Current–voltage characteristics of double-strand DNA sequences

Detalhes bibliográficos
Autor(a) principal: Moreira, Darlan Araújo
Data de Publicação: 2009
Outros Autores: Bezerril, Leonardo Mafra, Albuquerque, Eudenilson Lins de, Fulco, Umberto Laico, Oliveira, E. L. de, Sousa, J. S. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRN
Texto Completo: https://repositorio.ufrn.br/handle/123456789/30643
Resumo: We use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlations
id UFRN_ef206d6bd2be9c58bfdf8bbc0e7b884f
oai_identifier_str oai:https://repositorio.ufrn.br:123456789/30643
network_acronym_str UFRN
network_name_str Repositório Institucional da UFRN
repository_id_str
spelling Moreira, Darlan AraújoBezerril, Leonardo MafraAlbuquerque, Eudenilson Lins deFulco, Umberto LaicoOliveira, E. L. deSousa, J. S. de2020-11-23T21:42:46Z2020-11-23T21:42:46Z2009-09-07BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028.0375-9601https://repositorio.ufrn.br/handle/123456789/3064310.1016/j.physleta.2009.07.028ElsevierAttribution 3.0 Brazilhttp://creativecommons.org/licenses/by/3.0/br/info:eu-repo/semantics/openAccessTight-binding HamiltonianDNA moleculeHopping mechanismElectronic propertiesQuasiperiodic structuresCurrent–voltage characteristics of double-strand DNA sequencesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleWe use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlationsengreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNORIGINALCurrent-VoltageCharacteristics_Moreira_2009.pdfCurrent-VoltageCharacteristics_Moreira_2009.pdfapplication/pdf236039https://repositorio.ufrn.br/bitstream/123456789/30643/1/Current-VoltageCharacteristics_Moreira_2009.pdf0caa8248f0b12f210299122717e78e81MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.ufrn.br/bitstream/123456789/30643/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81484https://repositorio.ufrn.br/bitstream/123456789/30643/3/license.txte9597aa2854d128fd968be5edc8a28d9MD53TEXTCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.txtCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.txtExtracted texttext/plain26643https://repositorio.ufrn.br/bitstream/123456789/30643/4/Current-VoltageCharacteristics_MOREIRA_2009.pdf.txt9d8d553c6a2670fa1fa72dee610fbfa5MD54THUMBNAILCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.jpgCurrent-VoltageCharacteristics_MOREIRA_2009.pdf.jpgGenerated Thumbnailimage/jpeg1685https://repositorio.ufrn.br/bitstream/123456789/30643/5/Current-VoltageCharacteristics_MOREIRA_2009.pdf.jpgfb812323102c498099c6c64783099ee8MD55123456789/306432021-11-10 16:38:28.069oai:https://repositorio.ufrn.br:123456789/30643Tk9OLUVYQ0xVU0lWRSBESVNUUklCVVRJT04gTElDRU5TRQoKCkJ5IHNpZ25pbmcgYW5kIGRlbGl2ZXJpbmcgdGhpcyBsaWNlbnNlLCBNci4gKGF1dGhvciBvciBjb3B5cmlnaHQgaG9sZGVyKToKCgphKSBHcmFudHMgdGhlIFVuaXZlcnNpZGFkZSBGZWRlcmFsIFJpbyBHcmFuZGUgZG8gTm9ydGUgdGhlIG5vbi1leGNsdXNpdmUgcmlnaHQgb2YKcmVwcm9kdWNlLCBjb252ZXJ0IChhcyBkZWZpbmVkIGJlbG93KSwgY29tbXVuaWNhdGUgYW5kIC8gb3IKZGlzdHJpYnV0ZSB0aGUgZGVsaXZlcmVkIGRvY3VtZW50IChpbmNsdWRpbmcgYWJzdHJhY3QgLyBhYnN0cmFjdCkgaW4KZGlnaXRhbCBvciBwcmludGVkIGZvcm1hdCBhbmQgaW4gYW55IG1lZGl1bS4KCmIpIERlY2xhcmVzIHRoYXQgdGhlIGRvY3VtZW50IHN1Ym1pdHRlZCBpcyBpdHMgb3JpZ2luYWwgd29yaywgYW5kIHRoYXQKeW91IGhhdmUgdGhlIHJpZ2h0IHRvIGdyYW50IHRoZSByaWdodHMgY29udGFpbmVkIGluIHRoaXMgbGljZW5zZS4gRGVjbGFyZXMKdGhhdCB0aGUgZGVsaXZlcnkgb2YgdGhlIGRvY3VtZW50IGRvZXMgbm90IGluZnJpbmdlLCBhcyBmYXIgYXMgaXQgaXMKdGhlIHJpZ2h0cyBvZiBhbnkgb3RoZXIgcGVyc29uIG9yIGVudGl0eS4KCmMpIElmIHRoZSBkb2N1bWVudCBkZWxpdmVyZWQgY29udGFpbnMgbWF0ZXJpYWwgd2hpY2ggZG9lcyBub3QKcmlnaHRzLCBkZWNsYXJlcyB0aGF0IGl0IGhhcyBvYnRhaW5lZCBhdXRob3JpemF0aW9uIGZyb20gdGhlIGhvbGRlciBvZiB0aGUKY29weXJpZ2h0IHRvIGdyYW50IHRoZSBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkbyBSaW8gR3JhbmRlIGRvIE5vcnRlIHRoZSByaWdodHMgcmVxdWlyZWQgYnkgdGhpcyBsaWNlbnNlLCBhbmQgdGhhdCB0aGlzIG1hdGVyaWFsIHdob3NlIHJpZ2h0cyBhcmUgb2YKdGhpcmQgcGFydGllcyBpcyBjbGVhcmx5IGlkZW50aWZpZWQgYW5kIHJlY29nbml6ZWQgaW4gdGhlIHRleHQgb3IKY29udGVudCBvZiB0aGUgZG9jdW1lbnQgZGVsaXZlcmVkLgoKSWYgdGhlIGRvY3VtZW50IHN1Ym1pdHRlZCBpcyBiYXNlZCBvbiBmdW5kZWQgb3Igc3VwcG9ydGVkIHdvcmsKYnkgYW5vdGhlciBpbnN0aXR1dGlvbiBvdGhlciB0aGFuIHRoZSBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkbyBSaW8gR3JhbmRlIGRvIE5vcnRlLCBkZWNsYXJlcyB0aGF0IGl0IGhhcyBmdWxmaWxsZWQgYW55IG9ibGlnYXRpb25zIHJlcXVpcmVkIGJ5IHRoZSByZXNwZWN0aXZlIGFncmVlbWVudCBvciBhZ3JlZW1lbnQuCgpUaGUgVW5pdmVyc2lkYWRlIEZlZGVyYWwgZG8gUmlvIEdyYW5kZSBkbyBOb3J0ZSB3aWxsIGNsZWFybHkgaWRlbnRpZnkgaXRzIG5hbWUgKHMpIGFzIHRoZSBhdXRob3IgKHMpIG9yIGhvbGRlciAocykgb2YgdGhlIGRvY3VtZW50J3MgcmlnaHRzCmRlbGl2ZXJlZCwgYW5kIHdpbGwgbm90IG1ha2UgYW55IGNoYW5nZXMsIG90aGVyIHRoYW4gdGhvc2UgcGVybWl0dGVkIGJ5CnRoaXMgbGljZW5zZQo=Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2021-11-10T19:38:28Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false
dc.title.pt_BR.fl_str_mv Current–voltage characteristics of double-strand DNA sequences
title Current–voltage characteristics of double-strand DNA sequences
spellingShingle Current–voltage characteristics of double-strand DNA sequences
Moreira, Darlan Araújo
Tight-binding Hamiltonian
DNA molecule
Hopping mechanism
Electronic properties
Quasiperiodic structures
title_short Current–voltage characteristics of double-strand DNA sequences
title_full Current–voltage characteristics of double-strand DNA sequences
title_fullStr Current–voltage characteristics of double-strand DNA sequences
title_full_unstemmed Current–voltage characteristics of double-strand DNA sequences
title_sort Current–voltage characteristics of double-strand DNA sequences
author Moreira, Darlan Araújo
author_facet Moreira, Darlan Araújo
Bezerril, Leonardo Mafra
Albuquerque, Eudenilson Lins de
Fulco, Umberto Laico
Oliveira, E. L. de
Sousa, J. S. de
author_role author
author2 Bezerril, Leonardo Mafra
Albuquerque, Eudenilson Lins de
Fulco, Umberto Laico
Oliveira, E. L. de
Sousa, J. S. de
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Moreira, Darlan Araújo
Bezerril, Leonardo Mafra
Albuquerque, Eudenilson Lins de
Fulco, Umberto Laico
Oliveira, E. L. de
Sousa, J. S. de
dc.subject.por.fl_str_mv Tight-binding Hamiltonian
