Current–voltage characteristics of double-strand DNA sequences
Autor(a) principal: | |
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Data de Publicação: | 2009 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRN |
Texto Completo: | https://repositorio.ufrn.br/handle/123456789/30643 |
Resumo: | We use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlations |
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Moreira, Darlan AraújoBezerril, Leonardo MafraAlbuquerque, Eudenilson Lins deFulco, Umberto LaicoOliveira, E. L. deSousa, J. S. de2020-11-23T21:42:46Z2020-11-23T21:42:46Z2009-09-07BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028.0375-9601https://repositorio.ufrn.br/handle/123456789/3064310.1016/j.physleta.2009.07.028ElsevierAttribution 3.0 Brazilhttp://creativecommons.org/licenses/by/3.0/br/info:eu-repo/semantics/openAccessTight-binding HamiltonianDNA moleculeHopping mechanismElectronic propertiesQuasiperiodic structuresCurrent–voltage characteristics of double-strand DNA sequencesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleWe use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlationsengreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNORIGINALCurrent-VoltageCharacteristics_Moreira_2009.pdfCurrent-VoltageCharacteristics_Moreira_2009.pdfapplication/pdf236039https://repositorio.ufrn.br/bitstream/123456789/30643/1/Current-VoltageCharacteristics_Moreira_2009.pdf0caa8248f0b12f210299122717e78e81MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.ufrn.br/bitstream/123456789/30643/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81484https://repositorio.ufrn.br/bitstream/123456789/30643/3/license.txte9597aa2854d128fd968be5edc8a28d9MD53TEXTCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.txtCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.txtExtracted texttext/plain26643https://repositorio.ufrn.br/bitstream/123456789/30643/4/Current-VoltageCharacteristics_MOREIRA_2009.pdf.txt9d8d553c6a2670fa1fa72dee610fbfa5MD54THUMBNAILCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.jpgCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.jpgGenerated Thumbnailimage/jpeg1685https://repositorio.ufrn.br/bitstream/123456789/30643/5/Current-VoltageCharacteristics_MOREIRA_2009.pdf.jpgfb812323102c498099c6c64783099ee8MD55123456789/306432021-11-10 16:38:28.069oai:https://repositorio.ufrn.br:123456789/30643Tk9OLUVYQ0xVU0lWRSBESVNUUklCVVRJT04gTElDRU5TRQoKCkJ5IHNpZ25pbmcgYW5kIGRlbGl2ZXJpbmcgdGhpcyBsaWNlbnNlLCBNci4gKGF1dGhvciBvciBjb3B5cmlnaHQgaG9sZGVyKToKCgphKSBHcmFudHMgdGhlIFVuaXZlcnNpZGFkZSBGZWRlcmFsIFJpbyBHcmFuZGUgZG8gTm9ydGUgdGhlIG5vbi1leGNsdXNpdmUgcmlnaHQgb2YKcmVwcm9kdWNlLCBjb252ZXJ0IChhcyBkZWZpbmVkIGJlbG93KSwgY29tbXVuaWNhdGUgYW5kIC8gb3IKZGlzdHJpYnV0ZSB0aGUgZGVsaXZlcmVkIGRvY3VtZW50IChpbmNsdWRpbmcgYWJzdHJhY3QgLyBhYnN0cmFjdCkgaW4KZGlnaXRhbCBvciBwcmludGVkIGZvcm1hdCBhbmQgaW4gYW55IG1lZGl1bS4KCmIpIERlY2xhcmVzIHRoYXQgdGhlIGRvY3VtZW50IHN1Ym1pdHRlZCBpcyBpdHMgb3JpZ2luYWwgd29yaywgYW5kIHRoYXQKeW91IGhhdmUgdGhlIHJpZ2h0IHRvIGdyYW50IHRoZSByaWdodHMgY29udGFpbmVkIGluIHRoaXMgbGljZW5zZS4gRGVjbGFyZXMKdGhhdCB0aGUgZGVsaXZlcnkgb2YgdGhlIGRvY3VtZW50IGRvZXMgbm90IGluZnJpbmdlLCBhcyBmYXIgYXMgaXQgaXMKdGhlIHJpZ2h0cyBvZiBhbnkgb3RoZXIgcGVyc29uIG9yIGVudGl0eS4KCmMpIElmIHRoZSBkb2N1bWVudCBkZWxpdmVyZWQgY29udGFpbnMgbWF0ZXJpYWwgd2hpY2ggZG9lcyBub3QKcmlnaHRzLCBkZWNsYXJlcyB0aGF0IGl0IGhhcyBvYnRhaW5lZCBhdXRob3JpemF0aW9uIGZyb20gdGhlIGhvbGRlciBvZiB0aGUKY29weXJpZ2h0IHRvIGdyYW50IHRoZSBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkbyBSaW8gR3JhbmRlIGRvIE5vcnRlIHRoZSByaWdodHMgcmVxdWlyZWQgYnkgdGhpcyBsaWNlbnNlLCBhbmQgdGhhdCB0aGlzIG1hdGVyaWFsIHdob3NlIHJpZ2h0cyBhcmUgb2YKdGhpcmQgcGFydGllcyBpcyBjbGVhcmx5IGlkZW50aWZpZWQgYW5kIHJlY29nbml6ZWQgaW4gdGhlIHRleHQgb3IKY29udGVudCBvZiB0aGUgZG9jdW1lbnQgZGVsaXZlcmVkLgoKSWYgdGhlIGRvY3VtZW50IHN1Ym1pdHRlZCBpcyBiYXNlZCBvbiBmdW5kZWQgb3Igc3VwcG9ydGVkIHdvcmsKYnkgYW5vdGhlciBpbnN0aXR1dGlvbiBvdGhlciB0aGFuIHRoZSBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkbyBSaW8gR3JhbmRlIGRvIE5vcnRlLCBkZWNsYXJlcyB0aGF0IGl0IGhhcyBmdWxmaWxsZWQgYW55IG9ibGlnYXRpb25zIHJlcXVpcmVkIGJ5IHRoZSByZXNwZWN0aXZlIGFncmVlbWVudCBvciBhZ3JlZW1lbnQuCgpUaGUgVW5pdmVyc2lkYWRlIEZlZGVyYWwgZG8gUmlvIEdyYW5kZSBkbyBOb3J0ZSB3aWxsIGNsZWFybHkgaWRlbnRpZnkgaXRzIG5hbWUgKHMpIGFzIHRoZSBhdXRob3IgKHMpIG9yIGhvbGRlciAocykgb2YgdGhlIGRvY3VtZW50J3MgcmlnaHRzCmRlbGl2ZXJlZCwgYW5kIHdpbGwgbm90IG1ha2UgYW55IGNoYW5nZXMsIG90aGVyIHRoYW4gdGhvc2UgcGVybWl0dGVkIGJ5CnRoaXMgbGljZW5zZQo=Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2021-11-10T19:38:28Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false |
dc.title.pt_BR.fl_str_mv |
Current–voltage characteristics of double-strand DNA sequences |
title |
Current–voltage characteristics of double-strand DNA sequences |
spellingShingle |
Current–voltage characteristics of double-strand DNA sequences Moreira, Darlan Araújo Tight-binding Hamiltonian DNA molecule Hopping mechanism Electronic properties Quasiperiodic structures |
title_short |
Current–voltage characteristics of double-strand DNA sequences |
title_full |
Current–voltage characteristics of double-strand DNA sequences |
title_fullStr |
Current–voltage characteristics of double-strand DNA sequences |
title_full_unstemmed |
Current–voltage characteristics of double-strand DNA sequences |
title_sort |
Current–voltage characteristics of double-strand DNA sequences |
author |
Moreira, Darlan Araújo |
author_facet |
Moreira, Darlan Araújo Bezerril, Leonardo Mafra Albuquerque, Eudenilson Lins de Fulco, Umberto Laico Oliveira, E. L. de Sousa, J. S. de |
author_role |
author |
author2 |
Bezerril, Leonardo Mafra Albuquerque, Eudenilson Lins de Fulco, Umberto Laico Oliveira, E. L. de Sousa, J. S. de |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
Moreira, Darlan Araújo Bezerril, Leonardo Mafra Albuquerque, Eudenilson Lins de Fulco, Umberto Laico Oliveira, E. L. de Sousa, J. S. de |
dc.subject.por.fl_str_mv |
Tight-binding Hamiltonian DNA molecule Hopping mechanism Electronic properties Quasiperiodic structures |
topic |
Tight-binding Hamiltonian DNA molecule Hopping mechanism Electronic properties Quasiperiodic structures |
description |
We use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlations |
publishDate |
2009 |
dc.date.issued.fl_str_mv |
2009-09-07 |
dc.date.accessioned.fl_str_mv |
2020-11-23T21:42:46Z |
dc.date.available.fl_str_mv |
2020-11-23T21:42:46Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028. |
dc.identifier.uri.fl_str_mv |
https://repositorio.ufrn.br/handle/123456789/30643 |
dc.identifier.issn.none.fl_str_mv |
0375-9601 |
dc.identifier.doi.none.fl_str_mv |
10.1016/j.physleta.2009.07.028 |
identifier_str_mv |
BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028. 0375-9601 10.1016/j.physleta.2009.07.028 |
url |
https://repositorio.ufrn.br/handle/123456789/30643 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
Attribution 3.0 Brazil http://creativecommons.org/licenses/by/3.0/br/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution 3.0 Brazil http://creativecommons.org/licenses/by/3.0/br/ |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Elsevier |
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Elsevier |
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reponame:Repositório Institucional da UFRN instname:Universidade Federal do Rio Grande do Norte (UFRN) instacron:UFRN |
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UFRN |
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UFRN |
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Repositório Institucional da UFRN |
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