Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy
Autor(a) principal: | |
---|---|
Data de Publicação: | 2016 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRN |
Texto Completo: | https://repositorio.ufrn.br/jspui/handle/123456789/29348 |
Resumo: | Background: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancer |
id |
UFRN_2cb2e949397604d8a251636bba8eba35 |
---|---|
oai_identifier_str |
oai:https://repositorio.ufrn.br:123456789/29348 |
network_acronym_str |
UFRN |
network_name_str |
Repositório Institucional da UFRN |
repository_id_str |
|
spelling |
Firmino Filho, José MacedoAngelo, GiovaniMorais, HigorDantas, Marcel R.Valentim, Ricardo Alexsandro de Medeiros2020-06-24T18:32:05Z2020-06-24T18:32:05Z2016FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-71475-925Xhttps://repositorio.ufrn.br/jspui/handle/123456789/2934810.1186/s12938-015-0120-7Biomedical Engineering OnlineAttribution 3.0 Brazilhttp://creativecommons.org/licenses/by/3.0/br/info:eu-repo/semantics/openAccessComputer-aided detection systemLung cancer diagnosisMedical image analysisDetection of pulmonary nodulesLikelihood of malignancyCADe and CADxComputer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBackground: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancerengreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNORIGINALComputer‑aidedDetection-CADe_Valentim_2016.pdfComputer‑aidedDetection-CADe_Valentim_2016.pdfapplication/pdf1640754https://repositorio.ufrn.br/bitstream/123456789/29348/1/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdfc9b279266cf86bb88d3efaf37f2b6bbeMD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.ufrn.br/bitstream/123456789/29348/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81484https://repositorio.ufrn.br/bitstream/123456789/29348/3/license.txte9597aa2854d128fd968be5edc8a28d9MD53TEXTComputer‑aidedDetection-CADe_Valentim_2016.pdf.txtComputer‑aidedDetection-CADe_Valentim_2016.pdf.txtExtracted texttext/plain52735https://repositorio.ufrn.br/bitstream/123456789/29348/4/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.txt547dced7083f5e83e7a2c842cb0c24d6MD54THUMBNAILComputer‑aidedDetection-CADe_Valentim_2016.pdf.jpgComputer‑aidedDetection-CADe_Valentim_2016.pdf.jpgGenerated Thumbnailimage/jpeg1640https://repositorio.ufrn.br/bitstream/123456789/29348/5/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.jpg3173e3334382f4b6233ef912b08070abMD55123456789/293482020-06-28 04:41:06.069oai:https://repositorio.ufrn.br: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Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2020-06-28T07:41:06Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false |
dc.title.pt_BR.fl_str_mv |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
title |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
spellingShingle |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy Firmino Filho, José Macedo Computer-aided detection system Lung cancer diagnosis Medical image analysis Detection of pulmonary nodules Likelihood of malignancy CADe and CADx |
title_short |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
title_full |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
title_fullStr |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
title_full_unstemmed |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
title_sort |
Computer‑aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy |
author |
Firmino Filho, José Macedo |
author_facet |
Firmino Filho, José Macedo Angelo, Giovani Morais, Higor Dantas, Marcel R. Valentim, Ricardo Alexsandro de Medeiros |
author_role |
author |
author2 |
Angelo, Giovani Morais, Higor Dantas, Marcel R. Valentim, Ricardo Alexsandro de Medeiros |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Firmino Filho, José Macedo Angelo, Giovani Morais, Higor Dantas, Marcel R. Valentim, Ricardo Alexsandro de Medeiros |
dc.subject.por.fl_str_mv |
Computer-aided detection system Lung cancer diagnosis Medical image analysis Detection of pulmonary nodules Likelihood of malignancy CADe and CADx |
topic |
Computer-aided detection system Lung cancer diagnosis Medical image analysis Detection of pulmonary nodules Likelihood of malignancy CADe and CADx |
description |
