A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRN |
Texto Completo: | https://repositorio.ufrn.br/jspui/handle/123456789/23050 |
Resumo: | Gross chromosomal rearrangements (GCRs) play an important role in human diseases, including cancer. The identity of all Genome Instability Suppressing (GIS) genes is not currently known. Here multiple Saccharomyces cerevisiae GCR assays and query mutations were crossed into arrays of mutants to identify progeny with increased GCR rates. One hundred eighty two GIS genes were identified that suppressed GCR formation. Another 438 cooperatively acting GIS genes were identified that were not GIS genes, but suppressed the increased genome instability caused by individual query mutations. Analysis of TCGA data using the human genes predicted to act in GIS pathways revealed that a minimum of 93% of ovarian and 66% of colorectal cancer cases had defects affecting one or more predicted GIS gene. These defects included loss-of-function mutations, copy-number changes associated with reduced expression, and silencing. In contrast, acute myeloid leukaemia cases did not appear to have defects affecting the predicted GIS genes. |
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Putnam, Christopher D.Srivatsan, AnjanaNene, Rahul V.Martinez, Sandra L.Clotfelter, Sarah P.Bell, Sara N.Somach, Steven B.Souza, Jorge E.S. deFonseca, André F.Souza, Sandro José deKolodner, Richard D.2017-05-23T12:46:17Z2017-05-23T12:46:17Z2016-04-13https://repositorio.ufrn.br/jspui/handle/123456789/2305010.1038/ncomms11256enggeneticcancerA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGross chromosomal rearrangements (GCRs) play an important role in human diseases, including cancer. The identity of all Genome Instability Suppressing (GIS) genes is not currently known. Here multiple Saccharomyces cerevisiae GCR assays and query mutations were crossed into arrays of mutants to identify progeny with increased GCR rates. One hundred eighty two GIS genes were identified that suppressed GCR formation. Another 438 cooperatively acting GIS genes were identified that were not GIS genes, but suppressed the increased genome instability caused by individual query mutations. Analysis of TCGA data using the human genes predicted to act in GIS pathways revealed that a minimum of 93% of ovarian and 66% of colorectal cancer cases had defects affecting one or more predicted GIS gene. These defects included loss-of-function mutations, copy-number changes associated with reduced expression, and silencing. In contrast, acute myeloid leukaemia cases did not appear to have defects affecting the predicted GIS genes.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNORIGINALA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdfA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdfSandroSouza_ICe_genetic network_2016application/pdf729020https://repositorio.ufrn.br/bitstream/123456789/23050/1/A%20genetic%20network%20that%20suppresses%20genome%20rearrangements%20in%20Saccharomyces%20cerevisiae%20and%20contains%20defects%20in%20cancers.pdfd279edf322174c4acec5b1796b21000cMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.ufrn.br/bitstream/123456789/23050/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52TEXTA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdf.txtA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdf.txtExtracted texttext/plain89136https://repositorio.ufrn.br/bitstream/123456789/23050/5/A%20genetic%20network%20that%20suppresses%20genome%20rearrangements%20in%20Saccharomyces%20cerevisiae%20and%20contains%20defects%20in%20cancers.pdf.txtb8a5e21d24f2b284194d01c9b3a8d09aMD55THUMBNAILA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdf.jpgA genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.pdf.jpgIM Thumbnailimage/jpeg9743https://repositorio.ufrn.br/bitstream/123456789/23050/6/A%20genetic%20network%20that%20suppresses%20genome%20rearrangements%20in%20Saccharomyces%20cerevisiae%20and%20contains%20defects%20in%20cancers.pdf.jpg6c206b7353fb8512a223487cd9c94939MD56123456789/230502021-07-09 19:43:43.303oai:https://repositorio.ufrn.br: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Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2021-07-09T22:43:43Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false |
dc.title.pt_BR.fl_str_mv |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
title |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
spellingShingle |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers Putnam, Christopher D. genetic cancer |
title_short |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
title_full |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
title_fullStr |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
title_full_unstemmed |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
title_sort |
A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers |
author |
Putnam, Christopher D. |
author_facet |
Putnam, Christopher D. Srivatsan, Anjana Nene, Rahul V. Martinez, Sandra L. Clotfelter, Sarah P. Bell, Sara N. Somach, Steven B. Souza, Jorge E.S. de Fonseca, André F. Souza, Sandro José de Kolodner, Richard D. |
author_role |
author |
author2 |
Srivatsan, Anjana Nene, Rahul V. Martinez, Sandra L. Clotfelter, Sarah P. Bell, Sara N. Somach, Steven B. Souza, Jorge E.S. de Fonseca, André F. Souza, Sandro José de Kolodner, Richard D. |
author2_role |
author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Putnam, Christopher D. Srivatsan, Anjana Nene, Rahul V. Martinez, Sandra L. Clotfelter, Sarah P. Bell, Sara N. Somach, Steven B. Souza, Jorge E.S. de Fonseca, André F. Souza, Sandro José de Kolodner, Richard D. |
dc.subject.por.fl_str_mv |
genetic cancer |
topic |
genetic cancer |
description |
Gross chromosomal rearrangements (GCRs) play an important role in human diseases, including cancer. The identity of all Genome Instability Suppressing (GIS) genes is not currently known. Here multiple Saccharomyces cerevisiae GCR assays and query mutations were crossed into arrays of mutants to identify progeny with increased GCR rates. One hundred eighty two GIS genes were identified that suppressed GCR formation. Another 438 cooperatively acting GIS genes were identified that were not GIS genes, but suppressed the increased genome instability caused by individual query mutations. Analysis of TCGA data using the human genes predicted to act in GIS pathways revealed that a minimum of 93% of ovarian and 66% of colorectal cancer cases had defects affecting one or more predicted GIS gene. These defects included loss-of-function mutations, copy-number changes associated with reduced expression, and silencing. In contrast, acute myeloid leukaemia cases did not appear to have defects affecting the predicted GIS genes. |
publishDate |
2016 |
dc.date.issued.fl_str_mv |
2016-04-13 |
dc.date.accessioned.fl_str_mv |
2017-05-23T12:46:17Z |
dc.date.available.fl_str_mv |
2017-05-23T12:46:17Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://repositorio.ufrn.br/jspui/handle/123456789/23050 |
dc.identifier.doi.none.fl_str_mv |
10.1038/ncomms11256 |
url |
https://repositorio.ufrn.br/jspui/handle/123456789/23050 |
identifier_str_mv |
10.1038/ncomms11256 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFRN instname:Universidade Federal do Rio Grande do Norte (UFRN) instacron:UFRN |
instname_str |
Universidade Federal do Rio Grande do Norte (UFRN) |
instacron_str |
UFRN |
institution |
UFRN |
reponame_str |
Repositório Institucional da UFRN |
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Repositório Institucional da UFRN |
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