.ufrn.br/jspui/handle/123456789/29348
dc.identifier.issn.none.fl_str_mv 1475-925X
dc.identifier.doi.none.fl_str_mv 10.1186/s12938-015-0120-7
identifier_str_mv FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-7
1475-925X
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