Background: CADe and CADx systems for the detection and diagnosis of lung cancer have been important areas of research in recent decades. However, these areas are being worked on separately. CADe systems do not present the radiological characteristics of tumors, and CADx systems do not detect nodules and do not have good levels of automation. As a result, these systems are not yet widely used in clinical settings. Methods: The purpose of this article is to develop a new system for detection and diagnosis of pulmonary nodules on CT images, grouping them into a single system for the identification and characterization of the nodules to improve the level of automation. The article also presents as contributions: the use of Watershed and Histogram of oriented Gradients (HOG) techniques for distinguishing the possible nodules from other structures and feature extraction for pulmonary nodules, respectively. For the diagnosis, it is based on the likelihood of malignancy allowing more aid in the decision making by the radiologists. A rule-based classifier and Support Vector Machine (SVM) have been used to eliminate false positives. Results: The database used in this research consisted of 420 cases obtained randomly from LIDC-IDRI. The segmentation method achieved an accuracy of 97 % and the detection system showed a sensitivity of 94.4 % with 7.04 false positives per case. Different types of nodules (isolated, juxtapleural, juxtavascular and ground-glass) with diameters between 3 mm and 30 mm have been detected. For the diagnosis of malignancy our system presented ROC curves with areas of: 0.91 for nodules highly unlikely of being malignant, 0.80 for nodules moderately unlikely of being malignant, 0.72 for nodules with indeterminate malignancy, 0.67 for nodules moderately suspicious of being malignant and 0.83 for nodules highly suspicious of being malignant. Conclusions: From our preliminary results, we believe that our system is promising for clinical applications assisting radiologists in the detection and diagnosis of lung cancer |
publishDate |
2016 |
dc.date.issued.fl_str_mv |
2016 |
dc.date.accessioned.fl_str_mv |
2020-06-24T18:32:05Z |
dc.date.available.fl_str_mv |
2020-06-24T18:32:05Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-7 |
dc.identifier.uri.fl_str_mv |
https://repositorio.ufrn.br/jspui/handle/123456789/29348 |
dc.identifier.issn.none.fl_str_mv |
1475-925X |
dc.identifier.doi.none.fl_str_mv |
10.1186/s12938-015-0120-7 |
identifier_str_mv |
FIRMINO, Macedo; ANGELO, Giovani; MORAIS, Higor; DANTAS, Marcel R.; VALENTIM, Ricardo. Computer-aided detection (CADe) and diagnosis (CADx) system for lung cancer with likelihood of malignancy. Biomedical Engineering Online (Online), v. 15, p. 2, 2016. Disponível em: https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-015-0120-7. Acesso em: 18 Jun. 2020. https://doi.org/10.1186/s12938-015-0120-7 1475-925X 10.1186/s12938-015-0120-7 |
url |
https://repositorio.ufrn.br/jspui/handle/123456789/29348 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
Attribution 3.0 Brazil http://creativecommons.org/licenses/by/3.0/br/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution 3.0 Brazil http://creativecommons.org/licenses/by/3.0/br/ |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Biomedical Engineering Online |
publisher.none.fl_str_mv |
Biomedical Engineering Online |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFRN instname:Universidade Federal do Rio Grande do Norte (UFRN) instacron:UFRN |
instname_str |
Universidade Federal do Rio Grande do Norte (UFRN) |
instacron_str |
UFRN |
institution |
UFRN |
reponame_str |
Repositório Institucional da UFRN |
collection |
Repositório Institucional da UFRN |
bitstream.url.fl_str_mv |
https://repositorio.ufrn.br/bitstream/123456789/29348/1/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf https://repositorio.ufrn.br/bitstream/123456789/29348/2/license_rdf https://repositorio.ufrn.br/bitstream/123456789/29348/3/license.txt https://repositorio.ufrn.br/bitstream/123456789/29348/4/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.txt https://repositorio.ufrn.br/bitstream/123456789/29348/5/Computer%e2%80%91aidedDetection-CADe_Valentim_2016.pdf.jpg |
bitstream.checksum.fl_str_mv |
c9b279266cf86bb88d3efaf37f2b6bbe 4d2950bda3d176f570a9f8b328dfbbef e9597aa2854d128fd968be5edc8a28d9 547dced7083f5e83e7a2c842cb0c24d6 3173e3334382f4b6233ef912b08070ab |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN) |
repository.mail.fl_str_mv |
|
_version_ |
1814832892397748224 |