DNA molecule
Hopping mechanism
Electronic properties
Quasiperiodic structures
topic Tight-binding Hamiltonian
DNA molecule
Hopping mechanism
Electronic properties
Quasiperiodic structures
description We use a tight-binding formulation to investigate the transmissivity and the current–voltage (I–V) characteristics of sequences of double-strand DNA molecules. In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of artificial sequences (the long-range correlated Fibonacci and Rudin–Shapiro one) and a random sequence, which is a kind of prototype of a short-range correlated system. The random sequence is presented here with the same first neighbors pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the transmissivity spectra, although the I–V curves seem to be mostly influenced by the short-range correlations
publishDate 2009
dc.date.issued.fl_str_mv 2009-09-07
dc.date.accessioned.fl_str_mv 2020-11-23T21:42:46Z
dc.date.available.fl_str_mv 2020-11-23T21:42:46Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028.
dc.identifier.uri.fl_str_mv https://repositorio.ufrn.br/handle/123456789/30643
dc.identifier.issn.none.fl_str_mv 0375-9601
dc.identifier.doi.none.fl_str_mv 10.1016/j.physleta.2009.07.028
identifier_str_mv BEZERRIL, L.M.; MOREIRA, D.A.; ALBUQUERQUE, E.L.; FULCO, U.L.; OLIVEIRA, E.L. de; SOUSA, J.S. de. Current–voltage characteristics of double-strand DNA sequences. Physics Letters A, [S.L.], v. 373, n. 37, p. 3381-3385, set. 2009. Disponível em: https://www.sciencedirect.com/science/article/abs/pii/S0375960109008548?via%3Dihub. Acesso em: 08 set. 2020. http://dx.doi.org/10.1016/j.physleta.2009.07.028.
0375-9601
10.1016/j.physleta.2009.07.028
url https://repositorio.ufrn.br/handle/123456789/30643
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv Attribution 3.0 Brazil
http://creativecommons.org/licenses/by/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution 3.0 Brazil
http://creativecommons.org/licenses/by/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRN
instname:Universidade Federal do Rio Grande do Norte (UFRN)
instacron:UFRN
instname_str Universidade Federal do Rio Grande do Norte (UFRN)
instacron_str UFRN
institution UFRN
reponame_str Repositório Institucional da UFRN
collection Repositório Institucional da UFRN
bitstream.url.fl_str_mv https://repositorio.ufrn.br/bitstream/123456789/30643/1/Current-VoltageCharacteristics_Moreira_2009.pdf
https://repositorio.ufrn.br/bitstream/123456789/30643/2/license_rdf
https://repositorio.ufrn.br/bitstream/123456789/30643/3/license.txt
https://repositorio.ufrn.br/bitstream/123456789/30643/4/Current-VoltageCharacteristics_MOREIRA_2009.pdf.txt
https://repositorio.ufrn.br/bitstream/123456789/30643/5/Current-VoltageCharacteristics_MOREIRA_2009.pdf.jpg
bitstream.checksum.fl_str_mv 0caa8248f0b12f210299122717e78e81
4d2950bda3d176f570a9f8b328dfbbef
e9597aa2854d128fd968be5edc8a28d9
9d8d553c6a2670fa1fa72dee610fbfa5
fb812323102c498099c6c64783099ee8
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)
repository.mail.fl_str_mv
_version_ 1802117899909857280