Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers

Detalhes bibliográficos
Autor(a) principal: Almeida-Pereira, Camila Santos
Data de Publicação: 2017
Outros Autores: Muniz, Ana Veruska Cruz da Silva, Alves, Rodrigo Pereira, Feitosa-Alcantara, Rosana Barroso, Arrigoni-Blank, Maria de Fátima, Carvalho, Sheila Valéria Álvares, Costa, Tatiana Santos, White, Larissa Alves Secundo, Pinto, Vanderson dos Santos, Sampaio, Taís Santos, Blank, Arie Fitzgerald
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFS
Texto Completo: http://ri.ufs.br/jspui/handle/riufs/7247
Resumo: Brazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations.
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spelling Almeida-Pereira, Camila SantosMuniz, Ana Veruska Cruz da SilvaAlves, Rodrigo PereiraFeitosa-Alcantara, Rosana BarrosoArrigoni-Blank, Maria de FátimaCarvalho, Sheila Valéria ÁlvaresCosta, Tatiana SantosWhite, Larissa Alves SecundoPinto, Vanderson dos SantosSampaio, Taís SantosBlank, Arie Fitzgerald2018-01-29T17:46:42Z2018-01-29T17:46:42Z2017ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018.1676-5680http://ri.ufs.br/jspui/handle/riufs/7247Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0)engFundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP)Genetics and Molecular ResearchCroton tetradeniusConservation strategiesGenetic diversityISSREstratégias de conservaçãoDiversidade genéticaGenetic diversity of native populations of Croton tetradenius Baill. using ISSR markersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations.reponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSinfo:eu-repo/semantics/openAccessLICENSElicense.txtlicense.txttext/plain; charset=utf-81475https://ri.ufs.br/jspui/bitstream/riufs/7247/1/license.txt098cbbf65c2c15e1fb2e49c5d306a44cMD51ORIGINALGeneticDiversityCrotonTetradeniusBaill.pdfGeneticDiversityCrotonTetradeniusBaill.pdfapplication/pdf1856528https://ri.ufs.br/jspui/bitstream/riufs/7247/2/GeneticDiversityCrotonTetradeniusBaill.pdf28f47c4c5bc6c03b993dfbbc3775ebffMD52TEXTGeneticDiversityCrotonTetradeniusBaill.pdf.txtGeneticDiversityCrotonTetradeniusBaill.pdf.txtExtracted texttext/plain38982https://ri.ufs.br/jspui/bitstream/riufs/7247/3/GeneticDiversityCrotonTetradeniusBaill.pdf.txt88ba1e8d406b53faea2125e5cd58da62MD53THUMBNAILGeneticDiversityCrotonTetradeniusBaill.pdf.jpgGeneticDiversityCrotonTetradeniusBaill.pdf.jpgGenerated Thumbnailimage/jpeg1473https://ri.ufs.br/jspui/bitstream/riufs/7247/4/GeneticDiversityCrotonTetradeniusBaill.pdf.jpg7a4201c7fcd2d3a5b3f450507715cd9cMD54riufs/72472018-01-29 14:46:42.245oai:ufs.br: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Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2018-01-29T17:46:42Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false
dc.title.pt_BR.fl_str_mv Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
title Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
spellingShingle Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
Almeida-Pereira, Camila Santos
Croton tetradenius
Conservation strategies
Genetic diversity
ISSR
Estratégias de conservação
Diversidade genética
title_short Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
title_full Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
title_fullStr Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
title_full_unstemmed Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
title_sort Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers
author Almeida-Pereira, Camila Santos
author_facet Almeida-Pereira, Camila Santos
Muniz, Ana Veruska Cruz da Silva
Alves, Rodrigo Pereira
Feitosa-Alcantara, Rosana Barroso
Arrigoni-Blank, Maria de Fátima
Carvalho, Sheila Valéria Álvares
Costa, Tatiana Santos
White, Larissa Alves Secundo
Pinto, Vanderson dos Santos
Sampaio, Taís Santos
Blank, Arie Fitzgerald
author_role author
author2 Muniz, Ana Veruska Cruz da Silva
Alves, Rodrigo Pereira
Feitosa-Alcantara, Rosana Barroso
Arrigoni-Blank, Maria de Fátima
Carvalho, Sheila Valéria Álvares
Costa, Tatiana Santos
White, Larissa Alves Secundo
Pinto, Vanderson dos Santos
Sampaio, Taís Santos
Blank, Arie Fitzgerald
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Almeida-Pereira, Camila Santos
Muniz, Ana Veruska Cruz da Silva
Alves, Rodrigo Pereira
Feitosa-Alcantara, Rosana Barroso
Arrigoni-Blank, Maria de Fátima
Carvalho, Sheila Valéria Álvares
Costa, Tatiana Santos
White, Larissa Alves Secundo
Pinto, Vanderson dos Santos
Sampaio, Taís Santos
Blank, Arie Fitzgerald
dc.subject.eng.fl_str_mv Croton tetradenius
Conservation strategies
Genetic diversity
ISSR
topic Croton tetradenius
Conservation strategies
Genetic diversity
ISSR
Estratégias de conservação
Diversidade genética
dc.subject.por.fl_str_mv Estratégias de conservação
Diversidade genética
description Brazil has about 300 Croton species in different types of vegetation. Croton tetradenius Baill., which is endemic to the Northeast region and predominant in the Caatinga vegetation, stands out among the several species of this genus. Considering the importance of knowing the genetic variability of a species, the objective of this study was to analyze the genetic diversity of the genotypes of natural populations of C. tetradenius in the State of Sergipe, using ISSR molecular markers. Forty individuals were sampled in four natural populations of the State of Sergipe, Brazil. Thirteen primers were used for DNA amplification using ISSR-PCR, totaling 77 amplified fragments, of which 94.8% were polymorphic. Results of the cluster analysis obtained by the Jaccard’s similarity index, using the UPGMA method, resulted in the formation of six distinct clusters. Analysis of molecular variance (AMOVA), used to estimate the genetic variability among populations, revealed significant genetic variance (P < 0.01) between and within the studied populations, and most of the genetic diversity was found (87%) within populations. According to the Jaccard’s similarity index, none of the studied plants was genetically identical. CTE210 and CTE305 presented high similarity index (0.76), while CTE105 presented low similarity index (<0.16) with all related individuals. ISSR markers were efficient and allowed the formation of a molecular profile, and had sufficient polymorphism to estimate the genetic variability between the accessions of the studied populations.
publishDate 2017
dc.date.issued.fl_str_mv 2017
dc.date.accessioned.fl_str_mv 2018-01-29T17:46:42Z
dc.date.available.fl_str_mv 2018-01-29T17:46:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.fl_str_mv ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018.
dc.identifier.uri.fl_str_mv http://ri.ufs.br/jspui/handle/riufs/7247
dc.identifier.issn.none.fl_str_mv 1676-5680
dc.identifier.license.pt_BR.fl_str_mv Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0)
identifier_str_mv ALMEIDA-PEREIRA, C. S. et al. Genetic diversity of native populations of Croton tetradenius Baill. using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, 2017. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-of-native-populations-of-croton-tetradenius-baill-using-issr-markers-4970.html>. Acesso em: 29 jan. 2018.
1676-5680
Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0)
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