Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFS |
Texto Completo: | http://ri.ufs.br/jspui/handle/riufs/7247 |
Resumo: | Brazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations. |
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Almeida-Pereira, Camila SantosMuniz, Ana Veruska Cruz da SilvaAlves, Rodrigo PereiraFeitosa-Alcantara, Rosana BarrosoArrigoni-Blank, Maria de FátimaCarvalho, Sheila Valéria ÁlvaresCosta, Tatiana SantosWhite, Larissa Alves SecundoPinto, Vanderson dos SantosSampaio, Taís SantosBlank, Arie Fitzgerald2018-01-29T17:46:42Z2018-01-29T17:46:42Z2017ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018.1676-5680http://ri.ufs.br/jspui/handle/riufs/7247Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0)engFundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP)Genetics and Molecular ResearchCroton tetradeniusConservation strategiesGenetic diversityISSREstratégias de conservaçãoDiversidade genéticaGenetic diversity of native populations of Croton tetradenius Baill. using ISSR markersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations.reponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSinfo:eu-repo/semantics/openAccessLICENSElicense.txtlicense.txttext/plain; charset=utf-81475https://ri.ufs.br/jspui/bitstream/riufs/7247/1/license.txt098cbbf65c2c15e1fb2e49c5d306a44cMD51ORIGINALGeneticDiversityCrotonTetradeniusBaill.pdfGeneticDiversityCrotonTetradeniusBaill.pdfapplication/pdf1856528https://ri.ufs.br/jspui/bitstream/riufs/7247/2/GeneticDiversityCrotonTetradeniusBaill.pdf28f47c4c5bc6c03b993dfbbc3775ebffMD52TEXTGeneticDiversityCrotonTetradeniusBaill.pdf.txtGeneticDiversityCrotonTetradeniusBaill.pdf.txtExtracted texttext/plain38982https://ri.ufs.br/jspui/bitstream/riufs/7247/3/GeneticDiversityCrotonTetradeniusBaill.pdf.txt88ba1e8d406b53faea2125e5cd58da62MD53THUMBNAILGeneticDiversityCrotonTetradeniusBaill.pdf.jpgGeneticDiversityCrotonTetradeniusBaill.pdf.jpgGenerated Thumbnailimage/jpeg1473https://ri.ufs.br/jspui/bitstream/riufs/7247/4/GeneticDiversityCrotonTetradeniusBaill.pdf.jpg7a4201c7fcd2d3a5b3f450507715cd9cMD54riufs/72472018-01-29 14:46:42.245oai:ufs.br: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Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2018-01-29T17:46:42Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false |
dc.title.pt_BR.fl_str_mv |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
title |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
spellingShingle |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers Almeida-Pereira, Camila Santos Croton tetradenius Conservation strategies Genetic diversity ISSR Estratégias de conservação Diversidade genética |
title_short |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
title_full |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
title_fullStr |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
title_full_unstemmed |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
title_sort |
Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers |
author |
Almeida-Pereira, Camila Santos |
author_facet |
Almeida-Pereira, Camila Santos Muniz, Ana Veruska Cruz da Silva Alves, Rodrigo Pereira Feitosa-Alcantara, Rosana Barroso Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Costa, Tatiana Santos White, Larissa Alves Secundo Pinto, Vanderson dos Santos Sampaio, Taís Santos Blank, Arie Fitzgerald |
author_role |
author |
author2 |
Muniz, Ana Veruska Cruz da Silva Alves, Rodrigo Pereira Feitosa-Alcantara, Rosana Barroso Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Costa, Tatiana Santos White, Larissa Alves Secundo Pinto, Vanderson dos Santos Sampaio, Taís Santos Blank, Arie Fitzgerald |
author2_role |
author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Almeida-Pereira, Camila Santos Muniz, Ana Veruska Cruz da Silva Alves, Rodrigo Pereira Feitosa-Alcantara, Rosana Barroso Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Costa, Tatiana Santos White, Larissa Alves Secundo Pinto, Vanderson dos Santos Sampaio, Taís Santos Blank, Arie Fitzgerald |
dc.subject.eng.fl_str_mv |
Croton tetradenius Conservation strategies Genetic diversity ISSR |
topic |
Croton tetradenius Conservation strategies Genetic diversity ISSR Estratégias de conservação Diversidade genética |
dc.subject.por.fl_str_mv |
Estratégias de conservação Diversidade genética |
description |
Brazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations. |
publishDate |
2017 |
dc.date.issued.fl_str_mv |
2017 |
dc.date.accessioned.fl_str_mv |
2018-01-29T17:46:42Z |
dc.date.available.fl_str_mv |
2018-01-29T17:46:42Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018. |
dc.identifier.uri.fl_str_mv |
http://ri.ufs.br/jspui/handle/riufs/7247 |
dc.identifier.issn.none.fl_str_mv |
1676-5680 |
dc.identifier.license.pt_BR.fl_str_mv |
Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0) |
identifier_str_mv |
ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018. 1676-5680 Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0) |
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eng |
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eng |
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Genetics and Molecular Research |
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openAccess |
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Fundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP) |
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